| mature miRNA: CTGCTGGCAGCAGGACCCAA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73880930|gb|DT483668.1|DT483668 WS02523.B21_D21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02523_D21 3', mRNA sequence CTGCTGGCAGCAGGACCCAA EST sequence (targeted fragment marked with yellow): GAGGAAACATACCATCGAAGTAGCTCAAACTGACGAGGTGGAGTCAATTGTGTATAAAAAATATGCCAAGGATGCTTATAGAATGTTCAGGTTACTGTCAAAGGCTGGTCGCTTACTTGAGACTGATAAGGTGATAAGTTTGAATAAATGGATATGTTCTCAGTTCCATTGCAATAGTCATATGATGGAAACCACGGCTTTCTTTCTTGGTTTACAGTGTAGATGAATAATCTTGAAATTGAGAATTATCTATATGTTATTTCTTTCCTGTGAATTTATTATTTAGGTGTACTATGGTCATGTATTGAGGAGAAGCAGATCTCTCTGTAAATTTGAGGAAATGGGTTATCTAGCTCTACAGAAGGTTTAGTGAGTGCTCTTCCTACATTGCTCAATGCTTAGGTTTCAGTCACACCCCACACTCTTGTTGGGGCTGGGTTGACAACCTTAGCACTTTAGGACCTGCAAACATAGGGGTCTGGAAAGCCATTCTGCAGCAATTGGCTCCTGGAGCTACACGAAAACCATCCCATTTGTGTTCTGCTGTCAGCATGGCCAAGCACACTCTCTTCATCTTTCAATCTCAACTGTAGAGTGTTGAGGCCCATGTCTCCGCATAGCATTATTTGTTTTTAGGATTTGCACAAAGGTTAATGTAGGTTAATAGGCTATTTTCTTTTGCTTCTTCTAGAGCTACTTTTAGAGATCGCATTCTAATTAAGAATATCAGCATGCTGTTAGTAGAAAACTTCAACTAAATGAGCCGTATTTCTTTTCCTTTTATTTGTATATAACCATATATTTGAAATGAGGTTAAATGTCTCTGTAGGCTGAAGTTTGCAATACTATAGTACAAAAATCTTGCAACAGGAATATTTTGAGCTTCACTTTTAAAAAAAAAAAAAAAAAA | |||||||||
gi|38574864|gb|CK090539.1|CK090539 F012P29.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F012P29 3', mRNA seque CTGCTGGCAGCAGGACCCAA EST sequence (targeted fragment marked with yellow): TTTATGGCATCAATTACCCATGTTTTTCCGTGATGAACTTCTGTCTTGGTCTTGGAGACGCCCCCTTGGGTTGAATTTGGGCCCTGCTGCCAGTGGGAGTAGTATGACCCCTGCTGATTTCAAGCATAAGGTCCCTCCCAACGTAGCCAATGTCATCACCCGTATCCCTGGAATTGCTCCCCAGTATCTCTTTGAAGAGGAGGAAAATGCTGTGGCCCCCCCCCAGTCGGTGCAGAGGGGTGTCCCTGAGTTGGTAGAAGCTGCTTTGCCCCCAAGGAACTTGTGCATGATGGATCCACCCTGGCACCCCTGGTTTTAACCCATGAATGGAGAGTAGCGATTGAATGTCAATAGTGGTTTTCTATTGTAAATAAAGATTATTATGCCCAGCTGAATCTGGAAATTGCTGCTAGTTGTCATTCATTTTGAAGTCTAAATAGTTACCGGTAGGCTTTTTAATAACACAAAAAAAAAAAAAAAAAAAAAAAAATAA | |||||||||