| mature miRNA: CATCTCCAGCTGCTTGAGCGG species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73887849|gb|DT490587.1|DT490587 WS02545.B21_G01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02545_G01 3', mRNA sequence CATCTCCAGCTGCTTGAGCGG EST sequence (targeted fragment marked with yellow): GTTCAGAGATCGAACGCTTCCGCCATCGCCGACTTGTCCTCAGTTTTGCACTTCACGTTCTTAACAACGGCAGTGAAGATCAAGAGAAGCTGACAAGAGCTAGGGTTTCATTATCTGATTGGGTAAATAATTACAAAGGACCCATATTTGATAGCAACAACAATTTGGAGAATTTAGCGAGAGATTTGGCATTGAGGCTTAAGGAGGTTCCACGTGGAAAGATCTCAGCCGATGAAAGGCTAGTTCGCCGTACGATCTTCGCCGTTGGGTTAGTAACGGTATTCGTTGCTGGAGTTGTGGTCACGGCGTTACGTGGATCCACGGGCTTAGTTGTTGCCGTTAGAGCGCCGCCTGAGTTTTTGTGGGCCGACTCGTTCAATTTTCTCAACACAATGATTTCAAATAGGCCAGACAAAAAGAGGTATCTACTCAACGAGCTTGATGAGATGGAGGCGCGTATTAAGGAAGTGAGTGGCGTCATGGTCGACGGTAGCGGAGAGAACGGGGAAAGGTCAAGCAGTGCCGTTAAGGAGCTGGAGATGGTGACGGAGAGGTTAGGAGGGGGATTGGATAGGTTGGGTAACGGCGTGAATGAAGTATTCAATTCGGTTTTGAGTACTAGAAAGGGGATGCTGGAGAAAATGAGAGTGGGTCCACCACAGGAGAAACGAAGCGATGCTAAAAAGGTTACAAGTAACCTATACACTTAGCGTGTACTGGATAATGTGTCTCCTGGTGTTTCTAGAATAGTTTAAAATACAATAAAAGTTTTTTATACAAAAAAAAAAAAAAAAAA | |||||||||
gi|73884896|gb|DT487634.1|DT487634 WS02534.B21_D18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02534_D18 3', mRNA sequence CATCTCCAGCTGCTTGAGCGG EST sequence (targeted fragment marked with yellow): GAATAATTTGAAAGTTTGAAAAAATTCCCATTATGCCAAGCTATACATACACACACGCACAGCACTTCTGACTCCTCCTTCTCACTCTTAGCGGCATAGGAGCTCCAGCAACGCAGCAGCAGCAGATCCAGTGTATCCAGCAGTGGATCGAGCTCCACCAGCAGCAGCAGCGAATCCAGCATCTCCAGCTGCTTGAGCGGCGGCAGGGATGGCTCCAGTTGCTCGAGGAGCGGCGGCTGCTCAAGCAGCTGCAGATCCATTGGATCCAGAAGTGCAAGCAGCTGCAGAAGCGGCAGCTGTGGGAGCTGCTGTGGGAGCCGCAGCTGGAGCGGGAGCAGGAGCGGCTGCGGGAGCTGGAGCGGCGGCTTCGGGAGCTGGAGCGGCGGTTGCTGGAGCAGCGGCTGCGGCTGCTGGAGCAGCGGCTGCGGCTTATGGAGCAGCGGCTGCGGCTGCTGGAGCGGCGGCTGGAGCAGCTGCCGCTGAGTTTTGGGTAATATTATTTATGTTAATAAATTAATATAAAAAAAGAAGATAAAGAGATACATCTTGATTATAACCATCAAAGATTTTAACTGTTCATAAAAAAAAAAAAAAAAAA | |||||||||
