| mature miRNA: CAGCAGTGGAACACTGCTGT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|24071379|gb|BU879840.1|BU879840 UM38TD03 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence CAGCAGTGGAACACTGCTGT EST sequence (targeted fragment marked with yellow): GAGGCAGAGAGGAGATTAAGCAAAGTAAAACACTAGTAATTAATTATGGCAACCAGCTCGGTTATGGCTCCATCAATCAGCCTGAAACCAGCTCCTTTTACAGTCAAGAAACCTTCTTCAGTGAGAGGGCTCCCGACTCTTGCAAGGAGATCATCTTTCAAAGTTGAGGCTAGTCGTACGAGGAAGACCAACACTGATCAGCCTTATGGAATCAATGGTGGCATGGACTTGAGGGAAGGGGTTGATGCCTCTGGGAGGAAGGGCAAGGGAAAGGGAGTGTACCAATTTGTCGACAAATATGGTGCTAATGTTGATGGATACAGTCCTATTTACAACACTAATGATTGGTCTCCAAGCGGTGATGTTTATGTTGGGGGTAAGACTGGCTTGCTAATCTGGGCTGCTACCCTAGCTGGCCTTCTTGCAGGGGGAGCCCTTCTTGTTTACAGTACAAGTGCTTTGGCACAGTAGAGTNCTGCTGCTCTGATTTGCCTATCCCAAGTTCCCAACTACTGTTTCTAGCAGC | |||||||||
gi|73883478|gb|DT486216.1|DT486216 WS02530.B21_F18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02530_F18 3', mRNA sequence CAGCAGTGGAACACTGCTGT EST sequence (targeted fragment marked with yellow): GCCCGACTCTTGCAAGGAGATCATCTTTCAAAGTTGAGGCTAGTCGTACGAGGAAGACCAACACTGATCAGCCTTATGGAATCAATGGTGGCATGGACTTGAGGGAAGGGGTTGATGCCTCTGGGAGGAAGGGCAAGGGAAAGGGAGTGTACCAATTTGTCGACAAATATGGTGCTAATGTTGATGGATACAGTCCTATTTACAACACTAATGATTGGTCTCCAAGTGGTGATGTTTATGTTGGGGGTAAGACTGGCTTGCTAATCTGGGCTGTTACCCTAGCTGGCCTGCTTGCAGGGGGAGCCCTTCTTGTTTACAGTACAAGTGCTTTGGCACAGTAGAGTTCTGCTGCTCTGATTTGCCTATCCCAAGTTCCCAACTACTGTTTCTAGCAGCAATAATAATAATAATAATAATGTGCTGCTCCAATATATACAAAAAAAAAAAAAAAAAA | |||||||||
gi|73888581|gb|DT491319.1|DT491319 WS02547.C21_G11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02547_G11 3', mRNA sequence CAGCAGTGGAACACTGCTGT EST sequence (targeted fragment marked with yellow): GGCCAATGCTCTTGCAGAAACTGAAGGGTTAGCTGACAAGGTTTCCTTTCAAGTTGCAGATGCATTAGAGCAGCCATTTCCAGATGGACAGTTTGATCTGGTTTGGTCAATGGAGAGTGGAGAGCATATGCCCGACAAAAGAAAGTTTGTTGGTGAATTGGCTAGAGTCGCAGCCCCAGGAGCCACAATTGTTATTGTAACATGGTGTCACAGGGTTCTTGGCCCTTCTGAAGAATCTCTTCAGCCATGGGAGATGAAGCATCTTAAAAAGATATGTGATGCTTACTATCTTCCAGATTGGTGTTCTACTGCTGATTATGTCAACTTACTTGAGTCCCTCTCTCTTCAGGATATTAAGACAGCAGATTGGTCTCAATATGTTGCTCCATTTTGGCCAGCAGTAATTCGCTCGGCATTGACGTGGAAGGGCCTGACATCTCTGCTGCGCAGTGGTATGAAAACCATCAGAGGAGCACTGGTGATGCCATTGATGATTGAAGGATACAAGAAGGGTCTGATTAAGTTTGCCATCATTACATGTAGAAAGCCCGAATAAATTTGAAGACTGCATTCTTCTTTAGACGCAGGAATGGCATCATTCATTACGACTGGAATATTTCTAAGGTTGGAAGAAAACAAAAAGAGAATAAGAATAGAAAACGGGGAAGGAATGCTGGCCAGAATTATAGCATTGCTAATGTTTCCTGGTTAGCTTCTCTCTAGCAGTTATGTTTGATGGTTGTGTATTAATTTATGGATTGCCAGGAGAATGCAAGTGACAGTTGCTATGGCCGGAAGGCTTCTTCTTTAAAGAAAAAAAAAAAAAAAAAA | |||||||||
