| mature miRNA: CCATAGCCACAGCATGCCAT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|52503130|gb|CV250155.1|CV250155 WS01126.B21_J10 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01126_J10 3', mRNA sequence CCATAGCCACAGCATGCCAT EST sequence (targeted fragment marked with yellow): CGAATTGGTGGCCAAAGGTAAGAGATTTGATAGATACGTACCAGCAGAAGACTATTTTCAGAAGGGTCTATACATGTTTGATATAGGCCAGAATGATCTTGCCGGTGCATTTTACTCAAAAACACTTGATCAAATTGTTGCTTCAATCCCAAACATTTTGGTCGAATTCGAAACCGGGATCAAGAAACTATATGACCAAGGAGGTAGGAATTTTTGGATCCACAACACGGGTCCTCTTGGTTGCTTGACTCAGAACGTTGCAAAGTTCGGAACTGATCCATCAAAGCTTGATGAGCTAGGATGTGTAAGTGGGCATAATCAAGCAGCTAAGCTTTTAAATCTTCAGCTTCATGCTCTCACTAAAAAGCTGCAAGGCCAATATGCTGATTCAAATATCACATATGTTGATATCTACACAATAAAATCCAACCTCATTGCTAATTATTCCCGATACGGGTTTGAGCAACCCATAATGGCATGCTGTGGATATGGAGGACCACCACTAAACTATGACAGCAGGATTTCTTGTGGGCAAACAAAAGTTTTGAATGGGACCAGTGTCACAGCCAAAGCATGCAGTGATAGTACTGAGTATGTGAATTGGGATGGAATTCATTATTCAGAGGCAGCAAATCAGTATATTTCATCACAAATACTCACCGGAAAATTTTCGGATCCGCCATTCTCTGATAGAATGCCTTTCCTTCTCAATCTCAAGTTCTGAGGAGCTAATTTGCTAGCTG | |||||||||
gi|73875579|gb|DT478317.1|DT478317 WS02522.BR_H05 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02522_H05 5', mRNA sequence CCATAGCCACAGCATGCCAT EST sequence (targeted fragment marked with yellow): GCAGAATTCTCTTCCTCTCACTCTCTTCTCCAGCCGGTGGTAGCAGCGGCAGAAGCAGCATCTCCAACAGCCTGTCCTACCTAGTTCCAGCAGCTTCTAGCTAGGAAGTAATAGGAGCTAAAGATTTCAGTTCTCAAACAGAGATGGGTTCTTCAAGCAAAGACCTTTTGCATTTGGAGAACAAGTATTTCGTAACACCATCATCCCTTGAGTCTATACTTCGTGTATGTGAGAAAGATTCTGGACCCAGGAAGCCCCCAGCTGATGGAAAGCCCTTAACCACTCCAGTTCCTCAAAGTCAAGTTCTAGGAAAAGTGAGAGATTTCATAGGAGTCATATCAGAAGCCAATAAGCGGTTGCAGGAAGATGCAAAGGATAATTCTGAGAAATATGACATTGAAACGCTAACTGGAAATGAATCAGAAGTCGTTGAGATGGATTTGATGCTGGGTATAGCTGATCTTCATACTCCTGAAGCTGTAGCTGCTGCTGAATCTGCAATAGGTAATGGTCATCCATTGAATTCTTTGGCTGCTAGCAGTAGTGAATCAGAATCAGAAGACACAAGTGATGAAAGCGAAAGCGATGATGAGGCCAGTGATGACACTGAAAGTGATGGTGAAGACAATGGCAATGATAATAATAATAAAACATGCAAGTCTGGCAACAATGATTCAACTGAAGGTATTGTAAAACAATGCTCAGAAAGGCAACGAAAAATTGTTGAACTGTCTTGAAGGCTGAAGCATGTTCTGCTGTGGTTGTGGAAAGTCCTTATATTTGTAGTTTGGGCTTCTATGAGGACACGACCTCAAGACGCTGGGGAAGGGGAA | |||||||||
gi|52376362|gb|CV226692.1|CV226692 WS0165.B21_A03 PT-DX-A-7 Populus trichocarpa cDNA clone WS0165_A03 3', mRNA sequence CCATAGCCACAGCATGCCAT EST sequence (targeted fragment marked with