| mature miRNA: ATCCTTCCTTGGACATGTCT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73888387|gb|DT491125.1|DT491125 WS02546.C21.1_O03 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02546_O03 3', mRNA sequence ATCCTTCCTTGGACATGTCT EST sequence (targeted fragment marked with yellow): AAACAGCAGTAGCCCTGCTCAATCACCCCAGTGGAAAAAATCCGTGAGGACCACCACCTCTCAAGTTCCTTCTCCATCTCTAACCCCAGCTTCACCAACCCTCAAAAATCTTCCCCAACAACAAGGCCGAACACAAGGAGGTCACACACAGATATCTTTTGCGGCTAACCAAAAACCATCTGCTTCGCCACAAGGGCAACCAAATCCCAGCAGTAACCAATCCCCATCTCCTCCGATGATGGTTGGTTCTCCCACAACATCAATTTCTAAGAGTGCAGGTGGAAGTCCGAGGACATCCGCTTCCACGGGTAACAAAGGTGGTCAATCTTCTACGTTATCATCTCAACAATCCAACTCTGCATCAGTACCTGTGCAAAAATCGTCTCCAGTTGGGGGAAGAAATGTTCCATCAATCCTTGGTCATCCTCACAACACCTCTTCATCTAACTCTGGCAGAATGAAGGGGTGAGAAATGTTCAAGGAAGCACGCCATGTGGATCCGAACCCAAATTTTGGTAAAATGAAGTTGAACCAATGGGGGCAGTAATGTTGTCTGCTGACTGGACTTGCTCGCCGTGCGTATTATCTCTCTCTGTACACCTGTGTCTATAGGCTGACAGGGTTGATGGTCAGGTCTAGTTAAATTTGATTGGTTTGATGACGAGAGGCTGGGAATGAAAAGACATGGGAAAAGATTGGTTCAAGTGTTTTTGTAGAGAAAAAGAGGAAAGATGGACGTGGAAAGGTGAAGAAAAAGAACTACCTTTCCCTCTCATGGGTCAGTTATTTTCTCCACTGTGCTAGATTTTCCATCCCTTTTTTATGGGGTCTAATTCTATTTTCCTGAAAGCGCATTAGGCAGTATCTTCTAAAACAACATATATATCGTGCAGTGGATGGTGTATATGAATTAAAAAAAAAAAAAAAAAA | |||||||||
gi|73877138|gb|DT479876.1|DT479876 WS02527.BR_D18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02527_D18 5', mRNA sequence ATCCTTCCTTGGACATGTCT EST sequence (targeted fragment marked with yellow): GTTTCACAAAATTGGGTTAAATTCAAAAGGGTCTCAAAAATACACAATCTTTAGCAACTAAACAAAGAAGGAAAGAAGAATAAGTTATTATTTCCCCCCTCTGATCTTGTACCATTGTGATCTTGCTCTATTTTGCTCAGTAAATGCATGGATGGAAGAGAAGCCATGCCATTTTCTAGTGGGTCATCTCCATACCATATTCATAGAGGAAGTGGGTTTCTTGGGCCCGGGTATGGATCACAACATGGTGTATCGCATCCCCCACCTGGGTTCAGATCCTTGTCAAATCCTCAACTTGCAGCTCAATCAAATGTCCGGTCTGGCTCAACTGTGCCAGCATTTTCAATAGAGCCACCAGATGTCAATTTCGGTCATGGCATTAACATGGCTGCAACCTCTGAGGTGCAAGTGGGTGAACCAGTGAAGAAGAAGCGAGGGAGGCCCCGGAAATACGGCTTGGTTGGGCAGGTTTCACTTGGATTGTCTCCCTTGCCAAATAAGCCTAAGCCATCTTCAGGGGAGGATTCTTCCACCTCAAAAAGAAATAGAGGGCGGCCGCCTGGGAGTGGAAGGAAGCAGCAATTGGCGACTCTTGGTGAATGGATGAACAGTTCTGCTGGAGTAGCTTTTTCTCCGCATGTGATCAGCATTGAAGTTGGAGAGGATATTGTTTCAAAACTGTTGTCATTTTCCCAACAGAGGCCAAGGGCTGTTTGCATCTTGTCTGGCACTGGTACAGTTTCCTCAGTAACACTCCGTCAGCCAGCATCTTCTGGGTCCTCTATCACATATGAGGGCCGTTTCGAGATATTATGCTTGTCAGGCTCTTACTTTGGTGCCGAAGATGGTGGGCCTCGCAATCGAACTGGAGGTATAAGTGCTTTCTCTTCTAGTCCTGA | |||||||||
