| mature miRNA: CCAAGGATATTGGGTCTAGC species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73869891|gb|DT472629.1|DT472629 WS01226.BR_O14 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01226_O14 5', mRNA sequence CCAAGGATATTGGGTCTAGC EST sequence (targeted fragment marked with yellow): GACCAAGTTTTTCTTATTTAGCTCCTCCTCCTCCTCACTTCTTCACCGCAGACCCTTTCATTTACTGTCTTTGATCTGAAATCTTTCTTTGATCAAGTCTCTCCAAGCTATAGATATGAAGAAAGCTGTGTTGAAATTGGATTTGCATGACGAGAAAGCCAAGACAAAAGCCATGAAGAAAGTCTCTAGTCTTTCAGGGGTGGATTCAATATCCATGGACATGAAGGACAAGAAGTTGACAGTGATTGGGGACGTTGATCCAGTAGACATAGTGAGCAAACTGAGAAAGCTATGTAACACAGAAATAATTACAGTAGGACCAGCAAAAGAGCCAGAGAAGAAGAAGGAAGAACCCAAGAAAGAAGAGCCAAAGAAGCAACAAGATCCGAAGAAGAAAGAACAAGATGCTGTGGACGAGCTGGTCAAGGCTTACAAGGCCTATAATCCTCATATGACTACATATTATCATGTTAGAAGTGTTGAGGATGATCCAAATGCCTGTGTAATTTCTTAATTAGATGTTAATTAATAAATATTAATAAGAGATGAAATAGGTGAAAAATAAATTTTTATATATATGTTGTGATTTTGGAAAATTTGGGTGTTATATATTAATTATTAGAAATAGACTACAGCACAAGTTGGTAGTGGGGTTGCTTTATATTTAATGAATTGTGGGTCTTATTTTGGAATTACTAAAAAAAAAAAAAAAA | |||||||||
gi|52382815|gb|CV229885.1|CV229885 WS01914.B21_M01 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01914_M01 3', mRNA sequence CCAAGGATATTGGGTCTAGC EST sequence (targeted fragment marked with yellow): GTTTGCCTCCTCCTGTCTGAGTTCTTGACCTCAGACTTTCTTTGGTTGCTGTCTTTCATCTTCAATCTTCTCTGATCAGATCCCTCAAAGCTATAAAAATGATGAAAGCCGTGTTGAAATTGGATTTACACGAAGACAAGGACAAGAAAAAGGCTATGCGGAGAGTCTCTGGTCTTCCAGGGGTGGATTCAATATCCATGGACATGAAGGACAAGAAATTGACGGTGGTTGGGGACATCGATGCAGTTTGCATAGTGGGCAAGTTGAGAAAGATTTGCCACACAGACATAATCTCAGTAGGACCAGCAAAAGAGCCTGAAAAGAAGAAAGAAGAGCCCAAGAAGGCAGAGCCGAAGAAGCCAGAAGACGATAAGAAAGATAAAGATGCTGTGGCTGAGTTGGTGAAGGCTTATCAGGCCTATAATCCTTATTTGACCACGCATTATCACGTCAGAAGTGTCGAGGAGGATCCTAATGCTTGTGTCATTTCTTAATTTTTTTTTTATTAGATGCTTAAACAAATCACTTCTTAAAGCATAATACACAATTTCATTAAGCTTCATTTAGTATGTTTGTTTGTTTGTTTCTGAAATATATATATATATATATATTAAATCCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|52496124|gb|CV243149.1|CV243149 WS02518.B21_A14 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02518_A14 3', mRNA sequence CCAAGGATATTGGGTCTAGC EST sequence (targeted fragment marked with