gi|52399955|gb|CV238365.1|CV238365 WS0126.B21_F15 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS0126_F15 3', mRNA sequence CATCTCCAGCTGCTTGAGCGG EST sequence (targeted fragment marked with yellow): CAGAGAGGCACTGCAACTACAATTAGATGTCCAGAGGCGTCTGCATGAGCAGCTGGAGATTCAAAGAAATCTACAACTACGTATTGAAGAGCAAGGCAAGCAGCTTAAGATGATGTTTGATCAGCAGCAGAAAACAACTAATAGTCTCCTGAATAAGCAGAATTTGGACATTACTTCTCCGGATGAGCCCGCATTTAGCCTTGAAGATATTGATGTTTCCATTTTAGAAGGCTCTGATAATAATACACAATTCCCATCCAAGATAAGTTAGATCTTCAAAGCACATAGGACTGGTTTTCATGTACAAGTAGGCACTCATGGGTTCTGGAAAAGTGATTTCTAGTCCCCAGCTACAACAGAATTGCGGATGATCTCTGCTTCTTCATAAAGAAAGTAAAAGCATCTGAATGTACCTATATAGGAAGAGTATATACATACGAATACGATGTGTGTTCCCATGCATAATACCCTTTAGAACTTGGAGGTTGGGATTCTTTGCAAAACAGAAAGTCATGTGGTTCTTGTAGGGTTCAAGTTTCCTGAGTTCTCCATCAGCTTTAGAACGATAGTCTTGCATTGCTATGTACTTCAAGTTCATCATAATAAAAATGTACCAGAGTTTTGATACAAAAAAAAAAAAAAAA | |||||||||
gi|73888904|gb|DT491642.1|DT491642 WS02548.C21_F14 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02548_F14 3', mRNA sequence CATCTCCAGCTGCTTGAGCGG EST sequence (targeted fragment marked with yellow): CCCCAAACCAAAACCATGAGCAAAAACTGACGAAGATCTTCAAGCTAAAGCAAGTTAGATTCCAAACCAAACCCAAGGCAGCTGCTGGTGCTGGTGCTGCTGCTGCTCGAGCTGCTGCTGCTGCTCAAGCACCAGCTGCTGCTGCTGCTCCTCCAGCAGCCGCCGCTGCTCCTCCAGCAGCTGCCGCCGCTCCAGCCGCCGCCGCCGCCGCTCCAGCAGCCGCCGCCGCTGCTCCAGCAGCTCCATCCGCAGCCGCTGCTCCTCCAGCTCCAGCCGCCGCAGCCGCTGCAGCTGCTGCTGCCGCTCCTCCAGCTGCTGCTGCCGCTCCTCCAGCAGCTGCTGCTGCTGCCCCTCCAGCAGCTCGAGATGCTCCTCACGCTGCTGCTCAGACAAGTGCTCGCGCTTCTGGATCCAATGGATCCGCTGCTGGAGCCACCGCTGAAGCAGCCGCCACTTCTGCTTCCGCCGCCGGTGCTGGAGCAGCGGTTGCAGGAGCTGCCGCTCGAGCAGCTGGAGCGATCCCTGCCACTGCTTGACCAGTTGGAGATGCTGGATCCGCTGCTTGTGGAGGTGGAGGTGGAGCTGGAGCTGGATCTCCTGCTGCGGCGTTGCTGGAGCTCCTTTGCCGCTGAGAGTGAGAAGGAGAGGTCAGAAGTGTTGTGTGTGTATATATATAGCTTTGCATAATGGGAATTTTCTCAAACTTTAAAATTATTAATGCATTTTGTAGGGTTGAACAGTATCCCTCCAAACCAAAGTAAATTGTTACTGAATAAAAAAAATTTCTATCATTTGAAGGGGCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73888904|gb|DT491642.1|DT491642 WS02548.C21_F14 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02548_F14 3', mRNA sequence CATCTCCAGCTGCTTGAGCGG EST sequence (targeted fragment marked with yellow): CCCCAAACCAAAACCATGAGCAAAAACTGACGAAGATCTTCAAGCTAAAGCAAGTTAGATTCCAAACCAAACCCAAGGCAGCTGCTGGTGCTGGTGCTGCTGCTGCTCGAGCTGCTGCTGCTGCTCAAGCACCAGCTGCTGCTGCTGCTCCTCCAGCAGCCGCCGCTGCTCCTCCAGCAGCTGCCGCCGCTCCAGCCGCCGCCGCCGCCGCTCCAGCAGCCGCCGCCGCTGCTCCAGCAGCTCCATCCGCAGCCGCTGCTCCTCCAGCTCCAGCCGCCGCAGCCGCTGCAGCTGCTGCTGCCGCTCCTCCAGCTGCTGCTGCCGCTCCTCCAGCAGCTGCTGCTGCTGCCCCTCCAGCAGCTCGAGATGCTCCTCACGCTGCTGCTCAGACAAGTGCTCGCGCTTCTGGATCCAATGGATCCGCTGCTGGAGCCACCGCTGAAGCAGCCGCCACTTCTGCTTCCGCCGCCGGTGCTGGAGCAGCGGTTGCAGGAGCTGCCGCTCGAGCAGCTGGAGCGATCCCTGCCACTGCTTGACCAGTTGGAGATGCTGGATCCGCTGCTTGTGGAGGTGGAGGTGGAGCTGGAGCTGGATCTCCTGCTGCGGCGTTGCTGGAGCTCCTTTGCCGCTGAGAGTGAGAAGGAGAGGTCAGAAGTGTTGTGTGTGTATATATATAGCTTTGCATAATGGGAATTTTCTCAAACTTTAAAATTATTAATGCATTTTGTAGGGTTGAACAGTATCCCTCCAAACCAAAGTAAATTGTTACTGAATAAAAAAAATTTCTATCATTTGAAGGGGCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73890223|gb|DT492961.1|DT492961 WS02552.C21_P19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02552_P19 3', mRNA sequence CATCTCCAGCTGCTTGAGCGG EST sequence (targeted fragment marked with yellow): GAGCTGCTCCAGCCGCCGCTCCAGCAGCCGCAGCCGCTGCTCCATAAGCCGCAGCCGCTGCTCCAGCAGCCGCAGCCGCTGCTCCAGCAACCGCCGCTCCAGCTCCCGAAGCCGCCGCTCCAGCTCCCGCAGCCGCTCCTGCTCCCGCTCCAGCTGCGGCTCCCACAGCAGCTCCCACAGCTGCCGCTTCTGCAGCTGCTTGCACTAAAAAATCCAATGGATCTGCAGCTGCTTGAGCAGCCGCCGCTCCTCGAGCAACTGGAGCCATCCCTGCCGCCGCTCAAGCAGCTGGAGATGCTGGATTCGCTGCTGCTGCTGGTGGAGCTCGATCCACTGCTGGATACACTGGATCTGCTGCTGCTGCGTTGCTGGAGCTCCTATGCCGCTAAGAGTGAGAAGGAGGAGTCAGAAGTGCTGTGCGTGTGTGTATGAATAGCTTGGCATAATGGGAATTTTTTCAAACTTTCAAATTATTAATGCATTTTGGGTAGGAG | |||||||||
gi|60711144|gb|DN500954.1|DN500954 UM41TE05.5pR Populus female catkins cDNA library Populus trichocarpa cDNA clone UM41TE05 5', CATCTCCAGCTGCTTGAGCGG EST sequence (targeted fragment marked with yellow): AGAACTCTCTTGTACCTAACAGAAGCGAGATAGAAGAGTCATGCAAGCAACTGTACCAGTTTCATCATCACTTCATACAACAAGTACAGCAGCAGACCCAACAGCGCTCTCCACACAGACCAACAACATGGCTCTTGTCCCTGCCCCACCATCAGAAACCCCACTTTTTGCAGAAGTAGACATGTGTTCCGATTCTTCAGCAACGACTGTCCGTGCCACTGTTATCCAAGCCTCCACTGTCTTCTATGACACTCCTGCCACTCTAGATAAGGCTGAGAGATTTCTGGCTGAAGCAGCTGGATATGGGTCTCAATTGGTTGTGTTTCCTGAAGCATTTATTGGTGGTTATCCTAGAGGATCAAGTTTTGGTGCTACCATTGGTAGTCGTACAGCTAAAGGTAGAGAGGATTTCAGAAAGTATCATGCTTCAGCCATTGATGTTCCTGGTCCAGAAGTTGACCGTTTGGCTGCAATGGCTGGGAAGTATAAGGTGTATTTGGTGATGGGTGTGATTGAGAGGGAGGGATATACACTCTACTGTACCGTGTTGTTTTTTGATTCTCAAGGTCATTACATGGGGAAGCATAAGAAAGTTATGCCGACGGCGGTGGAGCGTATAGTATGGGGTTTTGGAGATGGATCAACGATTCCGGTTTTTGGGACTCCGATTGGGAAAATTGGTGCCCCTATCTGTTGGGAAAATAGAATGCCACTCCTAAGGACTGCAATGTATGGTAAAGGTATTGAAATA | |||||||||