gi|73882727|gb|DT485465.1|DT485465 WS02528.B21_E18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_E18 3', mRNA sequence ATCCTTCCTTGGACATGTCT EST sequence (targeted fragment marked with yellow): GGGATGTTGTCATTATGTCCTCCAGTCACACTTGCCTTTACCAGTAGTACTGATCCTGCAAAGGCAGCTGCTAACAATATGAAAGGAGGTGGCTTACCTTCACAGGGTCTTATCCATGCCCAATTTGCTGCTGCACATCCCGCTGGAAAGCCGCATCAGATTTTACCTGCTGGCTTCTCTTATGTTCATCCTGTTCCCACTGTGGTTCAGGTGAAACCGGCAGAGAAGAAACAACCTGCTGGCGAATAGAATCATGTGCCTGGTGCTTTAGATGGCAACCTGCGGATCGGAGAAGATTGAAAAAGACTAGTAGATTGGTTTGATTGGGGATTTTTCAATTTATGAAGGGAAAGCAATTAACAAGCCAAGGAAATGACATTTTGAATGCCTTCTGGCAGAATGAAGGGGTGAGAAATGTTCAAGGAAGCACGCCATGTGGATCCGAACCCAAATTTTGGTAAAATGAAGTTGAACCAATGGGGGCAGTAATGTTGTCTGCTGACTGGACTTGCTCGCCGTGCGTATTATCTCTCTCTGTACACCTGTGTCTATAGGCTGACAGGGTTGATGGTCAGGTCTAGTTAAATTTGATTGGTTTGATGACGAGAGGCTGGGAATGAAAAGACATGGGAAAAGATTGGTTCAAGTGTTTTTGTAGAGAAAAAGAGGAAAGATGGACGTGGAAAGGTGAAGAAAAAGAACTACCTTTCCCTCTCATGGGTCAGTTATTTTCTCCACTGTGCTAGATTTTCCATCCCTTTTTTATGGGGTCTAATTCTATTTTCCTGAAAGCGCATTAGGCAGTATCTTCTAAAACAACATATATATCGTGCAGTGGATGGTGTATATGAATTATGTCTTGCACATATAAAAGTAAACCCACCCAATTTTTTTAAAAAAAAAAAAAAAAAA | |||||||||
gi|73882010|gb|DT484748.1|DT484748 WS02526.B21_E24 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02526_E24 3', mRNA sequence ATCCTTCCTTGGACATGTCT EST sequence (targeted fragment marked with yellow): AAGTATGAGTCCAAAGATCGACCTGACATTAAGTTTCTCCTTACAGCAGTGGCCCCTCTCCAGAAACAAAAAGAGGTTGCGTCTCATGTGCTAATGGGTCTTTCTAAAACTCCAGCAGCGCTGCCAACCATGCTTTCCCCACTTGGAAAGGCTTGTGCAAGGATGGATCTTACTGCAGTGCACGAAATTTTGCTTAAAACAGGCTATAAAGATGAAGAAGGTGCAGAAAATGAGTTGTCATTTCAAGAGTGGACACAGCAAGTACAAGATATGCTGAATACAAAGAAATTTGGGGATATTGCTTTCAGAGACAAAGATTTTAAAAATGCCATTGAATATTATACAAAGTTGGTATCGATGATGTCTGTTCCTTCTGGTACTATTTTTGTGAGGCGAGCCCTGTCGTACTTGATGATTGGCCAGGAAGAGCATGCATTGAGAGATGCAATGCAGGCTCAGGTGTGTTTGCCGGAGTGGCCCACCGCATTCTACATGCAAGCTCTGGCGCTGTCCAAGCTGGGAATGGAAAGCGATGCTCAAGACATGCTTAATGACGGGGCCTCATTTGAAGCAAAGAAGCAGAACAGCTGGCGCATTTAAAATTATGAAGGCCCTGCTGTCGTCGGCATGGGTTTGGGCGGCAACTGGGGAAGAAATCTTGCGAGGGCAATTATAATTAGGAGTGGATGTTGCCTCCCTTTTTTCAGAAAACGTAGTAATTTAAGCGCAAAAAAAAAAAAAAAAA | |||||||||
gi|52503533|gb|CV250558.1|CV250558 WS0113.B21_P10 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0113_P10 3', mRNA sequence ATCCTTCCTTGGACATGTCT EST sequence (targeted fragment marked with yellow): TCCAGTACGCTAAGGCCAAGGAAGATATTCTGGTCGAAAGTCATCACGCGGCCTATAAGATCAAGAAAGGTGAAATGATCTTTGGATATCAGCCGTTCGCCACGAAGGATCCTGAGGTTTTTGATGATGCTGAGGAGTTTGTGGGGCATAGGTTTGTGGGGGAGGGAGAGAAGTTATTGAAGTATGTTTATTGGTCAAATGGGCGTGAGACTGTGGATCCAACGGTGGAGGATAAGCAATGTCCAGGGAAGGATATGGTAGTGCTTCTGTCTAGGCTACTGTTGGTGGAGTTCTTCCTACGTTACGACACGTTTACCGTGGAGACGGCAGTTTTGCCGATTGGATCATCCGTGACTTTAACCTCGCTGGGTAAAGCCACCAGCATTTGACGATGGTCACCCAGCTGCCTCTTGTCAAGTTCTATTTTGCGGGCTGCTTCGATAGCTGCCCTTCCTTTTTGGTGGCTAATACCCACTACATTGGCTTTGGGCGAATCATCAAAGTATTTCAAATAAACTATTCCTCCACTCGCTTGAAAGCCTCATCGTTATATATAATAATCATTTTTATATATGTCACAGTTTCATACAAGTCGGAGTGTATCATTTTCTAATAGCTCTTCCTTTTGTGCACAAATCTGACGTTGGTTTGTAGTGTATTGTCGTCGTTCAAAGTTTGTATACCCTTTCTTCATGCTATTTGAATTTCCATTTTCTCGTGTGAAAAAAAAAAAAAAAA | |||||||||