| mature miRNA: CCTGCACCTGCACCTGCACCT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|18018542|gb|BI137594.1|BI137594 F089P08Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence CCTGCACCTGCACCTGCACCT EST sequence (targeted fragment marked with yellow): CTCATTGTATATAGTACTACTAGTTATAGAGAGTGAGTGACAACTAGTAGCTAGCAGTTGTTTGATATAATATGATAAACAGGCTGCAGGTCATACAGGCAATATTATGCATGCCAATATGTTGCCTTTATCTGCATTTGCACCTGCATCTTATTGCGTTTGTTTTGTTTTTGACTCCACAAACAAAATCAAGTTCTGTCGATACAGTATGTGGGACAATTAGATATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGTAAATGCCATTTTGGTAATGTTATCACTCCCATATATACACAGCAGTGCTGCCTCTTTTCTTTTCATCTGTCTGTGGTTAATTTGCAGGTTTCATGGTGGCAGAAATATTGTACTGGTAATCATCAAGGGAGAAAGGGCAAGAAA | |||||||||
gi|73886656|gb|DT489394.1|DT489394 WS02542.B21_B17 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02542_B17 3', mRNA sequence CCTGCACCTGCACCTGCACCT EST sequence (targeted fragment marked with yellow): CCACCCCCCTCCCTCTCTCGCTCTATAAATCTTTCCTGGCACTCGGGAAATTTGTCAGAGCCCGGAGGATGAAAGATCAGAGAGGCCAAGCATCGATCGACTAGTTGTTTGGCGTTGAGTAATATTATAAACAGACCAGCATGCCAACATGTTGCCTTTATCTGCATTTGCACCTGCACCTTACTTGTTTCTTTCTTTTGTTTTTGACTCCAAAACCAAAAGTAAGTTTGAAACATTAAAACAAGCTTGAGGTGCAGGTGCAGGTGCAGGTGAATGCCATGTTGGTGTTTTGACACTTGTCGTACTGCCTCTTTACTTTCCTTAATTTGGTCCCTGTGTGGTAACTCGCAGCTTCAAGCTGTCACAAATGTACGGGCTTTTTTATATCTTCAAGGGAAGGGTTAGAGAACTCTTGTGCTATAATCCAAGAGAACAAATGGGTTTTTCAACAGCGACCGAGTCTGACCATTAACTTCTTTATGTAGGTGGCTGGTGTTTATAGAGGTGATGATGATGAAGACATCGTGCAGCCACAAATCCATGGTTGCGGAAGACTATTTTAAGGGTTTTTTGGGAGATCTTTGGTGTACATGAAGGACGGATCCATGAATATGCAAGCTGGTGCCTATCCTAGATATATAGTTCTCGATCTTCCACTTGGGCGCTAGGGTTTTCAAGGTAATATATAGAAATTACATTCAACTAAAAAAAAAAAAAAAAAA | |||||||||
gi|18016482|gb|BI135554.1|BI135554 F054P61Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence CCTGCACCTGCACCTGCACCT EST sequence (targeted fragment marked with yellow): CTCATTGTATATAATACTACTAGTTATAGAGAGTGAGTGACAACTAGTAGCTAGCAGTTGTTTGATATAATATGATAAACAGGCTGCAGGTCATACAGGCAATATTATGCATGCCAATATGTTGCCTTTATCTGCATTTGCACCTGCATCTTATTGCGTTTGGTTTGGTATTGAATCCAAAAAACAAATCCAAGTTCCGTGCCGATCCAGAATGTGGGACAATTAGATATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGTGAATGCCATTTGGGTAATGTTTTCACTCCCATATATACACAGCAGTGCTGCCTCTTTTCTTTTCATCTGTCTGTGGTTAATTTGCAGTTTCATGGTGGCAGAAATATTGTACTGGTAATCATCAAGGAGAAAGGGCAAGAAATTCTTGTGCTTATTAATTAA | |||||||||
