| mature miRNA: CAGCCAAGGATGACTTGCCGA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|38575797|gb|CK091472.1|CK091472 F102P04.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F102P04 3', mRNA seque CAGCCAAGGATGACTTGCCGA EST sequence (targeted fragment marked with yellow): TTTACCAGCTCATCAAGCTGTGGACCTGTGCTGTCTCACTTCTCCAGAAACTATTATTCGTCAATGAGTAATGATGCGGAAGTAATAGAGTCTCTGTGTCAAATGCACCCTCATCAGACATATATGAGCAAAGGATGCACCCCGCAGTTTCACAGGTATCACCTTTCCAAATTTCCTTCACTTTCAGAAAAGATGGTGGGAGAAAGGGATAACAAATTATGGTGAGTGAGTAGGCCTCTCAATTGAAACTTCCAGCACAAGGAGTTGAGGGTCTCTCCAGCATTGTTAATTGTATGAAAGCCCGTTTAGCTGAAAGGTGTGGTGGATTCTACCAAACTCTGAGAAATCAAGGTGCCTCTTCATTGAGTTTGCTTATTCACTCTTGACACGCAGTAAGGATTTGTTGGGCGTATGTCTTTACCGCTCTATGCTTTCTTGCTTGCATCCTGTTGAAGGTGTTTCTTCGATCATTAGGGATTGTTTATAACCATTTAGAAAAAGCTAGAAACATCGACCCTGACTCACTTGGTGAGGAAGACTATATATCGTTGGCAAATCATTCTTGGCTTATTGTGTTGTCACTTTCTTTTCCTCAGTATTATGTAAAATTAGTGTCGTGTAATCTTGAGAATATCATATCGATCTTTTTGTGAAAAAAAAAAAAAAAAAAAACAACGCGGAG | |||||||||
gi|73887897|gb|DT490635.1|DT490635 WS02545.B21_I04 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02545_I04 3', mRNA sequence CAGCCAAGGATGACTTGCCGA EST sequence (targeted fragment marked with yellow): GATAAAATCTAGAAAGCCATATCTTCATGAATCTCGGCACCAGCATGCTATTAGAAGGGAAAGGAGCTCTGGAGGACGTTTTGCGAAGAAAAGTGGTGATGATGCTTCCAAGAACACATCTGAAAGAAAGCTCAATGGTTCTGGTCCACTTCGTGCATCTCAGTCAGGGAGTTCATCAGGTTCTGAACCATTCTCCTCTGACTCTGTTGAAACTTTGAAATCCTCTGATGGTCAAAAAGAAGCAAGGGCGTCCCAAGTGCATGACACTTTTGAAGCTTATGGGTATGCAAATAGAGATGGCCATTATCAGAACCACCATGGCTTGCAATCCTCTACATATGGCCTGTACTTGGGTGAAAACAAGGACGGAGACCGTTCACGTGAAAACGAGGATGAAGATCATCCAGGCTGGCAGCTGAGGAAGCAGGCCAAAACGTCTTCTGCCCACCAGTGAACCGTGCATGCTAAGTGGATGCCAGGACTGGAGGGTTGATTCACACAAGTAGAGAAACTTGAATCCTTCCCTTATCTGGCAACCACGCACCTGACAATATATTGCCAGGCGGCAAATCATTCTTGGCTTTTTTCATCTTCTTGCTTGTGGCTTGAACAGAGGGAAGAGATGGCGAATCCGTGGTTGGCTTCGTTTGTCGGCCAACGGGTTGCTTGCATCATTATTCTCGTTCTCTCACTTTTTTTCTTTTTCCTGTGTACACACAACTGTCAAGGAAACTCAACTAGAAGTAGTCTGGATAGATTTTAGTCTTATCAGCTCTTTAGTTTAACTTTGAAAATTGAAACTGTCTTGTTCGATCACTTGCAATTCAATGTAGCACTGGTTATTTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73890025|gb|DT492763.1|DT492763 WS02552.C21_E04 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02552_E04 3', mRNA sequence CAGCCAAGGATGACTTGCCGA EST sequence (targeted fragment marked with yellow): GGGGCAAACGAATGCCTTATCTTCACGAGTCCCGGCATCTACATGCTATGAGAAGGGCAAGAGGTTGTGGAGGCCGTTTTCTTAACACAAAGAAACCTGACACTACCAATAATACTGCACCTGATAAGCATACCAGCTCTGATGAAACTGTTTCAAGAAACTTTACCAGCTCATCAAGCTCTGGACCTGTGCTGTCTCACTTTTCCAGAAACTCTGATTCGTCAATGAGTAATGATGCGGAAGTAATAGAGTCTCTGTGTCAAATGCACCCTCATCAGACATATCTGAGCAAAGGATGCACCCCGCAGTTTCCCAGGTATCACCTTTCCAAATTTCCTTCACTTTCAGAAAAGATGGTGGGAGAAAGGGATAACAAATTATGGTGAGTGAGTAGGCCTCTCAATTGAAACTTCCAGCACAAGGAGTTGAGGGTCTCTCCAGCATTGTTAATTGTATGAAAGCCCGTTTAGCTGAAAGGTGTGGTGGATTCTACCAAACTCTGAGAAATCAAGGTGCCTCTTCATTGAGTTTGCTTATTCACTCTTGACACGCAGTAAGGATTTGTTGGGCGTATGTCTTTACCGCTCTATGCTTTCTTGCTTGCATCCTGTTGAAGGTGTTTCTTCGATCATTAGGGATTGTTTATAACCATTTAGAAAAAGCTAGAAACATCGACCCTGACTCACTTGGTGAGGAAGACTATATATCGTTGGCAAATCATTCTTGGCTTATTGTTTGTCACTTTCTTTTCTCAGTTTATGTAAAAAGGGTTCGTGTAATCTTGGAATATCATATCGATCTTTTAGAGATCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73887233|gb|DT489971.1|DT489971 