gi|73877664|gb|DT480402.1|DT480402 WS02528.BR_M18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_M18 5', mRNA sequence CAGCAGTGGAACACTGCTGT EST sequence (targeted fragment marked with yellow): GTGCTACTATCCAGCACGTCACAAACCCAAATCTTCCACAACATCCGCGCGTTCCAGCCCATTCCTCACCTCCACCCATACCGTACGACGTGTCTTGCCCCACTGCCATGTCGTTCCCGGTCGATACGTTGCGCGGGGTCAACCGCCGTTGCAGACACTGGCAGTACTCGAGAGCTTAAGCAAGGCATAGCAGAGCTTTACGACGAGTCCTCTGCTGTATGGGAGGACATTTGGGGAGACCACATGCATCACGGATTCTACTACCCGGATGAAGTAGTTTCCGGGTCGGATTCCGATCACCGGGCTGCTCAGTTCCGAATGATACAAGAGGCACTCAGTTTTGCCGGCGTCTCTGAGGACCCAGAAAAGGGGCCAAAGACTGTGGTTGATGTTGGGTGTGGGATAGGAGGCAGCTCTAGGTACATAGCAAGGAAATTTGGAGCCAAATGCCAAGGCATCACACTTAGTCCCTTCCAAGCGCAGAGGGCCAATGCTCTTGCAGAAACTGAAGGGTTAGCTGACAAGGTTTCCTTTCAAGTTGCAGATGCATTAGAGCAGCCATTTCCAGATGGACAGTTTGATCTGGTTTGGTCAATGGAGAGTGGAGAGCATATGCCCGACAAAAGAAAGTTTGTTGGTGAATTGGCTAGAGTCGCAGCCCCAGGAGCCACAATTGTTATTGTAACATGGTGTCACAGGGTTCTTGGCCCTTCTGAAGAATCTCTTCAGCCATGGGAGATGAAGCATCTTAAAAAGATATGTGATGCTTACTATCTTCCAGATTGGTGTTCTACTGCTGATTAT | |||||||||
gi|73880891|gb|DT483629.1|DT483629 WS02523.B21_C04 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02523_C04 3', mRNA sequence CAGCAGTGGAACACTGCTGT EST sequence (targeted fragment marked with yellow): TTAAAGGCGGTGACACAAGCTAAAGTCCTCCTTGAGCCACTCGGTTTCCTTCTAACGGAGTACACGAGCTTCGCTGACACTTCCTCAATCCCAGGTCATTATGTGCTATTTTGGGAACTTAAGACGCAAGGAACTAATGATCTGCCGGAGCTTGATCCAATTACAATGGAAAAGTGCTGTTCCACTGTTGAAGAATCGCTCGATTCTATTTATAGAAGGTGTAGGAAGAAAGACAAATCAATTGGACCACTGGAAATAAGAGTGGTGACACATGGAACTTTCGATGCACTCATGGATTTTTGTGTATCTCAAGGGTCATCAGTTAACCAGTACAAGACTACAAGATGCATTAAATCCGAGGAGGCCTTCAAGATTTTGCATTCCAGGGTGGTGGGAAGATTTTTCAGCAAGAAAACTCCTTTCTGGGAGCCGTTCAGAATTGAAACTAATTAGTGAATTATGGCTAGCTGTTCGTTGTCTTTAATGGCACTCTCTGGCATGGAGCTTTGTTTCTGGGGATCCTCTTCATATCCTCTACGTTTTGATTTCTAGCCTAGTTTGTTCCGTCCTTTTCCTTCTCTGTACGCTGAATTTGTTTTGAAATCAGACTAAATGGCAAAAAAAAAAAAAAAAAA | |||||||||
gi|24075254|gb|BU883730.1|BU883730 UM98TG01 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence CAGCAGTGGAACACTGCTGT EST sequence (targeted fragment marked with yellow): GAGAGCACAAGAAGCAGGCAAAGAGGAAATTAAGCAAAGTAAAACACTAGTAATTAATTATGGCAACCAGCTCGGTTATGGCTCCATCAATCAGCCTGAAACCAGCTCCTTTTACAGTCAAGAAACCTTCTTCAGTGAGAGGGCTCCCGACTCTTGCAAGGAGATCATCTTTCAAAGTTGAGGCTAGTCGTACGAGGAAGACCAACACTGATCAGCCTTATGGAATCAATGGTGGCATGGACTTGAGGGAAGGGGTTGATGCCTCTGGGAGGAAGGGCAAGGGAAAGGGAGTGTACCAATTTGTCGACAAATATGGTGCTAATGTTGATGGATACAGTCCTATTTACAACACTAATGATTGGTCTCCAAGTGGTGATGTTTATGTTGGGGGTAAGACTGGCTTGCTAATCTGGGCTGTTACCCTAGCTGGCCTTCTTGCAGGGGGAGCCCTTCTTGTTTACAGTACAAGTGCTTTGGCACAGTAGAGTTCTGCTGCTCTGATTTGCCTATCCCAAGTTTCCAACTACTGTTTCTAGCAGCAATAATAATAATAATAATAATAATAATAATAATAATGTGCTGCTCCAATTTATATAATCAGTTCCCTCTTCAATTCCACAGTACAAATATTTTCTAAAAAA | |||||||||