yellow): GCTTGCCTCCTCCTGTCTGAGTTCTTGACCTCAGACTTTCTTTAGTTGCTGTCTTTCATCTTCAATCTTCTCTGATCAGATCCCTCAAAGCTATAAAAATGATGAAAGCTGTGTTGAAATTGGATTTACACGATGACAAAGACAAGAAAAAGGCTATGCGGAGAGTCTCTGGTCTTCCAGGGGTGGATTCAATATCCATGGACATGAAGGACAGGAAATTGACGGTGATTGGGGACATCGATGCAGTTTGCATAGTGGGCAAGTTGAGAAAGATTTGCCACACAGACATAATCTCAGTAGGTCCAGCAAAAGAGCCTGAAAAGAAGAAAGAAGAGCCGAAGAAGGTAGAGCCGAAGAAGCCAGAAGACGATAAGAAAGATAAAGATGCTGTGGCTGCGTGGGTGAAGGCTTATCAGGCCTATAATCCTTATTTGACCACGCATTATAACGTTAGAAGTGTCGAGGAGGATCCTAATGCTTGTGTCATTTCTTAATTTTTTTGATTATATGCTTAAACAAATCACTTCTGAAAGCATAATACACAATTTCATTAAGCTTCATTCAGTATGTTTGTTTGTTTGTCTTTGAAATATATATATTAAATCCCATATAAAAAAAAAAAAAAAAAA | |||||||||
gi|52499702|gb|CV246727.1|CV246727 WS01111.B21_L16 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01111_L16 3', mRNA sequence CCAAGGATATTGGGTCTAGC EST sequence (targeted fragment marked with yellow): CAGAGGCAGGATAAACTTGCTTTGTGGATTAAAGCTGCTGCCAATGAGGCTGCCCAGATGACCATTGGCAGGAAGTGGAAGGAGATCATTGCCGTCAATGACAAGATCCCCTCCAGTTTCCATGATGATTCCAAAAGGGAAAGAAATGCCAAAAGCCGATCCAATGTGTAAGCCCTCCATGACTTTCGTGCGATGTGCAGTGTGGTTTTGTTAGCATGTTTCCCCCCCAAGAAGTGAAATGTATTTTTGATATGCCAAATCCTTAATGGAGGGTATCAGGAGGATGCTCCTTTAATTTTGGTGTTGGACAAGATTGAGCTTGTGAGAGTATTGTATTATCCCCTTCCCAGCAATTTGTACTGTTGAGAGATATTGTTGTGCCCAATATCCATGGCAGAAGAAACCCCCCTTTTCCAGTTCCATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAA | |||||||||
gi|52497222|gb|CV244247.1|CV244247 WS0254.B21_C06 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0254_C06 3', mRNA sequence CCAAGGATATTGGGTCTAGC EST sequence (targeted fragment marked with yellow): GCGGAGCTTTCCCTTTCCGCCCATACAGTGTGTTCATTGACCATAGACTTCTGGTCCTGACGTGTGAGGTTGCCGCCACAGTTTTCTCTCCTTCACTATAAAATCTCGGCCAATGCCTCTTCAACTCAACAAGTCTATAATCTTTGCCTCCTCCTGTCTGAGTTCTTGACCTCAGACTTTCTTTAGTTGCTGTCTTTCATCTTCAATCTTCTCTGATCAGATCCCTCAAAGCTATAAAAATGATGAAAGCTGTGTTGAAATTGGATTTACACGATGACAAAGACAAGAAAAAGGCTATGCGGAGAGTCTCTGGTCTTCCAGGGGTGGATTCAATATCCATGGACATGAAGGACAAGAAATTGACGGTGATTGGGGACATCGATGCAGTTTGCATAGTGGGCAAGTTGAGAAAGATTTGCCACACAGACATAATCTCAGTAGGTCCAGCAAAAGAGCCTGAAAAGAAGAAAGAAGATCCGAAGAAGCCAGGAGACGATAAGAAAGATAAAGATGCTGTGGCTGAGTTGGTGAAGGCCTATCAGGCCTATAATCCTTATGTGACCACGCATTATCACGTTAGAAGTGTCGAGGAGGATCCTAATGCTTGTGTCATTTCTTAATTTTTTTGATTAGATGCTTAAACAAATCACTTCTGAAAGCATAATACGCAATTTCATTAAACTTCATTTAGTATGTTTGTTTGTTTGTTTGTTTTTGAAATATATATATTAAATCCCATATAAGATCTAAAAAAAAAAAAAAAAAA | |||||||||