mature miRNA: CAGCCAAGGATGACTTGCCGG species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|38575797|gb|CK091472.1|CK091472 F102P04.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F102P04 3', mRNA seque CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): TTTACCAGCTCATCAAGCTGTGGACCTGTGCTGTCTCACTTCTCCAGAAACTATTATTCGTCAATGAGTAATGATGCGGAAGTAATAGAGTCTCTGTGTCAAATGCACCCTCATCAGACATATATGAGCAAAGGATGCACCCCGCAGTTTCACAGGTATCACCTTTCCAAATTTCCTTCACTTTCAGAAAAGATGGTGGGAGAAAGGGATAACAAATTATGGTGAGTGAGTAGGCCTCTCAATTGAAACTTCCAGCACAAGGAGTTGAGGGTCTCTCCAGCATTGTTAATTGTATGAAAGCCCGTTTAGCTGAAAGGTGTGGTGGATTCTACCAAACTCTGAGAAATCAAGGTGCCTCTTCATTGAGTTTGCTTATTCACTCTTGACACGCAGTAAGGATTTGTTGGGCGTATGTCTTTACCGCTCTATGCTTTCTTGCTTGCATCCTGTTGAAGGTGTTTCTTCGATCATTAGGGATTGTTTATAACCATTTAGAAAAAGCTAGAAACATCGACCCTGACTCACTTGGTGAGGAAGACTATATATCGTTGGCAAATCATTCTTGGCTTATTGTGTTGTCACTTTCTTTTCCTCAGTATTATGTAAAATTAGTGTCGTGTAATCTTGAGAATATCATATCGATCTTTTTGTGAAAAAAAAAAAAAAAAAAAACAACGCGGAG | |||||||||
gi|73887894|gb|DT490632.1|DT490632 WS02545.B21_I01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02545_I01 3', mRNA sequence CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): GGTTCAAGACATGCAAACACACGCTTCCTCCAATTGCCATGGTAATGGCAATGGACTCTCATCAAGATATCATTCATTATCAGATGATGGCAGCTTCTTGGGTCAGCAGAAGGAAACCACACATGGGAATGGGGTGTCTAATGGGAACGTCTCCATTTATTAAATTTCCACCTTGAGTTGCAAAGCTGGAGGCATCAGCCATGTCCAACTTGGGGGGCGAAACTTTCAGCGTGTGGTGTTTCTCAGGCAATTCATTCTTGGCTTTGGGTCTTTGTTACTTGGTGCATGCTGGTGGTGTGAGTGGAGCATATCATATGTTGTGATGGACTTCATGCTGTCTTCAGACTTGAACTAATTGCATCTCTCTTCTTTTCGTCGCTTCTGTAAATATGGCAAAAACTAGTGTATCTACCTTGCAGGAATTAATCCCAAATGTAGTAATTCCAGTGGTCTGCGTTTGAACTTAACTTTCGTGTGATCATTTCTTTATGTGTGAACAGAGGGTTTACCTCATGTACCCTAAAAAAAAAAAAAAAAAA | |||||||||
gi|73887897|gb|DT490635.1|DT490635 WS02545.B21_I04 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02545_I04 3', mRNA sequence CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): GATAAAATCTAGAAAGCCATATCTTCATGAATCTCGGCACCAGCATGCTATTAGAAGGGAAAGGAGCTCTGGAGGACGTTTTGCGAAGAAAAGTGGTGATGATGCTTCCAAGAACACATCTGAAAGAAAGCTCAATGGTTCTGGTCCACTTCGTGCATCTCAGTCAGGGAGTTCATCAGGTTCTGAACCATTCTCCTCTGACTCTGTTGAAACTTTGAAATCCTCTGATGGTCAAAAAGAAGCAAGGGCGTCCCAAGTGCATGACACTTTTGAAGCTTATGGGTATGCAAATAGAGATGGCCATTATCAGAACCACCATGGCTTGCAATCCTCTACATATGGCCTGTACTTGGGTGAAAACAAGGACGGAGACCGTTCACGTGAAAACGAGGATGAAGATCATCCAGGCTGGCAGCTGAGGAAGCAGGCCAAAACGTCTTCTGCCCACCAGTGAACCGTGCATGCTAAGTGGATGCCAGGACTGGAGGGTTGATTCACACAAGTAGAGAAACTTGAATCCTTCCCTTATCTGGCAACCACGCACCTGACAATATATTGCCAGGCGGCAAATCATTCTTGGCTTTTTTCATCTTCTTGCTTGTGGCTTGAACAGAGGGAAGAGATGGCGAATCCGTGGTTGGCTTCGTTTGTCGGCCAACGGGTTGCTTGCATCATTATTCTCGTTCTCTCACTTTTTTTCTTTTTCCTGTGTACACACAACTGTCAAGGAAACTCAACTAGAAGTAGTCTGGATAGATTTTAGTCTTATCAGCTCTTTAGTTTAACTTTGAAAATTGAAACTGTCTTGTTCGATCACTTGCAATTCAATGTAGCACTGGTTATTTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|52497152|gb|CV244177.1|CV244177 WS0253.B21_P07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0253_P07 3', mRNA sequence CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): TGAGGCGAAGACAGGCACGTGCTAAGGCAGAGCTTGAAAAAAAGGCAGTAAAAGTTAGAAAGCCATATCTACATGAGTCTCGACACCAACATGCTTTGAGAAGGGCAAGAGGTTGTGGTGGCCGTTTTCTCAATACAAAGAAGCTTGATAACAGCGCTACCAATCCCACATCAGAAAAGGGTAGTGGAGATTTGAATTCCTCTGGCGATCTGGAAGAAGGAAAAGGGTCACAGGCTTCCTCCAATGGTCATGGTAATGGCCATGCACTCTCATCAAGATATCATTCATCATCACATGATGGCAGCTTCTTGGGTCAGCAAAAGGAAACCACACACGGGAATAGGGTGTCTAATGGAGCTGTCTCCATTCATTAAACTTCCACCTCGAGTTGTACGGGGCCTTCAGCATTGCTACATTGGTTTGATTATTAACTCCAATAGAGACATCGTTTAATTTCCTTTTTCTCCTGGCTAGTCTTTGTATCTTATGGAAGGGTTTGCCTTCTGCAGGAAAAGCTGGAGGCATTAGCCATGTTCAACTTGGGAGGAAACCTTTCCTGTGCTGTGTTTCTCAGGCAATTCATTCTTGGCTTTAGGTCTTTGGTTACTTGGTGCATTCATGGTGGTGAGAGTGTAGTATATGTGATGGACTTCATGCTGTCTTCAGACTTGAACTAATTTCATCTCTCTTCTTTTAGTCGCTTCTGTAAAAATGGCAAAAACTTGTGTATCTACCTCGTAGAAATTACTCTCGAACGTAGTAATTCCAAATGGTCTGCATTTTAAGTTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|52494504|gb|CV241529.1|CV241529 WS02512.B21_H14 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02512_H14 3', mRNA sequence CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): GTGGAATTCTGAGAAGGAGACAATCACGGGCAAAACTTGAGGCTCAAAACAAACTTGTGAAAAATCGAAAGCCATACCTTCATGAGTCTCGGCACATTCATGCCTTAAATAGGGTTCGAGGATCTGGTGGACGCTTTCTCAGCACAAAAAAGCTCCAACGATCTGATCCCACTTCCTCTCATGGCCAGTGTAATGTCCTAGATACCATCCACTTGCACCCAAAGAATAATGCATCCGAACTTGAAAGCTTCCAATCAAGAACTGGTCAATCCAGTGCCTCAAATACAACCCGCTCTGACACCACCAGTGTCTCCAACAGTGATGTCAATTTCAGGCAGCCAGATCGCGGATTCTCAGGTATTGCTGCTCACCTTGTTGGAGGCAGGCAAATCAATGGTGGGCTTATGAGCAGTGGAAACCAACACCATGCTTCTGTTGTTCGGTGAAAATGCGGAATAAGAAGACCGTGTCACCGGTCCAGGCAATTCATCCTTGGCTTTGTGTCTTTACTTGGTACAAAAAGTGCATGAAGGACACTGTTATGTATTTGATTTCTCTGCTGTTTGCTTTCTTTCTATATATACATCCTCCGTTTGTCAAAAGAAAAAAAAAAAAAAAAAA | |||||||||
