| mature miRNA: AGGATTCTGCTGCTGTGGTGG species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|52498664|gb|CV245689.1|CV245689 WS0259.B21_B21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0259_B21 3', mRNA sequence AGGATTCTGCTGCTGTGGTGG EST sequence (targeted fragment marked with yellow): CCACCTCCCCCTCCACTCTCAGCCGCTATGAGAACCAGAAGCGGCGAGACTGGAACACCTTTGGCCAATACCTCCGGAACCACCGCCCCCCTCTCTCCCTCTCCCGGTGCAGTGGGGCCCACGTCCTCGAGTTCTTGCGTTACCTTGATCAGTTTGGAAAAACCAAAGTCCACACCCAACTCTGCCCCTTCTTTGGCCACCCGAATCCGCCTGCACCGTGCCCGTGCCCTCTCCGCCAGGCCTGGGGAAGCCTCGATGCACTTATTGGCCGCCTCCGTGCTGCCTTTGAAGAGCACGGAGGCAAGCCTGAGAACAACCCCTTCGGGGCTCGTGCTGTTAGGCTTTATCTACGTGAAGTTAGGGACTCACAGGCAAAAGCTAGAGGGATTAGCTACGAGAAGAAGAAGAGAAAGAGACCACCACAGCAGCATAATCCTGCTTCCCTGATGCCAGCACAAGCACCACCAGAGAGTACTACTGGTGCAAGTAATCATGATCAGTAAGAAATTAAGCTATAGTAGTAATCTACCTATTTGCATTAAATTTGGGTTTTAAAGAGAAAGATCAATGAGGATATTATATAACTCATTACAACTTGATGATGATCTCTTAAAATATGTTTGCAATGAACTAAAAAAAAAAAAAAAAAA | |||||||||
gi|52401204|gb|CV238988.1|CV238988 WS0128.B21.1_P05 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS0128_P05 3', mRNA sequence AGGATTCTGCTGCTGTGGTGG EST sequence (targeted fragment marked with yellow): CACTCTCCCGGTGCAGTGGAGCCCACGTCCTCGAGTTTCTTGCGTTACCTTGATCAGTTTGGAAAAACCAAAGTCCACCACCCAACTCTGCCCCTTCTTTGGCCACCCGAACCCGCCTGCACCGTGCCCATGCCCGCTCCGCCAGGCCTGGGGAAGCCTCGATGCACTCATTGGCCGTCTCCGTGCTGCCTTTGAAGAGCACGGAGGCAAGCCTGAGAACAACCCTTTTGGGGCTCGTGCTGTTAGGCTTTATCTACGTGAAGTTAGGGACTCGCAGTCTAAAGCTAGAGGGATTAGCTACGAGAAGAAGAAGAGAAAGAGACCACCACAGCAGCAGAATCCTGCTTCACTGATGCCACCACAAGCACCACCAGAGAGTACTACTAGTGCAAGTGAGAATTATCAGTAAGAAAAAATTAAGCTACTGTCGTAATCTAGCTATTTGAAATTTGGATTTTAAAAGAAAAAAGATCAATGAGTATATTACATAACTCATTACAACTTGATGACGATCTCTTAAAGTATGTTTGCTATGAGTAATGAATTTCCCATCTAGCTAATGGCAAAAAAAAAAAAAAAA | |||||||||
gi|73881321|gb|DT484059.1|DT484059 WS02524.B21_F08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02524_F08 3', mRNA sequence AGGATTCTGCTGCTGTGGTGG EST sequence (targeted fragment marked with yellow): CAAGGTCCCATTCAATCAAGTCAATTGTATGGTCAACCACCACAACAGCAGTATCCATATGCATCAAGTGGGCCCATGCAGCAAGCATATCCTCCTTATGGGTCTGGATCAGCTTCCGATGGGTATAATCAGGCACCACCTGCATCTGGCCCAGGCTATCCTCAGCAAGGTGGCCAGCCTGTTCCAACATATGGACAGCCAGCTGGACAAGCAGCAGCAGCTGGCTATGGTCAAGTCCCTGCTGGGGGCTATGGAGGGTATCCATCTTCACAAGGTTTTCCTGAGCAGCAAGCTGCGAACACTGCAGGTTATGGCTATCAAGTGTCCCAAGATCCTGCTTATGGTAGTGGCCCTGCATTCAGTGCACCAACCAGCCAGCAGGCTTATGCTCAACCAACAGCAGCTCAACCAAGTTATGATCAATCAGTCCCACAATCGGCTGGTTATGTCGCCGCTCCAGCAACAGCACCGGTTGGTTATGGGAAAACGGTGTCTCCACAGCCTGGTTTTCCACAATATGACTCAACCCAGATGTATGCTGCTCCACGCTGAGAGTGATTAGCCTTCCTTGTAGGCGGATTTTCATTCGTGATAAATGAACCGGGCAGTTATGATTAATGTTTTAGATATCTTAATGTTCTTTAGATTACATCTAGGCGTAGTTCTCTTTCTGATAGTAGAAGAACTTTTAGTTTTCACCAATCTTAATATGTAACCAGATAATGCTACTGTTTAATCCAGCTCAAGTTTCATGTTAAAAAAAAAAAAAGGGGGAAAAAAAAAAAAAAAAAA | |||||||||
