| mature miRNA: CCTGAACCCATCAGAGTTGGG species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|24060899|gb|BU869802.1|BU869802 Q004G03 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence CCTGAACCCATCAGAGTTGGG EST sequence (targeted fragment marked with yellow): ACCCGCACATCTATTAACTTAAACCAACACCTCCCATCCTCCCTCCCTCTGATGGGTTCTGGACCGTTAATAATACCCTAATCTCTCTCCAAAATTCCTCTTGATTCTCTTTCTGGGTCTCAATTTTTTCTTAAAAACTCAATCTTTCTTGCAATTCCCCTTTTTTCTCATCCGGGTTTCTCTTAGATTTCTCAAAATGGGTAAAAATCAAGCTTACAAAGCTATGCAAAGATCCAGGCTTGGCTCCAGCTCCGGCGGTCCTGAAGAGATTGAAGATGGCATGGTGGATGGTTCTTTTCATTCACCACAGTGGCATGCTGCTCGTTTGGCCAGCCTTAATACAACTCACACAGTAACCTGGGAAGAGTTCAAGAAAAAGCAAAAGGAGGATGAAATGAGAAAGGGGGAACTAGAAGCAGATAAGGATAGAATGATGAGGGAGTACCGAGCTCAATTGGATGCTGAGAGGGCACGCAAACTTGCTCATGGCCGGAATCACTCTGGTAGCAAATCTAGTCATCGAAAGGATAGAAAGGACAGAGATTCAAAGAAACGCAGCAGTAAAAAAAGAAAGCATTCGAGGCGGAGATCTGATGATTCTAGCTCCTCCAGTTCATCCTCGGATTCTTCAAGTAGTGAAGATGAGAGGGAATCAAAAAGATCAAAGTCAAGGTCTAGAA | |||||||||
gi|73885433|gb|DT488171.1|DT488171 WS02535.B21_L06 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02535_L06 3', mRNA sequence CCTGAACCCATCAGAGTTGGG EST sequence (targeted fragment marked with yellow): AAAGGAGGAGGTGGATTCACGATCCATTTATGTTGGTAATGTGGATTATTCTTGTACCCCTGAAGAAGTGCAGCAGCATTTTCAATCCTGTGGAACTGTGAACAGAGTGACAATTTTGACTGACAAGTTTGGTCAACCAAAGGGGTTTGCTTATGTTGAGTTTATAGAGGTTGATGCTGTTCAGAATGCTGTCTTATTAAATGAATCTGAACTTCATGGCCGCCAGTTAAAGGTCTCCGCTAAGCGAACTAATGTTCCTGGAATGAAGCAATATCGAGGAAGGCGCCCAAGCCCTTATGGGTTCAGGTCCCAGAGGGCATTCATGCCTGCTCCTTTCTATCCTGCATATGGTTATGGAAGAGTTCCAAGGTTCAGGAGACCTATGCGGTACAGGCCATACTAGGGAACATGTATTCTGTTAGTAGTGGCCAAGTAATGTGAAGACAGTTGGTGACGACCATATCAGTATTGTGGTTACTTGAGGAACAGAAAGACTAGTGTATCATCATTTGCATGGCAAAGGCTGGCCAGATTTTTTTCAATCAATAGCTTGCAAGAGTTCTGGATTCATGTTCACTGAATCCTACATTTACTTGCCTTTGATGGACAAAGGGTGCTAACCGCGCAAAATGTTATGGAAATGATTTTCATGTACTTGTGACTCCATTTACGGTTTGAGTTTTTCGGTGAGGTTGAGTTGAAACACTGGAGGATTCATAACTGACATTTATGCTTTTATACTTTATAACTCAAGTCGTTTGTTTTTCAATTTATAGATGCCACGTTTTCCCCAGTTTTCCCATTAATGATCAGGGCAATTTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA | |||||||||