gi|24063353|gb|BU871829.1|BU871829 Q035A07 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): GAGCAAAGGAAACCCACACGGGAATAGGGTGTCTAATGGAGCTGTCTCCATTCATTAAACTTCCACCTCGAGTTGTACGGGGCCCTTCAGCATTGCTACACTGGAAAAGCTGGAGGCATTATCCATGTTCAACTTGGGAGGAAACTTTTCCTGTGCTGTGTTTCTCAGGCAATTCATTCTTGGCTTTCGGTCTTCGGTTACTTGTTGCATTCATGGTGGTGAGAGTGTTGCATATGTGGTGATGGACTTCATGTTGTCTTCAGACTTGAACTAATTTCATCTCTCTTCTTTTAGTCGCTTCTGTAAAGATGGCAAAAACTTGTGCATCTACCTAGTAGAAATTACTCTCGAATGTGGTAATTCCAAATGGTCTGCATTTGAACTTTCATGTGACCTCTTCTTTATGTGTGAGCAAAGGGTTCTTCTACCCTAA | |||||||||
gi|73884268|gb|DT487006.1|DT487006 WS02532.B21_I12 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02532_I12 3', mRNA sequence CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): ATATGGTGGGGATGACAGCTGGACGAGTCCCACTCCCTGTTGATCTTGCAGATGATGGACCAATTTATGTTAATGCTAAACAGTACCGTGGAATTATCAGAAGGAGACAATCACGGGCAAAGCTTGAGGCTCAAAACAAACTGGTAAAAAATCGAAAGCCATACCTTCACGAGTCTCGGCACATTCATGCCTTGAATAGGGTTCGAGGATCTGGTGGACGCTTTCTCAGCAAAAAAAAGCTCCAGGAATCTGATCCCACTCCTAGTCAGTGTAATGTCACAGATACCATCCACTCACACGTAAAGAATGATGCATCAGAACTAAAAAGCTATCAGTCTGGAACCGGACAATCTGGTGCCTCAAATACTACCTGCTCTGACATCACCAGTGTCTCCTACAGCAATGTCACTTTTAGGCAGCCAGAACGCCGGTTCTCAGGTATTGCTACTCACCTTGGTGGAGGCATGGAAATCAACAGTAGGCTTATTTGCAGAGGAACCCAACACCACACTTCCGTTGTTCAGTGAAAATATGGAAGAAGACCGTGTAATCGGTCAGGCAATTCATCCTTGGCTTCGTCTCTTTTACTAAGAACTAAATGTGCACGACGGACACTGTTATGTATTTGATCTCTCTGGGGTTTGCTTTTTTTTTTTTTTGTTTATACATCCTCGGGCATGTCAAAATGGTTGGAAAGAGTTTTGTGTTTGAAACCCATCACTGGGTTACACTGATTGTTAAATATGGCAAACGATGCAAGTGTTTTCTCATCAGATTATCAAATAAAAGATCAGACTTGGGGCTTTGATCTAGCAAACAAAAAAAAAAAAAAAAAA | |||||||||
gi|73890025|gb|DT492763.1|DT492763 WS02552.C21_E04 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02552_E04 3', mRNA sequence CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): GGGGCAAACGAATGCCTTATCTTCACGAGTCCCGGCATCTACATGCTATGAGAAGGGCAAGAGGTTGTGGAGGCCGTTTTCTTAACACAAAGAAACCTGACACTACCAATAATACTGCACCTGATAAGCATACCAGCTCTGATGAAACTGTTTCAAGAAACTTTACCAGCTCATCAAGCTCTGGACCTGTGCTGTCTCACTTTTCCAGAAACTCTGATTCGTCAATGAGTAATGATGCGGAAGTAATAGAGTCTCTGTGTCAAATGCACCCTCATCAGACATATCTGAGCAAAGGATGCACCCCGCAGTTTCCCAGGTATCACCTTTCCAAATTTCCTTCACTTTCAGAAAAGATGGTGGGAGAAAGGGATAACAAATTATGGTGAGTGAGTAGGCCTCTCAATTGAAACTTCCAGCACAAGGAGTTGAGGGTCTCTCCAGCATTGTTAATTGTATGAAAGCCCGTTTAGCTGAAAGGTGTGGTGGATTCTACCAAACTCTGAGAAATCAAGGTGCCTCTTCATTGAGTTTGCTTATTCACTCTTGACACGCAGTAAGGATTTGTTGGGCGTATGTCTTTACCGCTCTATGCTTTCTTGCTTGCATCCTGTTGAAGGTGTTTCTTCGATCATTAGGGATTGTTTATAACCATTTAGAAAAAGCTAGAAACATCGACCCTGACTCACTTGGTGAGGAAGACTATATATCGTTGGCAAATCATTCTTGGCTTATTGTTTGTCACTTTCTTTTCTCAGTTTATGTAAAAAGGGTTCGTGTAATCTTGGAATATCATATCGATCTTTTAGAGATCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73884445|gb|DT487183.1|DT487183 WS02533.B21_A01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02533_A01 3', mRNA sequence CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): CATGCTTTTATTCACCCCCATTGGGGTTCTCATATGGGGGGGAGGACAGCTGGACGAGTCCCCCTCCCTGTTGATTTTGCAGATGATGGCCCAATTTATGTTAATGCTAAACAGTCCCGTGGAATTATCAGAAGGAGACAATCCCGGGCAAAGCTTGAGGCTCAAAACAAACTGGTAAAAAATCGAAAGCCATACCTTCACGAGTCTGGGCACATTCATCCCTTAAATAGGGTTCGAGGATTTGGGGGACGCTTTTTCAGCAAAAAAAAGCTCCAGGAATCTGATCCCCCTCCTAGTCAGGGTAATGTCCCAGATCCCATCCCCTCCCCCGTAAAAAATGATGCATCAGAACTAGAAAGCTATCAGTCTGGAACCGGACAATTTGGTGCCTCAAATACTCCCTGCTCTGACATCCCCAGTGTTTCCTACACCAATGTCACTTTTAGGCACCCAAAACCCCGGTTTTCAGGTATTGCTACTCCCCTTGGGGGAGGCATGGAAATCAACAGTAGGCTTATTTGCAGAGGAACCCAACCCCCCCCTTCCGTTGTTCAGGGAAAATATGGAAGAAGCCCGGGTAATCGGTCAGGCAATTCATCCTTGGCTTGGTTTTTTTTACTAAAAACAAAATGTCCCCGACGGCCCCTGTTATGTATTTGATCTTTCTGGGGTTTGCTTTTTTTTTTTTTTGTTTAAACATCCTCGGGCATGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA | |||||||||
gi|52498514|gb|CV245539.1|CV245539 WS0257.B21_L06 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0257_L06 3', mRNA sequence CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): CCATTTATGTTAATGCTAAACAGTACCATGGAATTCTGAGAAGGAGACAATCACGGGCAAAACTTGAGGCTCAAAACAAACTTGTGAAAAATCGAAAGCCATACCTTCATGAGTCTCGGCACATTCATGCCTTAAATAGGGTTCGAGGATTTGGTGGACGCTTTCTCAGCACAAAAAAGCTCCAACGATCTGATCCCACTTCCTCTCATGGCCAGTGTAATGTCCTAGATACCATCCACTTGCACCCAAAGAATAATGCATCCGAACTTGAAAGCTTCCAATCAAGAACTGGTCAATCCAGTGCCTCAAATACAACCCGCTTTGACACCCCCAGTGTCTCCAACAGTGATGTCAATTTCAGGCAGCCAGATCGCGGATTTTCAGGTATTGCTGCTCCCCTTGTTGGAGGCAGGCAAATCAATGGTGGGCTTATGAGCAGTGGAAACCAACCCCATGCTTTTGTTGTTCGGTGAAAATGCGGAATAAGAAGACCGTGTCCCCGGTCCAGGCAATTCATCCTTGGCTTTGTGTCTTTACTTGGTACAAAAAGTGCATGAAGGACCCTGTTATGTATTTGATTTTTTTGCTGTTTGCTTTCTTTCTATATATACATCCTCCGTTTGTCAACATGGTTGAAAAGAGTTTGTCTTTGAAATCCATCCTCTGGTTGCCCTGATTGTTAAATATGGTAACTATGCAAGTATTTGCTCATCAGATTATCAAATAAATATCAGACTTGGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA | |||||||||