yellow): AAGCAGATTAGGGTGTGCGCTTGTTTTTACTACTAGAGTTTCCATGACTATTGTTAAAAAACACTTCCTTTCACCCAAAAAAATCAGATGCATATCATAAAAAAATGTCTACATGCATGAAATACGTCTGGCCTGCTTTAGCAGGATTATACTAATTTAATGGGTTTTGATGCAGCTATCTTATTCTGACATATCAAACTACCTATGAACTCGTAAGACGTAGACGCATTCCATATCTAAGGTTTGCTAGCAGTCCTGTAATCTTCTTTTATTTTACATCATTCATTTAGAGTTGGATTTCTGTTTAATGACCGATGAAATCTATCGAAATCAAACCATATGCTGGGTTCATTCATGGGCAATCACTGTTGCATTAGTTGGTGCCAGCGTTCAATTGGATGTTGTTGCTATGGGCACCATATTTTACTAGCAAAAGCAAATATGATTTGACCATTATTTATATTCTGATTTCTTTGTCCTCTAACTTTCATTGATCTGCAGAGGAATTCCTGAACGAGTGTATCCATTCAGTAAAGGAGTTTGCAGAAATTTATATGACTTTTGTTTTGCTCGAAGCAGCATATATAGTTTGGAAAGATTACCCACAGCAATGGAACTTGAAGAAAAGTCAAGGCCTTACACATGCTTAGATTTTTTGACCGGCCGTTGTTGCTGAGGTTGCAAGGGCATATTGTAACATTAATGACAACAACTTCTATCCCCAAATTTGTTCTCTGATATCCATGTGAATGTGTGCCTGTGCATCCAGTTGTTTTAGCTACAGGATATGGCAGTGCAGATGGTTAAGTTGGAGCTTGTTGTGGGCTTTTAGATTTTTGTAGTCAGTAGAAACTGGTTCTGTTGTTTTTTCTGCCTGGAAAATTTCATAATGTTTTGTGTACGGATTTTTCATGCCCAGATGAAATCTAAGATTTATCTTTTTGCGAATCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|3858048|gb|AI166764.1|AI166764 xylem.est.564 Poplar xylem Lambda ZAPII library Populus trichocarpa cDNA 5', mRNA sequence CCATAGCCACAGCATGCCAT EST sequence (targeted fragment marked with yellow): AATGATCTAGCTGGTGCATTTTATTCAAAAACATTTGATCAAATTGTTGCTTCAATCCCAAACATTTTGGTCGAATTCGAAACCGGAATCAAGAAACTATATGACCAAGGAGCTAGGAATTTTTGGATCCACAACACAGGTCCTCTTGGATGCTTGACTCAAAATGTTGCGAAATTCGGAACTGATCCATCAAAGCTTGATGGACTAGGATGTGTAAGTGGGCATAATCAAGCAGCTAAACTTTTCAATCTTCAGCTTCATGCTCTCACAAAAAAGCTACAAGACCAACATTCTGATTCAAATATCACATATGTTGATATCTACACAATAAAATCCAACCTCATTGCTAATTATTCTCGATACGGATTTGAGCAACCCATAATGGCATGCTGTGGCTATGGAGGACCACCTCTGAACTATG | |||||||||
gi|60694411|gb|DN485027.1|DN485027 M101C04.3pR Populus female catkins cDNA library Populus trichocarpa cDNA clone M101C04 3', mR CCATAGCCACAGCATGCCAT EST sequence (targeted fragment marked with yellow): ACCAAATGAAGGAATTCAAGGCTAAGGTTCATGAATTCCACTCCGCTGGTAAACAAGGATCAACACCTCTCCCATCACGGGACATTTTTGGAAAATCTCTCTACACGTTTTATATTGGTCAGAATGATTTTACTTCAAATTTAGCTGCTATTGGTATAGGTGGAGTGAAGCAATATCTCCCTCAAGTGGCTGCACAAATTGCCGGTAGTATCAAGGAGCTATACGCATTGGGAGGGCGTGCATTTCTGGTTCTCAATCTTGCACCGATAGGTTGTTATCCTGCGTTCTTGGTACAGCTTCATCATAACACCTCGGACATCGACGCCTTCGGTTGTTTGATCTCTTACAATAACGCTGTGGTGGACTATAATAACATGTTGAAAAAGGCTCTAAGCCAAACTAGAATGGAACTCCCAAAAGCTTCCCTTATATATGTGGACATCCATGCTATTCTACTGGAGCTCTTCCAGCATCCCGGTTCTCATGGGCTCAAATATGGTACCAAAGCATGCTGTGGCCATGGGGGAGGCCAGTACAATTTTGATCCTAAAGCTTACTGTGGAAATACCAGAGTGATTAATGGAAGCACTGTAACCGCATCAGCTTGTGGTGATCCATACAAGTACGTTAGCTGGGATGGAATACATGCCACAGAAGCAGCAAACAAGCTTGCTACAATAGCTATTCTGAAAGGGTCCTATTTTGATCCTCCTTTTCCTCTTCATCATCTCTGTGACCTCCAACCCATTAATTGATGTTTTCTCTTTATTTTAGGAGCTAATA | |||||||||