gi|73868639|gb|DT471377.1|DT471377 WS01213.BR_J13 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01213_J13 5', mRNA sequence AGGATTCTGCTGCTGTGGTGG EST sequence (targeted fragment marked with yellow): GATCATCATCCCTCTACTGATTACTTGTTTGATGCAAAACAAAGCTTCAAATTAGAATCTAAGACAAACAAGAAAGCAAATCAGTATGTGAATGAGGATGCATTCCAGGCTTGTAAAGGCAGGACTGCAGCAAGAACATTTATGCCATTTAAAGCCTACCCTGGTTCGTCAAGGAAAGAGGATGACAGTAATAGAGAGGAATTGCCGGTTCCTGCTCTTTCTCTTTTAACTCCTGGAATTAAGAGCATAAAAGAGGAATCCAACTCTACAGGTTCAAGAAGCAGTTGTNAGTAGATCAGTTTCTACTACTGCCCCGAATTCAGAATCAAATTTACGAAATGGACCTCAATCCCAGCAGCAGAGTTCTAGGAAGCACTAGGAGGTGCTGGTCACCAGAGTTGCANCCGCCAGTTTGTCAATGCTTTACAGCAACTTGGAGGCGCTCAAGTTGCTACTCCCAAGCAGATTAGAGAACTTATGCAAGTTGATGGCTTGACCAATGATGAAGTGAAGAGTCATTTGCAAAAATACCGACTTCATACACGGAGAGTGCCACCAGCTACAGCCTCCGCCCCTGCAAACAATCTGCT | |||||||||
gi|73874131|gb|DT476869.1|DT476869 WS01231.B21_C11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01231_C11 3', mRNA sequence AGGATTCTGCTGCTGTGGTGG EST sequence (targeted fragment marked with yellow): GCCCCGAATTCAGAATCAAATTTACGAAATGGACCTCAATCCCAGCAGCAGAGTTCTAGGAAGCATAGGAGGTGCTGGTCACCAGAGTTGCTCCGCCAGTTTTGTCAATGCTTTACAGCAACTTGGAGGCGCTCAAGTTGCTACTCCCAAGCAGATTAGAGAACTTATGCAAGTTGATGGCTTGACCAATGATGAAGTGAAGAGTCATTTGCAAAAATACCGACTTCATACACGGAGAGTGCCACCAGCTACAGCCTCCGCCCCTGCAAACCAATCTGCTATTGTTTTGGGGGGTTTGTGGATGGCCCAAGATCAGTATGGTGACTCCTCAAAGGCTAACAGTTCCAAGTCTGGCTCTCCCCAAGGTCCTCTGCAGCTAGCTGTAAACACAGGAGGGACCTCCACTACAGGAGGTGATAGCATGGAGGATGACGAAGATGCAAAATTTGAGGGCTATAGCTGGAAAAGTCACATTCACAGATCAGGAAAAGATGTATAGAGTTTGTCCCCCATGAATTTTGCAGATAACCTATACATGATAGGATTATATAATTATAGAAATAATACTAGAAAAATCACATAATTAAAGGGGAAGGTTCTTGAGAATGAGTGACGCTGTTAAATTTTGCAGGATTAGCTTTCTTTCTGTCTTAAAATTGAGTGTCTGTATTTGTTTGGAATTGGTATAAAATTCTAAGACCCTTTATGTTTAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|60711152|gb|DN500962.1|DN500962 UM42TD01.5pR Populus female catkins cDNA library Populus trichocarpa cDNA clone UM42TD01 5', AGGATTCTGCTGCTGTGGTGG EST sequence (targeted fragment marked with yellow): GGTACCCCGGGGAATTGCGGGCGCTGTACGTGCCGGGCGGTAAAGTTGCTGATGAAGCAAGGCAGCAGGCAGCAATGGCCCATAGTGGGATGTTGCCCCGTGCAGTTGTATCTCAGCAACACAACCACTTAAATCCACCCGGCACCCAGGACCAACATCCTCCAATGCACTACTTCAATATTCCCCCACCACCTCAGCAAGAACGAGCATTTTACCCGTCAATGGATCCTCAAAGAATGGGTGCCCTTGTTGGATCCCAAGACGGTACTCCTAATGGGCCTGCAGGATCAGGTGAGAATAAATCTGGATTGGAGAAGCAGCTCGGGCAGCACTATCCATATCAAAGTATGCCACCACCTCACGTGCAATACCAACAACAATACCAACAACAACATTATCCAGCATATGGTTATATGCCGCCAGTGCCACCGTATCAGCAGTATCCTCTGCCATATCACACTCCTGTGCCTCCCCCACAGGTGGTGCAATCCACACAGCAGTATCAGCATCGTGTGCCACCGCCAATGGCTGCACCTGCAGAGTCCATGACCTCTGTGCCCCCACATCAGGGATCC | |||||||||