gi|73889107|gb|DT491845.1|DT491845 WS02548.C21_P13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02548_P13 3', mRNA sequence CCTGCACCTGCACCTGCACCT EST sequence (targeted fragment marked with yellow): CAGGCAATATTATGCATGCCAATATGTTGCCTTTATCTGCATTTGCACCTGCATCTTTTGCGTTTGTTTTGTTTTTGACTCCACAAACAAAATCAAGTTCTGTCGATACAGTATGTGGGACAATTAGATATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGTGAATGCCATTTTGGTAATGTTTTCACTCACATATATACACAGCAGTGCTGCCTCTTTTCTTTTCATCTGTCTGTGGTTAATTTGCAGTTTCATGGTGGCAGAAATATTGTACTGGTAATCATCAAGGAGAAAGGGCAAGAAATTCTTGTGCTTATTAATTAACTATGAGAGCAAATTAATGTGTTCAACAACGACAGGCCATGTATAAAATTCTTTATGCAGGTGCTTGGTGTTTATAGAGGTGATGATGAATTGAAGTGATTGTGCAGCCACAATTCAATGGAAAAAAAAGAATATTTCAAGGGTTTTCCAGTAATCTTTGAATTAAGTACTTGGAGGACAGATCATCCATGATCAATACGCAAGGCGCCTGTGCTAGATATGTAGATCTCTTGATCTTCCATTTGAAGCTAGGGTTTTCAAGCTAATATATATAGAAAGTACATTCCCTCTCTGCATCCCTCCCTCCCTCCCTCTCTCTCACTGTCTCCCTCTCTCTCTCACACAGGCAGTACCATTGCCAAATAGGAGGAACATCCATTCTAAGTTCTAATGTTGACATTGGTTGTTCTACAGTTAAAAGTCTCCATGATTGGAAGAAAAGTCGAGCACAAATATTAAGGATTTAAAAAAAAAAAAAAAAAA | |||||||||
gi|24066126|gb|BU874602.1|BU874602 Q069H02 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence CCTGCACCTGCACCTGCACCT EST sequence (targeted fragment marked with yellow): GCCGGGGGAGAGAGTTGTGTTTTTGAAATCGTACCTCCAGTCCTCCACTCGACTACGGTTTCGGTGTTGGTTGTGGCTTTGGCGTAGGCTGGGGTTTTGGGGGCATGCCTGTGAATATTTTGGGTCTTGGTGCAGGTGCAGGCTGTGGGGTTGGTCTAGGCCTTGGATGGGGCTTTGGCACTGCCTTTGGGAGCCAGTATAGGTCGTCTACTGTCACATTCCAGGGCATGGAATTGGCCAAAAAAAGAAGAAAGTGATGACAATCAGTCTTGAGTATTTGTTATGAAGCAAAGTTTATGCATTTCTTGTGTTTTTTTTTCTCCTTTATTTCCTATGAAGTTTCCAATTGTCATGGAACTGTGAAAAAGAAGAAGCAGCTTGCTCTTCAACCTATTTCTATGTTCAAAGTACTGTAGTGTCT | |||||||||
gi|38575717|gb|CK091392.1|CK091392 F095P16.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F095P16 3', mRNA seque CCTGCACCTGCACCTGCACCT EST sequence (targeted fragment marked with yellow): CATTGTATAAATACTACTAGTTATAGAGAGTGAGTGACAACTAGTAGCTAGCAGTTGTTTGATATAATATGATAAACAGGCTGCAGGTCATACAGGCAATATTATGCATGCCAATATGTGCCTTTATCTGCATTTGCACCTGCATCTTATTGCGTTTGTTTTGTTTTTGACTCCACAAACAAAATCAAGTTCTGTCGATACAGTATGTGGGACAATTAGATATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGTGAATGCCATTTTGGTAATGTTTTCACTCCCATATATACACAGCAGTGCTGCCTCTTTTCTTTTCATCTGTCTGTGGTTAATTTGCAGTTTCATGGTGGCAGAAATATTGTACTGGTAATCATCAAGGAGAAAGGGCAAGAAATTCTTGTGCTTATTAATTAACTATGAGAGCAAATTAATGTGTTCAACAACGACAGGCCATGTATAAAATTCTTTATGCAGGTGCTTGGTGTTTATAGAGGTGATGATGAATTGAAGTGATTGTGCAGCCACAATTCAATGGATGTGGAAGAATATTTCAAGGGTTTTCCAGTAATCTTTGAATTAAGTACTTGGAGGACAGATCATCCATGATCAATACGCAAGGCGCCTGTGCTAGATATGTAGATCTCTTGATCTTCCATTTGAAGCTAGGGTTTTCAAGCTAATATATATAGAAAGTACATTCCCTCTCTGCATCCCTCCCTCCCTCCCTCTCTCTCACTGTCTCCCTCTCTCTCTCACACAGGCAGTACCATTGCCAAATAGGAGGAACATCCATTCTAAGTTCTAATGTTGACATTGGTTGTTCTACAGTTAAAAATCTCCATGATGGAAG | |||||||||