gi|60701370|gb|DN491240.1|DN491240 UM77TC12.3pR Populus female catkins cDNA library Populus trichocarpa cDNA clone UM77TC12 3', CCATAGCCACAGCATGCCAT EST sequence (targeted fragment marked with yellow): TTCAGCAGAGAAGGACAGTGCTGGCTGTTCAAAAGCAGCACAATGAAGTGGCTCGGTATTTTAATTACAAATTGAAGGAGGCTGTTTTTAAATTGAGGAAAGATTTTCCTTCAGCTGCATTCACATACGTGGACGTGTATTCTGTGAAATATTCTTTATTCAGTGATCCCAAGAAATATGGATTTGAGCTTCCACTTATAACCTGCTGTGGCTATGGAGGCAAGTACAACTACAGTGATGCTGCAGGATGTGGAGAAACAATTACAGTAAATAATACCAAAATGGTTGTCGGTTCATGTGACAACCCCTCTGTTCGAGTAAATTGGGACGGAGCCCACTATACCGAGGCTGCTAACAAGTTTGTTTTCGATCGAATTTCGACAGGAGCCTTTTATGATCCGCCAATCCCCTTAAACATGGCATGCCACAGGAATGTATCATTTTCTGTGCTTTCAATATCATTCTAAAATGTATAAATCGCAATAAAATGCCTCCCTCTCGATCCATTC | |||||||||
gi|24065544|gb|BU874020.1|BU874020 Q063D10 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence CCATAGCCACAGCATGCCAT EST sequence (targeted fragment marked with yellow): GGAAATATGTTGGAGTTTCGTGCTGGTAAAATGTATTTTGATGGAAAAAAGTTGTTCCTGATTTGCGAAAAGGACTAGTTCGCGTTGGAAGGGGTGAGGAGGGTTTGCTTCATTTTCAGTGGCTTGATAGGAATTTGAATGCTGTGGCTGTGGAAGATGATCAGATTATTTTTCCTGAAGAGGCTGTTTTTGAGAAGGTTAATCAAGTTTCGGGAAGAGTTTACATCTTGAAATTCAATACAGATGACCGGAAGTTTTTTTTTTGGATGCAGGAGCCAAAAGCTGAAGAGGACTCACAATTATGTAGTTCTGTCAACTATTATATCAATCTTCCATTAGAGTTCCTTGATGAAGAAGAGCCTGATGCTGCTGCTCCTTTGCAAGTTTCTGAAGACATGCTTGAAGATAATGTCTCATCAAGGGCTGGAGACTTAGTTGTCCCGAACCTTGGTGCAGAAGCAATTAGTGATGTAACCTCTTCATCANGACCAGTGAAAATGGAAGACTTGCAGAGAATCCTGAGTAATATTGGTGCTAGA | |||||||||
gi|3857737|gb|AI166452.1|AI166452 xylem.est.283 Poplar xylem Lambda ZAPII library Populus trichocarpa cDNA 5', mRNA sequence CCATAGCCACAGCATGCCAT EST sequence (targeted fragment marked with yellow): CCAGAATGATCTAGCTGGTGCATTTTATTCAAAAACATTTGATCAAATTGTTGCTTCAATCCCAAACATTTTGGTCGAATTCGAAACCGGAATCAAGAAACTATATGACCAAGGAGCTAGGAATTTTTGGATCCACAACACAGGTCCTCTTGGATGCTTGACTCAGAATGTTGCGAAATTCGGAACTGATCCATCAAAGCTTGATGGACTAGGATGTGTAAGTGGGCATAATCAAGCAGCTAAACTTTTCAATCTTCAGCTTCATGCTCTCACAAAAAAGCTACAAGACCAACATTCTGATTCAAATATCACATATGTTGATATCTACACAATAAAATCCAACCTCATTGCTAATTATTCTCGATACCGGATTTGAGCAACCCATAATGGCATGCTGTGGCTATGGAGGACCACCTCTGAACTATGACAGAAGGATTGTCTGTGGGCAAACAAAAAGTTTTGGATGGGAACCAGTGCCACAGCCCAAGCATGCAATGATAGCACCCGAG | |||||||||
gi|73867136|gb|DT469874.1|DT469874 WS01919.C21_C17 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01919_C17 3', mRNA sequence CCATAGCCACAGCATGCCAT EST sequence (targeted fragment marked with yellow): GACTGATCCATCAAAGCTTGATGAACTAGGATGTGTAAGTGGGCATAATCAAGCAGCTAAACTTTTCAATCTTCAGCTTCATGCTCTCACAAAAAAGCTACAAGACCAACATTCTGATTCAAATATCACATATGTTGATATCTACACAATAAAATCCAACCTCATTGCTAATTATTCTCGATACGGATTTGAGCAACCCATAATGGCATGCTGTGGCTATGGAGGACCACCTCTGAACTATGACAGAAGGATTGTCTGTGGGCAAACAAAAGTTTTGGATGGAACCAGTGCCACAGCCCAAGCATGCAATGATAGCACTGAGTATGTGAATTGGGATGGAATTCACTATTCAGAGGCAGCAAATCAGTATATTTCATCACAAATACTCACTGGAAAATTTTCGGATCCGCCTTTCGCTGATAAAATGCCTTTCCTTCTCAATCTCCAGTTCTGAGGAGCTAATTTGCTTACTATTCTGTAATTATTCTATTAGTTCTTTTTTCATCGTGCTAAGAATATTAAAAATTTCTGACTAAAAAAAAAAAAAAAAAA | |||||||||