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mature miRNA: AGTCAGCCCCAGCTCCACGTG
species: Populus trichocarpa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|73898168|gb|DT500906.1|DT500906 PX0019.BR_M07 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0019_M07 5', mRNA sequence 

AGTCAGCCCCAGCTCCACGTG
||||||||||||||||||. |
TCAGTCGGGGTCGAGGTGTTC

EST sequence (targeted fragment marked with yellow):
GGATATCTCTGAAGCTCTTTCCCCATTGTTCAATCAATAATGGCTGTTTTAGTGCTTGCAATACTCATGATGGCCATGGCTGGTCGAGCAAGCTGCACATGGTGCGTTTGCAAGGAAATGGGCACCCCAGTCCTCCAGCAGACTCTAGACTATGCTTGTGGAGCTGGGGCTGACTGTGTTCCTATCCATCAAAATGGTCCTTGTTTCCTACCTAACACTGTCAGAGCTCATTGCAATTATGCTGTCAACAGCTACTTCCAAAAAAAGGGTCAGGCTCAAGGCGCTTGTGATTTCAAAGGCGCTGCTATGGTTTCTGCATCTGATCCTAGCATTAACGGCTGCTCTTACCCTTCCAGTGTCAGCGCTGCGGGCACCGGCACAACTCCAACTCCAGTCGGCACAACTCCAACTCCAGTCGGCACAACTCCAACTACTCCGGTCACCACAACTCCAACTAACACCACACCCTCGACCGCAACCCCATCTACCACCACCACTCCGTACACTGCAACACCTACTGGAGTGCTAGGAGGGATTGGCACTGGTGTAGGTCCATCAGGAGCCGGAATAAACACAGACATCACTGATGCTGGATTCAGACTTGAAAACACTGGCTTGTTCTCATTCTTTATAAC


gi|73894817|gb|DT497555.1|DT497555 WS01126.BR_N02 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01126_N02 5', mRNA sequence 

AGTCAGCCCCAGCTCCACGTG
|.||||||||||||||||. |
TTAGTCGGGGTCGAGGTGTTC

EST sequence (targeted fragment marked with yellow):
GGTAACACCACCCTCTACTCTCTTTCTTTCTCTCTCTGCAAAACTGCAACATTTCTCTGTCCGCCATTGATATCTCTAACGCTCTTTCCGCATTGGTCAATCAATAAAGGCTCTTTTACTGCTTGCAATGCTCAAGTTGGCCATGACTGGTCGTGCAAGTTGCACATGGTGTGTTTGCAAGGAAATGAGCGATTCAGTCCTCCAGCAGACTCTAGACTATGCTTGTGGAGCTGGGGCTGATTGTGGCCCTGTCCATCAAAATGGAGCTTGTTTCCAACCCAATACTGTCAGGGCTCATTGCAATTATGCTGTGAACAGCTACTTCCAAAGAAAGGCTCAGGCTCAAGGCACCTGTGATTTTAAAGGGACTGCAACGGGTTCCGCATCTGATCCTAGCATTAATGGCTGCTCTTATCCTTCCAGTGACAGAGCTGCAGGCAACACCACAACTCCAACTCCAGTCACCGCAACGCCAACTCCGGGAACCACAAATCCATCCACTACCACACCCTCGACCACAACCCCATCCACCACCACACCCTCGACCACAACCCCATCCTCTACCACTCCCACCACTCCATACTCGGAAACACCTAATGGAGAGCTAGGAGGGATTGACGATGGACTACGTCCATCGGGAGCTGGAATAAACACAAACATCCCTGATGCTGAGTTAAGACTTGAAGACACTGGCTTGTTCTCATTCTTTATAATCCTTGTGGTATCCAGTTTGATGCT


gi|73893970|gb|DT496708.1|DT496708 WS01124.BR_D17 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01124_D17 5', mRNA sequence 

AGTCAGCCCCAGCTCCACGTG
|.||||||||||||||||. |
TTAGTCGGGGTCGAGGTGTTC

EST sequence (targeted fragment marked with yellow):
GGTAACACCACCCTCTACTCTCTTTCTTTCTCTCTCTGTAAAACTGCAACATTTCTCTGTCCGCCATTGATATCTCTAACGCTCTTTCCGCATTGTTCAATCAATAATGGCTCTTTTAGTGCTTGCAATGCTCATGTTGGCCATGACTGGTCGTGCAAGTTGCACATGGTGTGTTTGCAAGGAAATGAGCGATTCAGTCCTCCAGCAGACTCTAGACTATGCTTGTGGAGCTGGGGCTGATTGTGGCCCTGTCCATCAAAATGGCGCTTGTTTCCAACCCAATACTGTCAGGGCTCATTGCAATTATGCTGTGAACAGCTACTTCCAAAGAAAGGGTCAGGCTCAAGGCACCTGTGATTTTAAAGGCACTGCAACGGTTTCCGCATCTGATCCTAGCATTAATGGCTGCTCTTATCCTTCCAGTGTCAGCGCTGCAGGCACCAGCACAACTCCAACTCCAGTCACCGCAACGCCAACTCCGGTAACCACAAATCCATCCACTACCACACCCTCGACCACAACCCCATCCACCACCACACCCTCGACCACAACCCCATCCTCTACCACTCCCACCACTCCATACTCGGCAACACCTAATGGAGTGCTAGGAGGGATTGGCAATGGACTAGGTCCATCGGGAGCTGGAATAAACACAGACATCCCTGATGCTGGGTTAAGACTTGAAAACACTGGCTTGTTCTCATTCTTTATAATCCTTGTGGTATCCAGTTTGATACTTTAGTGGGGTTGAAGGTGCAAGAATGTGATCCTGATTGTGGCGCTGTGGTGGGGTACGGTGGTCACAGGTGATGCTGGATATCAATGTGCGTATGTGGGTATGCATGTGATTATGCTGTTGTTTATCTTAGATACGCTAGCTAAGTTTTTGTCTGTTTCTTCTACTTTTCTAC