gi|73888903|gb|DT491641.1|DT491641 WS02548.C21_F13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02548_F13 3', mRNA sequence CCTGCACCTGCACCTGCACCT EST sequence (targeted fragment marked with yellow): TTTTTTTCCAGGGCAGTATATATAAATAAATACTTTGCTTGGACAGTGAAATTGTTGAGAAATTCGTAGAACCTAAGGAATGAAGAATCTAACAATCATCGCTTTGCCATTCTCTTAAGGTGGTAAGGGTATTTTTAGTGTAGTCTTCACATTAGCTGGTCTTTCTGGAGAGAAAACAACAAACTGTCCTTCTACAGCGTTGATTGTCTGGTAGATGTGGGTGATGCATGGATCCGTTTGGCTAAGTGTGGTTGGACTTCAATTCTTGTTCAACCCAACTAGTCTCGGTACTTCAATCTTGCTATTCATGGCTGGGGCATAATTTCAATGAATTGATCTAGTGTTGCCTTTACCTTCTACCACAGCCGACAGAAAACAGCTGATTGTGTTCTCATGTTTTGCAAAATATGAGCTACATCCAATAACTGTTGTAAATGATATCCGATCGTCAAGAACATCTTTGTGATATTTAGAATTTTGCATGACGATCCCATGATCCTTGATATAAAACTTGTCTGGTTGATGTGTGTGGTAGAATAGTCACCTCATCTGACTTCCTGTTTGAGACTCTGCGTAAATCTTCCCTTTGAGTGTGAACTGAGCTACCAATTTGCTTACGTATATGTTTGTCTGGTGCAGGCATGCCTGTGAATATTTTGGGTCTTGGTGCAGGTGCAGGCTGTGGGGTTGGTCTAGGCCTTGGATGGGGCTTTGGCACTGCCTTTGTAAAAGGGTATAGGTCATCTACTGTCACATTCCAGGGCATTAAAGGGCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|38585866|gb|CK101541.1|CK101541 F095P16.5pR Populus flower cDNA library Populus trichocarpa cDNA clone F095P16 5', mRNA seque CCTGCACCTGCACCTGCACCT EST sequence (targeted fragment marked with yellow): CTCATTGTATATAATACTACTAGTTATAGAGAGTGAGTGACAACTAGTAGCTAGCAGTTGTTTGATATAATATGATAAACAGGCTGCAGGTCATACAGGCAATATTATGCATGCCAATATGTTGCCTTATCTGCATTTGCACCTGCATCTTATGCGTTGGTTTCGTTTTTGACTCCACAAACAAAATCAAGTTCTGTCGATACAGTATGTGGGACAATGGACATATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGTGAATGCCATGTTGGTAATGTTTTCACTCCCATATAT | |||||||||
gi|52375781|gb|CV226413.1|CV226413 WS0164.B21_D05 PT-DX-A-7 Populus trichocarpa cDNA clone WS0164_D05 3', mRNA sequence CCTGCACCTGCACCTGCACCT EST sequence (targeted fragment marked with yellow): CAATTGCAGCACCCAAGTTCACACCACCAACGAAAGTACTAGACAAAGAGATTTTGAATAAATCAACGAACTTGTAGAAGTGATGCCAGCTTTCTTTATGACAAGCAGCAATNTGAGGCATTCAGCTTTCGAAGGTTTCCTGTAATAACATATAGAGAATTCCCTCTCTCTTTTTTTTCACTCCTTTTCAGGCAACAAGTTTTTCTGTCAACTACGAGGACCAAATCCAGGACAAGCTGTCCCAATCACATGGTTCCTAGGCTTTTTCTGGTCACAAAGAAAACGATATTGCAACAACAGTACCAACTGTAAAGAACACCGTATCATGATGCATGACAAAACTTACAGCGCTAGAAATATCCTTCTTAGAAACAGCATCATCAGGGCTCTCTGACTCTGCTTTAAGCTTTGGTGCCGGTGCAGGTGCCGGTGGTGGAGGTTTAGGGGTAAATATATCCAAAGGAAGGAGCACCTTGTCAACCTGATAAATAGCAAGATGGGTGTCCGTGTATACAGTGTCGGAAATGGTGGTGTTGGTAAGTCCTGTAGATATGTTCAAGGAGTTCCCACTGGCGGTAACGTTAAGCTGAAACCTAGCACCAGATCCAGCGTGTGTTTTTAAAGGGCTACTCACGGTATCAAATTGGGAAGATGAGATGAACATAGGGACAATGTGAAACTGCATCAACTCGACCTTTTCTTGATCAGTTAAGGTGCGGAGAGTGCCTGTTTTAAGGGCTGAAAATGCACTATCACTTAGAGCAAAGATGGTCAAGCCATTGTTTGTG | |||||||||
