| mature miRNA: CTGCAACTCCAAGCCCAAGAG species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73887850|gb|DT490588.1|DT490588 WS02545.B21_G02 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02545_G02 3', mRNA sequence CTGCAACTCCAAGCCCAAGAG EST sequence (targeted fragment marked with yellow): ACTCCTTCCCCGATTTTCAGGAATGCTATGGCTGAGTTAGGCAGGCTACTTATATATGAAGCTTCAAGGGACTGGTTGCCTATGGTCACTGGAGAGATTCAGTCACCGATGGGAGTTGCATCTGTTGAATTTATTGATCCAAGAGAGCCTGTGGCAATTATTCCAATCTTGCGAGCTGGTCTTGCTCTTGCAGAACATGCATCATCAATTCTGCCAGCAACCAAAACATACCATCTAGGGATAAGTAGAGATGAAGAGACACTTCAACCAACAATATATCTGAATAAGTTGCCTGACACATTCCCTGAAGGGTCTCGAGTTCTTGTGCTCGATCCTATGCTGGCAACAGGGGGGACGATAGTGGCGTCGCTTGAACTTATTAAGGAGCGTGGGGTTGAAAACCAGCAGATCAAAGTGATATCTGCTGTAGCTGCTCCTCCAGCCCTTCAAAAGCTCAGTGAGAAATTCCCGGGGCTTCATGTTTACACTGGAATCATAGACCCCACTGTTAACGACAAAGGGTTCATAGTTCCTGGACTTGGAGATGCAGGAGATCGCAGCTTCGGAACATGAAGTCCAAGTAGATTTTCATGTATGCCTCTAGCCTGTTCTTAATTGTCTTGGCTTGCAATTTTGATTATTGAGTGTCCACTTATTTCAGGACTTAAAAAGGCTTTCATGAGTTTTTTGCAATGGTTCAGCTCATAGAAAGGGGGGAAATTGAGGAATTTTGTAAAAGAAAAGAAAATTGTATTTTAATTGGCAAAAAGTTTATTTGCTTGCTTAGCATACTGTGAAGCCACCAAAAAAAAAAAAAAAAAA | |||||||||
gi|52375732|gb|CV226389.1|CV226389 WS0164.B21_C04 PT-DX-A-7 Populus trichocarpa cDNA clone WS0164_C04 3', mRNA sequence CTGCAACTCCAAGCCCAAGAG EST sequence (targeted fragment marked with yellow): GATTTCTTTCTATTTAGCTATTAAACTTTCATGACACATATCTCATGTTTCACGGGTTAACCTGTCAAATTTTTTTAATAAATTTTTTATTTAATTTAATTTGTTAATGTTAAATTTTTTTATTTAGTTATCAAATTTTCATGACACGGAACTCGGGTTTAACGGGTTAATCTGGTTTGACGAGTTAACCTGAATTTTTTTTGTTGCTTTTTTCTTTTTAATTAATTTTTTTCGTTTAATTTATTTTGTTAATTTTAAATCTCTTTCTATTTAATTATCAGAATTTCATGACACATATCTCCGGTTTGACAGGTTAACCTGATTTCACGGGTTAGCCCAATTAATTCTGAGTTAGCCCGTTAATGTTTTTTTCCATGTAGTTATCAAATTTTTATGACGTGAATCCTAGGTTTGACGAGTTAACCTGGTTTGAAGGGTTAACTTAGTTAATTCAGATTTTTTTTTCTTTTTCTTCATTAGTTTTTTTCTTCCTGTTGGTTTTTTTTCTTTGTTTTTTTCTTTTTAGTTAATCTATTTGATTATCACACTTTTATGACACGACCTTGAAACCAGACCCACATACAAGGCTATTGGGTCTGGTGTTGCAGTCAGACTTCCTTAAACTTGATTCATGTAAATTTAATATTATTATTAATATTATAAATATTATCCTTGGGTCAAGTGTTGCAGCTAGACCCAAGATTTTTGGGTATATCTTTGCAGAAAAACTTAACACTCTTAGATCTTAGCCTTTTTTGATATTTATTATGCAAAAAAAAAAAAAAAAAA | |||||||||
gi|24067680|gb|BU876156.1|BU876156 V016H05 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence CTGCAACTCCAAGCCCAAGAG EST sequence (targeted fragment marked with yellow): AGAGAGAGAAACATCAAAGAATAATACTCCCCCCAAATCTTTTTCGTGTTTTATCATCATAAAAATAAATAAAACCATGGATAAATAGAAGATAGAGAAAGGTATAGAGTGTTTTACTTGAAAGAGAGAAAAAAAAAAACCCTTGAGATTTGAGCTTTTCAGTGAGAGAAACTGCTGCTTCTTTACACTGATCTGATCGGCAGCAGTTTTATCCGTGGGATAGAGAATTCAGCTGTTTAAGAGATGTTATCAAGGAACCAAAAGTGAAGGTGGAGAGGCCAGGCTGTGATTCATCGGTTATGGTTGGCTTGCAAAATTGTGTTATTTCGCAGCCTCCTGTCAACTTAGAGCAAGACTTGGGGTTTCTTGAGAAGAATTTGCATATACTGGATTGTGTTTTCTCAGGGAGAAATGATACCAATTCAGAAAATGTTGGAGTTGGTTTGTTTGAGAGGGAGAGTTTGAATGCTGATTATGAACCTATGGACACGGGAGAGAATCGCGATGGGCATGCATCGGAAGACAGTCTCTTGCCTGGTCTTTATGATGATGCTGCAATGTATATTTTGGCTTGGAGTTGCAGATCGGATTACCCCAATTTGGCTTTGCTAAATAAGAAATTCAAAGCATTGATTGAAAGTGGGTGTTTATATAAA | |||||||||