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mature miRNA: CTCAATCTCCCCCAAAGGCA
species: Populus trichocarpa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|73879379|gb|DT482117.1|DT482117 WS02533.BR_P08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02533_P08 5', mRNA sequence 

CTCAATCTCCCCCAAAGGCA
 ||||||||||  ||||.||
AAGTTAGAGGGTATTTCTGT

EST sequence (targeted fragment marked with yellow):
GATGATGCTGAGGGTTAGATGGCATGCACGAGTATCATCCTTTTGAGGACTCAACTTGGATCTTAAGGTACATGGGAACGATAACTGGCACAAGTGATCTAGATCCTGTTCGCTGGCCTAATTCACATTGGCGATCTGTCAAGGTTGGTTGGGATGAGTCCACAGCAGGTGAGAGGCAGCCAAGGGTGTCTTTATGGGAGATTGAACCTTTAACCAGTTTTCCCATGTATCCATCACTATTTCCCCTCCGACTGAAACGGCCTTGGCATCCTGGGTCCTCATCTTTGCTTGATAGCAGAGATGAAGCAAGTAATGGCTTAATATGGCTAAGGGGTGGAAGTGGAGAACAAGGTCTTCCATCTCTGAATTTTCAAGCTAATATGCTCCCCTGGATGCAGCAGAGGCTAGATCCAACGATGCTGGGAAATGATCATAATCAGCAGTACCAGGCCATGTTGGCGGCTGGTATGCAAAACCTGGGAGGTGGAGATCCCTTGAGGCAGCAATTTATGCAGCTTCAGCAGCCTTTTCAATACCCCCAACAGTCTAGCAGCCCCAATCCTCTGTTGCAGCTGCAGCAGCAACATCAAGCAATGCAACAATCCATCCCTCATAATATTCTGCAACCACAAAACCAAATTTCTTCGGACAGCTTGCCCCGT


gi|73872338|gb|DT475076.1|DT475076 WS0125.BR_O23 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS0125_O23 5', mRNA sequence 

CTCAATCTCCCCCAAAGGCA
|||||||||||  || |.||
GAGTTAGAGGGTATTACTGT

EST sequence (targeted fragment marked with yellow):
TTGCTGCTGCAACTAATAGCTGTTTTACAGTGTTCTATAACCCAAGGGCTAGTCCATCTGAGTTTGTTATACCTCTATCCAAATACATTAAAGCAGTATTTCACACACGCATTTCAGTTGGAATGCGCTTCCGGATGCTTTTTGAGACTGAAGAATCAAGTGTCCGTAGGTACATGGGTACGATAACTGGCATAAGTGATCTGGATCCTGTTCGCTGGCCTAATTCGCACTGGCGATCTGTCAAGGTTGGCTGGGATGAGTCAACAGCAGGTGAGAGGCAGCCAAGGGTGTCATTATGGGAGATTGAGCCTTTAACAACTTTCCCCATGTATCCATCACTATTTCCCCTCCGACTGAAACGGCCTTGGCATCCTGGGTCACCATCTTTGCTTGACAGCAGAGATGAAGCGAGCAATGGCTTAATGTGGCTAAGGGGTGGAAGTGGAGAACCAGGTCTTCCATCTCTGAATTTTCAAGCTAATATGCTCCCCTGGATGCAGCAGAGGCTAGATCCAACTATGCTGGGAAATGATCATAATCAGCGGTACCAGGCCATGTTAGCAGCTGGTATGCAAAAC


gi|73880147|gb|DT482885.1|DT482885 WS02521.B21_A21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02521_A21 3', mRNA sequence 

CTCAATCTCCCCCAAAGGCA
|||||.||||||| ||.|||
GAGTTGGAGGGGGGTTTCGT

EST sequence (targeted fragment marked with yellow):
AAGGCAAATTGAAGAACATTATAGGCATACCCACCTCTAAAAAAAACCCACCAGCAAGCCGTGTCCCTTGGCATCCCTTTATCCGATCTCGATTCGCATCCCATCGTTGATCTTGCAATCGACGGTGCTGATGAGGTGGACTCGAATCTCAATTTGGTTAAGGGGCGTGGTGGGTCTTTGCTTAGAGAGAAAATGATCGAGAGTGCTTGCAAGAAGTTTATTGTTATTGTTGACGAGTCTAAATTGGTGCCTCATGTTGGTGCTAGTGGTGCCATGCCTGTTGAAGTTGTGCCATTTTGTTGGAAATTTACTCAAGATAAGCTACAAAGTTTGTTTGATTACGCGGGGTGTGTTGCGAAATTGAGGTCTAATAATGGGGGTGAAGATGGTGAGATTTTTGTTACTGATAATGGGAACTATATCGTGGATTTGTTTTTCAAGAAGGATGTCGGGGATTTAAAGATTGCTAGTGATGCTATTCTGAGGCTAGCTGGGGTTGTGGAGCATGGAATGTTTCTTGATATGGCAACTACTGTTATAGTTGCAGGCGAGCTTGGAATCACTATCAAGAATAAGTAGATTGAGATTTAGAAGATGGGTGTTTCACAAATTTGAAATTTTTGATGGGGTACTAATCAAGTTGGAAAATTTGACTGCTTTGTTATTGTAACAGTATTGATAGAAATTGTGCTTTGGGGGGAGGTTGAGGGATCCCTCCGTAATTTTTTGTCAGAATTTTATTAGGAGAGATGGTTTAGGCTTTAGGGTTTTAGGATTACTTTAGCAGTTGAATAATCTAAGCTTATTGAACGTCAGCTGTCATCTCATGTTCTTTTCAATATAAAATTGGCCCTCCTAAACGGGCAAAAAAAAAAAAAAAAA