gi|18018510|gb|BI137562.1|BI137562 F088P25Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence CCTGCACCTGCACCTGCACCT EST sequence (targeted fragment marked with yellow): GCAGTTGTTTGATATAATATGATAAACAGGCTGCAGGTCATACAGGCAATATTATGCATGCCAATATGTTGCCTTTATCTGCATTTGCACCTGCATCTTATTGCGTTTGTTTTGTTTTTGACTCCACAAACAAAATCAAGTTCTGTCGATACAGTATGTGGGACAATTAGATATGGAAACTAATAAGCTTAGTAGAGGTGCAGGTGCAAGTGCAGGTGAATGCCATTTTGGTAATGTGTTCACTCCCATATATACACAGCAGTGCTGCCTCTTTTCTTTTCATCTGTCTGTGGTTAATTTGCAGTTTCATGGTGGCAGAAATATTGTACTGGTAATCATCAAGGAGAAAGG | |||||||||
gi|18016871|gb|BI135943.1|BI135943 F060P88Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence CCTGCACCTGCACCTGCACCT EST sequence (targeted fragment marked with yellow): CTCATTGTATATAATACTACTAGTTATAGAGAGTGAGTGACAACTAGTAGCTAGCAGTTGTTTGATATAATATGATAAACAGGCTGCAGGTCATACAGGCAATATTATGCATGCCAATATGTTGCCTTTATCTGCATTTGCACCTGCATCTTATTGCGTTTGTTTTGTTTTTGACTCCGACAAACAAAATCAAGTTCTGTCGATACAGTATGTGGGACAATTAGATATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGGTAAATGCCATTTTGGTAATGTTTTCACTCCCATATATACACAGCAGTGCTGGCCTCTTTTCTTTTCATCTGTCTGTGGTTAATTTGCAGTTTCATGGTGGCAGAAATA | |||||||||
gi|73886656|gb|DT489394.1|DT489394 WS02542.B21_B17 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02542_B17 3', mRNA sequence CCTGCACCTGCACCTGCACCT EST sequence (targeted fragment marked with yellow): CCACCCCCCTCCCTCTCTCGCTCTATAAATCTTTCCTGGCACTCGGGAAATTTGTCAGAGCCCGGAGGATGAAAGATCAGAGAGGCCAAGCATCGATCGACTAGTTGTTTGGCGTTGAGTAATATTATAAACAGACCAGCATGCCAACATGTTGCCTTTATCTGCATTTGCACCTGCACCTTACTTGTTTCTTTCTTTTGTTTTTGACTCCAAAACCAAAAGTAAGTTTGAAACATTAAAACAAGCTTGAGGTGCAGGTGCAGGTGCAGGTGAATGCCATGTTGGTGTTTTGACACTTGTCGTACTGCCTCTTTACTTTCCTTAATTTGGTCCCTGTGTGGTAACTCGCAGCTTCAAGCTGTCACAAATGTACGGGCTTTTTTATATCTTCAAGGGAAGGGTTAGAGAACTCTTGTGCTATAATCCAAGAGAACAAATGGGTTTTTCAACAGCGACCGAGTCTGACCATTAACTTCTTTATGTAGGTGGCTGGTGTTTATAGAGGTGATGATGATGAAGACATCGTGCAGCCACAAATCCATGGTTGCGGAAGACTATTTTAAGGGTTTTTTGGGAGATCTTTGGTGTACATGAAGGACGGATCCATGAATATGCAAGCTGGTGCCTATCCTAGATATATAGTTCTCGATCTTCCACTTGGGCGCTAGGGTTTTCAAGGTAATATATAGAAATTACATTCAACTAAAAAAAAAAAAAAAAAA | |||||||||