| mature miRNA: CACTGTGCATGTTAATTGCA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|24071267|gb|BU879743.1|BU879743 V063H03 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence CACTGTGCATGTTAATTGCA EST sequence (targeted fragment marked with yellow): AAGAATGGAAGCACCAAAGATGATCGAGCATCAAATTGGAGACATCCATGATGCTCTTCGGTTCGGCCTCGATACCAAGAGAGGCGACATCATTGGATCTCACCCTCTTGAATCTGCCTTGCTCTCTGTGGAGAGAAATCAAGAGCATATGAAGAGAATAACACTTGCGAACGTTTATGGAGCAGCCTTTCCCGTTCAGATGGGCATCGAAAGGCAGATGCTTTCTAGATTCCAGAGGCCACAAGGACCAATTCCATCTTCAATGCTAGGACTAGAGGCTTTGACAGGAAGTTTGGAGGATTTTGGTTTCGAGGATTATCTGAATGATCCTCGTGAGTCTGAAACTTTCCGTCCAGTGGACATGCACAGTGNGGATGGAAGTTTGTCTTGGATTGTCTAAAGGGCCAGCCTGCAAAAGCTTCATGTGATCTGATGAGCATTTCAGCAATGCCTCTGATTATTTGTACTCAAAACGATTTGGTTAAACCGTAGGGGTAATTTCTACTTTGATGAATTTGGCTGTGTTAAAACTTATGAACATCCAACTCGGTTATTTTTTGATAATGGCATCATGATTGGA | |||||||||
gi|73898124|gb|DT500862.1|DT500862 PX0019.BR_J01 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0019_J01 5', mRNA sequence CACTGTGCATGTTAATTGCA EST sequence (targeted fragment marked with yellow): AGCTTGCTCACAAATCGAAGAAAACGAGAAAGAATGGAAGCACCAAAGATGATCGAGCATCAAATTGGAGACATCCATGATGCTCTTCGGTTCGGCCTCGATACCAAGAGAGGCGACATCATTGGATCTCACCCTCTTGAATCTGCCTTGCTCTCTGTGGAGAGAAATCAAGAGCATATGAAGAGAATAACACTTGCGAACGTTTATGGAGCAGCCTTTCGTTCAGATGGGCATCGAAAGGCAGATGCTTTCTAGATTCCAGAGGCCACAAGGACCAATTCCATCTTCAATGCTAGGACTAGAGGCTTTGACAGGAAGTTTGGAGGATTTTGGTTTCGAGGATTATCTGAATGATCCTCGTGAGTCTGAAACTTTCCGTCCAGTGGACATGCACAGTGGGATGGAAGTTCGTCTTGGATTGTCTAAAGGGCCAGCCTGCAAAAGCTTCATGTGATCTGATGAGCATTTCAGCAATGCCTCTGATTATTTGCACTCAAAACGATTTGGTTAAAACGTAGGGGTAATTTCTACTTTGATGAATTTGGCTGTGTTAAAACTTATGAACATCCAACTCGGTTATTTTTTGATAATGGCCTCATGATTGGATCCATTTAATTTATCTATTATCAGTATCGATGTTCGTATGAAAAA | |||||||||
gi|73885582|gb|DT488320.1|DT488320 WS02536.B21_B19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02536_B19 3', mRNA sequence CACTGTGCATGTTAATTGCA EST sequence (targeted fragment marked with yellow): GGGAAACAGGAGCCGGATACGATTGTAATGAAAGGAGTTCCTTCGCGGTGGGTTGCGGAGCCTAGGGTTTCGTCAAAGCCTTCGATGAATCTTAATGTTACTGAGGATGATGATCAAGATAAGGATGCAGATGAGAATGGCGGGGACATAATTTCAGGCCTCCACTGCAAGATTGTGGTTCAGTTTGAGAAACATAGGGACTTCTATAATGCTCTTAAGGTCTTATGTGGGCGCTCATTACAGAAGCAAGGATCACGATTGAAGGCTGATTATGAGGTCACCTGGGCCAAGGATGGCTTCTTCCGGAATTCAAGAAGTCAAGCACGAGAAAATAGTAGGGTGCCAGCAGCGGGAAGGGGGCACTACAGAAATGAAGCTCCCAGGCACGAACCTCACTTGTCTCAATTTACTGCTGATGACACACGCCGGAAGAGGTTCAAGGAATAGGAATGGTGACACCCACGTTGAGAAATATCTACAGACTGAGTTGAGAACATGAGGGGTGATTCCTACTGGTTAACGACCAAGAATTTAATGTTTTGTTCCCTTCTCGAACATATTATTTGTAGCATAACCTCCTAGAAGATTGACGATGATTGGCCCAGTCTGTTGTACGAATAGGTCACACTTGTAAGTGGCATGCACATTGCTGTGAGTTTGCCTACGGACCTATATTAATTTTTGTATTACCACAAAAAAAAAAAAAAAAAA | |||||||||