gi|73887233|gb|DT489971.1|DT489971 WS02543.B21_K24 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02543_K24 3', mRNA sequence CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): AAGAGAACAACGTGCAAAAGCAGAGGTTGACAAGAAGCTGATAAAAGCTAGAAAGCCATATCTTCATGAATCTCGGCACCGGCATGCTATGAGAAGGGAAAGGAGTTCTGGAGGACGTTTTGCGAAGAAAACTGGTGATGATGCTTCAAAGAACACATCCGAAGGCAAGCTCAATGGTTCTGGTCCGGTCCATGCATCTCAGTCACGGAGTTCATCAGGTTCTGAACTCTTGCCCTCTGACTCTGTTGAAACTTGGAATTCCTCTGAAGGTCAAAAGGAAGCAAGAGAGTCCCAAGTGCATGACACTTTTGAAGCTCATGACTATGTAAATAGAGGTGGCCACTATCAAAAACACAGTGGCTTGCAATCCTCTGCATATGGCTCTTACCTGGGTGACAATGAGGATGGAGACCGTTCAGGTGAAAATGAGGACGAAGACTGTCCAGGCCAGCAACTGGGGAACCAGGCCAAACGAAGGTTTTTTGGCCCACAGTGAACCCAGCATGTTAAGTGGATGCCAAGGTGGAGGGTCCAATTCACGCAAGTAGCGAAACTTGAATCCTCTCTCTTATCAGGCAACCACGCACTTGGCAATATATATTGCCAGGCGGCAAATCATTCTTGGCTTTTTCTTTTTCTTGCTTGTGGCTTGAACAGAGTGAAGGAGATGATGAATCCGTGGTTGGCTTCTTTTGTCTGCCAACGCTTCGCGTGCATCATTATTCTCTCTCTCTCTCTCTCTCTCCCCCTCTCCTTTTTCCTGTGTACATAGAACTGTCAAGGAAACTCAAGTAGAAGTAGTCTCTGGTTAGATTTTAGCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73879070|gb|DT481808.1|DT481808 WS02533.BR_A01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02533_A01 5', mRNA sequence CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): GGTGTGGGTGTGGTGGTCTGGAGAGTTTCAAGAGAGGGAGACATGTCCAACTTCTTCCCTACAGCCTCCTCTTGAAATTCTTTGCTTCTTCTTCAACTACTACTTATTGACTTCCTTATCAGATCCCAAGGATGAAAGTTGTGGGAAGGGCGTGAAGGGAAAAATGAAGCCAGTTCTCTTGTTGAGTACTCCAGATAGCGTGTCTAATCACTCACAAGCTGATTGTAGCTATTCAATGGTTCGTGCTCCATATGCTGATCCTTACTTTGGTGGGCTGTGTAATCCATATGAACTTCATGCTTTTATTCAGCCCCATCTGGGTTCTCATATGGTGGGGATGACAGCTGGACGAGTCCCACTCCCTGTTGATCTTGCAGATGATGGACCAATTTATGTTAATGCTAAACAGTACCGTGGAATTATCAGAAGGAGACAATCACGGGCAAAGCTTGAGGCTCAAAACAAACTGGTAAAAAATCGAAAGCCATACCTTCACGAGTCTCGGCACATTCATGCCTTGAATAGGGTTCGAGGATCTGGTGGACGCTTTCTCAGCAAAAAAAAGCTCCAGGAATCTGATCCCACTCCTAGTCAGTGTAATGTCACAGATACCATCCACTCACACGTAAAGAATGATGCATCAGAACTAGAAAGCTATCAGTCTGGAACCGGACAATCTGGTGCCTCAAATACTACCTGCTCTGACATCACCAGTGTCTCCTACAGCAATGTCACTTTTAGGCAGCCAGAACGCCGGTTCTCAGGTATTGCTACTCACCTTGGTGGAGGCATGGAAATCAACAGTAGGCTTATTTGCAGAGGAACCCAACACCACACTTCCGTTGTTTCAGTGAAATATGGAAGAAGACCGTGTAATCGGTCAGGCAATTCATCCTTGGCTTCGTCTCTTTTAC |