| mature miRNA: CTTGGCAGCCAGACCCAACA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|24069803|gb|BU878279.1|BU878279 V045C10 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence CTTGGCAGCCAGACCCAACA EST sequence (targeted fragment marked with yellow): CATCCAGAAGGAGTCAACCCTTCACTTGGTGCTTCGGCTGCGTGGAGGAATGCAAATCTTTGTTAAGACTTTGACTGGAAAGACCATCACCCTGGAGGTGGAGAGCTCAGACACCATTGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGAATACCCCCTGACCAACAAAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGACGCACCCTAGCAGACTACAATATCCAGAAGGAGTCCACCCTTCACCTTGTCCTCCGTCTCCGTGGTGGTTTTTAAGCTTCCGCATGTTGTCTTGGGTGTTTTATGCCTCGTGGGGCTTTTGTGTGTGCTCAGTAGCCATTTTCGAATGGCTACTTTAAATAAATTATTACTGTACTCTTTTGAAGTTGGTGTTTGCGTCCAGTTTGGTACTGTTTGGATTGGCTGTTAAGGGCCGTTCCATTGCAA | |||||||||
gi|60694783|gb|DN485373.1|DN485373 M129C09.3pR Populus female catkins cDNA library Populus trichocarpa cDNA clone M129C09 3', mR CTTGGCAGCCAGACCCAACA EST sequence (targeted fragment marked with yellow): GGCCAAGGAGATCATGGCTTTGGCTGCCAAGGGAAGCTCTATTAGCACAGATGGGTGTCCCAGCTCTGCTCCTGCAATAAGAAAAGTCAGCTCCACCAATTCTGTTGCTGCGCTTGATTCCAATAAAGGCCAAGAAAGACTGCAATTACAATCTCAAGCTAATGCTTCAGATGTGCCCCATGCTAGAAGAGCTTCACTTCATCGGTTCTTTTCCAAGAGGAAAGACAGGGTTGCAGCAAGAGCTCCGTATCAGATAAACAACCCAACTCCGGACCATCCTAGGCCTCCCAGATCTGAAGAAGACAGCAACCCGTTTCTTGCCCTAGACGAAGGCCAATCATCAGAACAGCTCGAGCTTAAATTGTAGCTACTAGCTAGCTAGAGATTACATAGCTCACCATTCCGTTAACGTGGCATGATTAGTTCAGTTTAATTAAAATCATTACTAAGTTTACTTACAATGTTGTTGTAGGTATATTTTGCGCCTTGTACGCACACACAAATTTTTCAATAAATCCCTTGTGTGTGTGTATATTGTAATCCACTGCTAAGATTTTCA | |||||||||
gi|18019686|gb|BI138738.1|BI138738 F114P85Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence CTTGGCAGCCAGACCCAACA EST sequence (targeted fragment marked with yellow): GCAGTTTGGTACTGTTTGGATTGGCTGTTAAGGGCCGTTCCATTGCAAGCTGGACGCAAACACCAACTTCAAAAGAGTACAGTAATAATTTATTTAAAGTAGCCATTCGAAAATGGCTACTGAGCACACACAAGAGCCCCACGAGGCATAAAAGACCCAAGACAACATGCGGAAGCTTAAAAACCACCACGGAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCTGCTAGGGTGCGTCCATCTTCCAACTGCTTTCCGGCAAAGATCAACCTTTGTTGGTCAGGGGGTATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCTGAGCTCTCCACCTCCAGGTGATGGTCTTCCAGTCAAAGTCTTAACA | |||||||||
gi|52503209|gb|CV250234.1|CV250234 WS01126.B21_O06 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01126_O06 3', mRNA sequence CTTGGCAGCCAGACCCAACA EST sequence (targeted fragment marked with yellow): TGGCTACTTTAAATAATTATTACTGTACTCTTTTGAAGTTGGTGTTTGCGTCCAGTTTGGTACTGTTTGGATTGGCTGTTAAGGGCCGTTCCCATTGCAAGCTTTCGTATTTAAGCAAATAAATTTTAGTTTATCCAAAAAAAAAAAAAAAA | |||||||||
gi|73893099|gb|DT495837.1|DT495837 WS01121.BR_K01 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01121_K01 5', mRNA sequence CTTGGCAGCCAGACCCAACA EST sequence (targeted fragment marked with yellow): TCCCGACAGTTGTGATTATTTCTTCTCTATCAAAATCTTTAAACAGCTCTCATTCAAGATGCAAATCTTCGTCAAGACTCTTACTGGCAAGACCATCACCCTTGAGGTGGAAAGCTCAGACACTATTGATAATGTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAGCAGAGGCTGATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTTGCTGATTACAACATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGTTTGAGAGGTGGCATGCAAATCTTTGTTAAGACTTTGACTGGAAAGACCATCACCCTGGAGGTGGAGAGCTCAGACACCATTGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGAATACCCCCTGACCAACAAAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGACGCACCCTAGCAGACTACAATATCCAGAAGGAGTCCACCCTTCACCTTGTCCTCCGTCTCCGTGGTGGTTTTTAAGCTTCCGCATGTTGTCTTGGGTGTTTTATGCCTCGTGGGGCTCTTGTGTGTGCTCAGTAGCCATTTTCGAATGGCTACTTTAAATAAATTATTACTGTACTCTTTTGAAGTTGGTGTTTGCGTCCAGTTTGGTACTGTTTGGATTGGCTGTTAAGGGCCGTTCCATTGCAAGCTTTCGTATTTAAGCAAATAAATTTTAGTTTATTCAAAAAAAAAAAAAAAA | |||||||||
gi|52494410|gb|CV241435.1|CV241435 WS02512.B21_D06 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02512_D06 3', mRNA sequence CTTGGCAGCCAGACCCAACA EST sequence (targeted fragment marked with yellow): GGGAAGATGGACGCACCCTAGCAGACTACAATATCCAGAAGGAGTCCACCCTTCACCTTGTCCTCCGTTTCCGTGGTGGTTTTTAAGCTTCCGCATGTTGTCTTGGGTGTTTTATGCCTCGTGGGGCTTTTGTGTGTGCTCAGTAGCCATTTTCGAATGGCTACTTTAAATAAATTATTACTGTACTCTTTTGAAGTTGGTGTTTGCGTCCAGTTTGGTACTGTTTGGATTGGCTGTTAAGGGCCGTTCCATTGCAAGCTTTTGTATTTAAGCAAATAAATTTTAGTTTATTCTTAAAAAAAAAAAAAAAAAAAA | |||||||||