gi|52385556|gb|CV231242.1|CV231242 WS0193.B21_P04 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS0193_P04 3', mRNA sequence CACTGTGCATGTTAATTGCA EST sequence (targeted fragment marked with yellow): GCCGGAAGAGGTTCAAGGAATAGGAATGGTGACACCCGCGTTGAGAAATATCTACAGACTGAGTTGAGAACATGAGGGGTGATTCCTACTGGTTAACAACCAAGAATTTAATGTTTTGTTCCCTTCTCGAACGTATTATTTGTACCATAACCTCCTAGAAGATTGACGATGATTGGCCCAGTTTGTTGTACGAATAGGTCACACTTGTAAGTGGCATGCACATTGCTGTGAGTTTGCCTCCGGACCTATATTAATTTTTGTATTACCTCAGATTAAAGTTCCAATTAATTCAAATAAAATTTGATAATATTGATATTAAAGTAAAAAAAAAAAAAAAAAA | |||||||||
gi|73890376|gb|DT493114.1|DT493114 WS02553.C21_H03 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_H03 3', mRNA sequence CACTGTGCATGTTAATTGCA EST sequence (targeted fragment marked with yellow): GCCCGACTCCATTAACTAACTAGTCGCTTGTTCACAAAGACAGAACACAAACAGAAGAGGAGAAGAGAAATCGAAGAAAACAAGAAAGAATGGAAGCACCAAAGACAATCGAGCATCAAATTGGAGAAGTCCATGATTCTCTTCGTTTCGGCCTTGATACCAAGAGAGGCGACATCATTGGATCTCACCCTCTTGAATCTGCCTTGCTCTCTGTGGAGAAAAATCAAGAGGACATGAAGAGAATAACCCTTGCAAACGCTTATGGGTCAGCTTTTCTTGTTCAGATGGGTATCGAAAGGCAGATGCTTTCCAGATTCCAGAGGCCACCAGGACCAATTCCATCTTCAATGCTCGGGCTGGAGGCTTTGACCGGAAGTTTGGAAGATTTTGGTTTTGAGGATTATCTGAATGATCCTCGTGAATCTGAAACTTTACGTCCAGTGGACATGCATAGTGGGATGGAAGTTCGTCTTGGAATATCAAAAGGACCAGCCTGCAAAAGCATCATGTGATCTGATGAGCATTTCAGCAAAGCCTTCGATTATTTGTACTCGAGATATTTGGTTAAGACGTAGGAGTAATTTCTATGATGAATTTGGCTGTGTTAATGAACATCAAACTCTGCAATTTTATGATAATGGCTTTGTGATTTGGTACTCTAGAAAAAAAAAAAAAAAAAA | |||||||||
gi|73866482|gb|DT469220.1|DT469220 WS01917.C21_C03 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01917_C03 3', mRNA sequence CACTGTGCATGTTAATTGCA EST sequence (targeted fragment marked with yellow): GAGAAATCGAAGAAAACAAAGAAAGAATGGAAGCACCAAAGACAATCGAGCATCAAATTGGAGAAGTCCATGATTCTCTTCGTTTCGGCCTTGATACCAAGAGAGGCGACATCATTGGATCTCACCCTCTTGAATCTGCCTTGCTCTCTGTGGAGAAAAATCAAGAGGACATGAAGAGAATAACACTTGCAAACGCTTATGGGGCAGCTTTTCTTGTTCAGATGGGTATCGAAAGGCAGATGCTTTCTAGATTCCAGAGGCCACCAGGACCAATTCCATCTTCAATGCTCGGGCTGGAGGCTTTGACCGGAAGTTTGGAAGATTTTGGTTTTGAGGATTATCTGAATGATCCTCGTGAATCTGAAACTTTACGTCCAGTGGACATGCATAGTGGGATGGAAGTTCGTCTAGGAATATCAAAAGGACCAGCCTGCAAAAGCTTCATGTGATCTGATGAGCATTTCAGCAACGCCTTTGATTATCTGTACTCGAGATATTTGGTTAAGACGTAGGAGTAATTTCTATGATGAATTTGGCTGTGTTAATGAACATCAAACTCTGCAATTTTATGATAATGACTTTGTGATTTGG | |||||||||
gi|38598490|gb|CK114165.1|CK114165 V038F10 Populus male catkins cDNA library Populus trichocarpa cDNA clone V038F10 5', mRNA seq CACTGTGCATGTTAATTGCA EST sequence (targeted fragment marked with yellow): GGCACACTTCTATAATAAAATGCCTCCAAACTTTCTCCTTCTGTAGCTTGCTCACAAATCGAAGAAAACGAGAAAGAATGGAAGCACCAAAGATGATCGAGCATCAAATTGGAGACATCCATGATGCTCTTCGGTTCGGCCTCGATACCAAGAGAGGCGACATCATTGGATCTCACCCTCTTGAATCTGCCTTGCTCTCTGTGGAGAGAAATCAAGAGCATATGAAGAGAATAACACTTGCGAACGTTTATGGAGCAGCCTTTCCCGTTCAGATGGGCATCGAAAGGCAGATGCTTTCTAGATTCCAGAGGCCACAAGGACCAATTCCATCTTCAATGCTAGGACTAGAGGCTTTGACAGGAAGTTTGGAGGATTTTGGTTTCGAGGATTATCTGAATGATCCTCGTGAGTCTGAAACTTTCCGTCCAGTGGACATGCACAGTGGGATTGGAAGTTCGTCTTGGATTGTCTAAAGGGCCAGCCTGCAAAAGCTTCATGTGATCTGATGAGCATTTCAGCAATGCCTCTGATTATTTGTACTCAAAACGATTTGGTTAAACCGTAGGGGTAATTTCTACTTTGATGAATTTGGCTGTGTTAAAACTTATGAACATCCAACTCGGTTATTTTTTGATAATGGCATCATGATTGGATCCTTCTAATTTTAAA | |||||||||