WS02543.B21_K24 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02543_K24 3', mRNA sequence CAGCCAAGGATGACTTGCCGA EST sequence (targeted fragment marked with yellow): AAGAGAACAACGTGCAAAAGCAGAGGTTGACAAGAAGCTGATAAAAGCTAGAAAGCCATATCTTCATGAATCTCGGCACCGGCATGCTATGAGAAGGGAAAGGAGTTCTGGAGGACGTTTTGCGAAGAAAACTGGTGATGATGCTTCAAAGAACACATCCGAAGGCAAGCTCAATGGTTCTGGTCCGGTCCATGCATCTCAGTCACGGAGTTCATCAGGTTCTGAACTCTTGCCCTCTGACTCTGTTGAAACTTGGAATTCCTCTGAAGGTCAAAAGGAAGCAAGAGAGTCCCAAGTGCATGACACTTTTGAAGCTCATGACTATGTAAATAGAGGTGGCCACTATCAAAAACACAGTGGCTTGCAATCCTCTGCATATGGCTCTTACCTGGGTGACAATGAGGATGGAGACCGTTCAGGTGAAAATGAGGACGAAGACTGTCCAGGCCAGCAACTGGGGAACCAGGCCAAACGAAGGTTTTTTGGCCCACAGTGAACCCAGCATGTTAAGTGGATGCCAAGGTGGAGGGTCCAATTCACGCAAGTAGCGAAACTTGAATCCTCTCTCTTATCAGGCAACCACGCACTTGGCAATATATATTGCCAGGCGGCAAATCATTCTTGGCTTTTTCTTTTTCTTGCTTGTGGCTTGAACAGAGTGAAGGAGATGATGAATCCGTGGTTGGCTTCTTTTGTCTGCCAACGCTTCGCGTGCATCATTATTCTCTCTCTCTCTCTCTCTCTCCCCCTCTCCTTTTTCCTGTGTACATAGAACTGTCAAGGAAACTCAAGTAGAAGTAGTCTCTGGTTAGATTTTAGCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73893444|gb|DT496182.1|DT496182 WS01122.BR_K15 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01122_K15 5', mRNA sequence CAGCCAAGGATGACTTGCCGA EST sequence (targeted fragment marked with yellow): GTCCGACAAAAACACACTCATTCTCGATTCTCAGTCTCTCTTTCAAAAATGGATCGGAATGGCATCCTTGGTTGGACACTGATTTGCGTCCTTGTGGCCGGTGTCGGTGGCCAAGCACCGGCTGCGACGCCGACATCAACTCCGGCGACTCCAACAACTCCTTCCGTACCATTAGCTGCACCTGCTAAAGCACCTGCAAAACCTACAACGCCAGCACCCGTATCATCACCACCGGCGGTAACACCAGTAGCATCTTCACCGAAACAGACTGTTCCAACTCCAGTGGCGACGCCATTGGCTACACCACCTCCAGCCGTGACTCCAGTTAGCTCCCCACCGGCTCCGGTTCCTGTTAGCTCTCCACCAGAAAAATCTCCTCCGTCTCCAGTGCCTGTTGCTCCACCGACAAGCTCGCCTGTGGCAGCACCGACAGCAGAGGTCCCTGCTCCTACTCCGAGTAAAAAGAAGCCAAAGAAGGCACCGGCTCCTGGTCCAGCATTGTTGAGCCCACCCGCGCCACCAACGGAGGCTCCTGGACCTAGCGCAGAATCCATGTCTCCTGGTTCTATCGCTGACGACAGTGGAGCGGGAAGAACAAGATGCTTTCAGAAGATAGCAGGAGGTTTGGCATTGGGATGGGGTCTGCTTGCTTTGATCTTCTAGAGAGATAATGTTCTCATCATCCTCTCTCACCTGGAGTATTATTATTATTATTATTATTTTGATCACATTGGATATTATTTAAATTTATTTTGACACTGTCTGGTTAAGTTATTACTATTGGTACCCAAAAAAAAAAAAAAAA | |||||||||
gi|73895392|gb|DT498130.1|DT498130 WS0114.BR_H09 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0114_H09 5', mRNA sequence CAGCCAAGGATGACTTGCCGA EST sequence (targeted fragment marked with yellow): GGACAAAAACACACTCATTCTCGATTCTCAGTCTCTCTTTCAAAAAATGGATCGGAATGGCATCCTTGGTTGGACACTGATTTGCGTCCTTGTGGCCGGTGTCGGTGGCCAAGCACCGGCTGCGACGCCGACATCAACTCCGGCGACTCCAACAACTCCTTCCGTACCATTAGCTGCACCTGCTAAAGCACCTGCAAAACCTACAACGCCAGCACCCGTATCATCACCACCGGCGGTAACACCAGTAGCATCTTCACCGAAACAGACTGTTCCAACTCCAGTGGCGACGCCATTGGCTACACCACCTCCAGCCGTGACTCCAGTTAGCTCCCCACCGGCTCCGGTTCCTGTTAGCTCTCCACCAGAAAAATCTCCTCCGTCTCCAGTGCCTGTTGCTCCACCGACAAGCTCGCCTGTGGCAGCACCGACAGCAGAGGTCCCTGCTCCTACTCCGAGTAAAAAGAAGCCAAAGAAGGCACCGGCTCCTGGTCCAGCATTGTTGAGCCCACCCGCGCCACCAACGGAGGCTCCTGGACCTAGCGCAGAATCCATGTCTCCTGGTTCTATCGCTGACGACAGTGGAGCGGGA | |||||||||