gi|24071401|gb|BU879877.1|BU879877 UM38TF07 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence CAGCAGTGGAACACTGCTGT EST sequence (targeted fragment marked with yellow): GACAAGAAGCAGGCAGAGAGGAGATTAAGCAAAGTAAAACACTAGTAATTAATTATGGCAACCAGCTCGGTTATGGCTCCATCAATCAGCCTGAAACCAGCTCCTTTTACAGTCAAGAAACCTTCTTCAGTGAGAGGGCTCCCGACTCTTGCAAGGAGATCATCTTTCAAAGTTGAGGCTAGTCGTACGAGGAAGACCAACACTGATCAGCCTTATGGAATCAATGGTGGCATGGACTTGAGGGAAGGGGTTGATGCCTCTGGGAGGAAGGGCAAGGGAAAGGGAGTGTACCAATTTGTCGACAAATATGGTGCTAATGTTGATGGATACAGTCCTATTTACAACACTAATGATTGGTCTCCAAGTGGTGATGTTTATGTTGGGGGTAAGACTGGCTTGCTAATCTGGGCTGTTACCCTAGCTGGCCTTCTTGCAGGGGGAGCCCTTCTTGTTTACAGTACAAGTGCTTTGGCACAGTAGAGTTCTGCTGCTCTGATTTGCCTATCCCAAGT | |||||||||
gi|24075225|gb|BU883701.1|BU883701 UM98TC08 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence CAGCAGTGGAACACTGCTGT EST sequence (targeted fragment marked with yellow): AAGCAAAGTAAAACACTAGTAATTAATTATGGCAACCAGCTCGGTTATGGCTCCATCAATCAGCCTGAAACCAGCTCCTTTTACAGTCAAGAAACCTTCTTCAGTGAGAGGGCTCCCGACTCTTGCAAGGAGATCATCTTTCAAAGTTAAGGCTAGTCGTACGAGGAAGACCAACACTGATCAGCCTTATGGAATCAATGGTGGCATGGACTTGAGGGAAGGGGTTGATGCCTCTGGGAGGAAGGGCAAGGGAAAGGGAGTGTACCAATTTGTCGACAAATATGGTGCTAATGTTGATGGATACAGTCCTATTTACAACACTAATGATTGGTCTCCAAGCGGTGATGTTTATGTTGGGGGTAAGACTGGCTTGCTAATCTGGGCTGCTACCCTAGCTGGCCTTCTTGCAGGGGGAGCCCTTCTTGTTTACAGTACAGGTGCTTTGGCACAGTAGAGTNCTGCTGCTCTGATTTGCCTATCCCCAGTTCCCAACTACTGTTTCTAGCACCAATAATAATAA | |||||||||
gi|24074602|gb|BU883078.1|BU883078 UM86TA12 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence CAGCAGTGGAACACTGCTGT EST sequence (targeted fragment marked with yellow): GGAGCTAAGAAGCAGGCAGAGAGGAGATTAAGCAAAGTAAAACACTAGTAATTAATTATGGCAACCAGCTCGGTTATGGCTCCATCAATCAGCCTGAAACCAGCCCCTTTTACAGTCAAGAAACCTTCTTCAGTGAGAGGGCTCCCGACTCTTGCAAGGAGATCATCTTTCAAAGTTGAGGCTAGTCGTACGAGGAAGACCAACACTGATCAGCCTTATGGAATCAATGGTGGCATGGACTTGAGGGAAGGGGTTGATGCCTCTGGGAGGAAGGGCAAGGGAAAGGGAGTGTACCAATTTGTCGACAAATATGGTGCTAATGTTGATGGATACAGTCCTATTTACAACACTAATGATTGGTCTCCAAGTGGTGATGTTTATGTTGGGGGTAAGACTGGCTTGCTAATCTGGGCTGTTACCCTAGCTGGCCTTCTTGCAGGGGGAGCCCTTCTTGTTTACAGTACAAGTGCTTTGGCACAGTAGAGTTCTGCTGCT | |||||||||