gi|73879848|gb|DT482586.1|DT482586 WS02520.B21_D16 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02520_D16 3', mRNA sequence CATCTCCAGCTGCTTGAGCGG EST sequence (targeted fragment marked with yellow): AGACAATTATGAGAACAATGGGGGTAAAAGGCCTCACCCTTTATCACTGAAAATCTCACCTACAGAAATACCGGTTGGGAAAGCAGTCCTGCAAGGAATCAACTGATAACTCCAAGGATGTTGGGATTGCACCATCAGTTGCAGAAAGTCAGGATACTGGTTCATCGACATCTGCATCATCAAGAATGATTGCGCAGGATCTGAATGATGGTTACCAGGTTACTGAGGCTTTGAGAGTGCAGATGGAAGTCCAACGAAGATTGCATGAGCAGCTGGAGGTGCAACATCATCTCCAACTTCGCATTGAAGCTCAGGGGAAATACTTACAGTCAATACTTGAGAAAGCTTGTAAAGCTCTGAATGACCAGGCTGTTGCAACTGCAGGACTTGAAGCTGCTAGGGAAGAGCTTTCTGAATTAGCAATCAAGGTTTCCAATGAATGTGCAGGAATTGCCCCACTTGATACCATGAAAATGCCTTCCTTATCTGAACTTGCTGCTGCTTTAGGGAACAGAAATGCTTCCAATGTGCCTGCTCGCATTGGTGATTGCTCTGTCGAAAGCTGCTTGACTTCAACTAGTAGCCCAGTTTCTCCCATGGGTGTGGGCTCACAAGTTGCTTCCACGAAGAAAAGATCAAGGCCTGTGCTTGGTAACGGAGATTCATTGCCCTTCGAAGGCAACTTTCGGCAAGAAGTAGAATGGACAATGAGTAATATTGTGGATGAATAGCAAGGCATTTCCATCTTAGAAACAGAAACTTCTTTGTTTCTTTTTTTAGCTGTCTAGCTGATCTAAATGTCAAATCTTAATCAACTATATCATCAGTGGCCTGTATATGTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|52385642|gb|CV231285.1|CV231285 WS0194.B21_B04 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS0194_B04 3', mRNA sequence CATCTCCAGCTGCTTGAGCGG EST sequence (targeted fragment marked with yellow): TTGTTGAGTGCGTAAATCGCCTTGGAGGCGCTGAGAAGGCAACACCTAAAGCAATACTAAACTTGATGGATTCAGATGGTTTGACTATCTTCCATGTGAAAAGTCATCTGCAGAAATATAGAATTGCAAAATACATGCCAGAACCTTCAGCAGGAAAGGCTGAGAAAAGAAATAGCATAAATGATGTATCACAGCTCGATATCAAAACTGGCTTTCAAATCAGAGAGGCACTGCAACTACAATTAGATGTCCAGAGGCGTCTGCATGAGCAGCTGGAGATTCAAAGAAATCTGCAACTACGTATTGAAGAGCAAGGCAAGCAACTTAAGATGATGTTTGATCAGCAGCAGAAAACAACTAATAGTCTCCTGAATAAGCAGAATTTGGACATTACTTCTCCTGATGAGCCCACATTTATCCTTGAAGATATTGATGTTTCCATTTTAGAAGGCTCTGATAATAATACACAATTCCCATCCAAGATAAGTTAGATCTTCAAAGCACATAGGACTAGTTTTCATGTACAAGTAGGTACTCATGGGTTCTAGAAAAGTGATTTCTAGTCCCCAGCTACAACCGAATTGCGGATGATCTCTGCTTCTTCATAAAGAAAGTAAAAGCATCTGAATGTACCTATATAGGAAGAGTAAATACATACGAATACGATGTGTGTTCCCATGCATAATACCCTTAAGAACTAGGAGTTTGGGATTCTTTGCAAAACAGAAAGTCATGTGGTTCTTGTAGGGTTCAACTTTCCTGAGTTCTCCATCAGCTTTAGAACGATAGTCTTGCATTGCTATGTACTTCAAGTTCATCATAATAAAAATGTACCAGAGATGTGATGCAAAAAAAAAAAAAAAAAA | |||||||||