| mature miRNA: CTTTATCTGCATTTGCACCTG species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|18018510|gb|BI137562.1|BI137562 F088P25Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence CTTTATCTGCATTTGCACCTG EST sequence (targeted fragment marked with yellow): GCAGTTGTTTGATATAATATGATAAACAGGCTGCAGGTCATACAGGCAATATTATGCATGCCAATATGTTGCCTTTATCTGCATTTGCACCTGCATCTTATTGCGTTTGTTTTGTTTTTGACTCCACAAACAAAATCAAGTTCTGTCGATACAGTATGTGGGACAATTAGATATGGAAACTAATAAGCTTAGTAGAGGTGCAGGTGCAAGTGCAGGTGAATGCCATTTTGGTAATGTGTTCACTCCCATATATACACAGCAGTGCTGCCTCTTTTCTTTTCATCTGTCTGTGGTTAATTTGCAGTTTCATGGTGGCAGAAATATTGTACTGGTAATCATCAAGGAGAAAGG | |||||||||
gi|60704799|gb|DN494609.1|DN494609 M112H05.5pR Populus female catkins cDNA library Populus trichocarpa cDNA clone M112H05 5', mR CTTTATCTGCATTTGCACCTG EST sequence (targeted fragment marked with yellow): TTCGGCCATTACGGCCGGGGAACAAATGCAAAAGTTGAAAGCTGAAATTAGTGAAAAGAAGCATCAGATGCATGTTCTAGAGCGACGCATGATTGGATCAGTTGAGATGACGTCAAACACATCAACCAGCATTGAAATGCCAAAGGCTTTATCCAAGCTCACTACTCAGCTCAATGAAAAAACATTTGAACTTGAGATTAAGTCAGCAGACAATAGGATACTTCAGGAGCAACTGCAGATTAAGATATCAGAGAACACTGAGATGCAGGAGACAATTCTTCTGCTGCGGCAACAGCTAAATTCATTATCAGAAAAAAGCTCCAGCAAACAGAGAATTGCTGAATCTGAGTCTACCACACACAGAAAGAGCAAAGAAGGGAGGAACGAGATTTGGTCATTTGAAGAAATTTATGCTGATGAAAACACACCAAAAAGTGTCATGAGTTTGAATCAAATATTTTCCCAAGATGACCCCAAAGAGTGCAATGGCACTAGTTTATTGAATTCTCAAGTTCTAATACAGGCTTCTGAGATAGAGAATCTGAAGCAAGAGAAGGTGAAGCTGATTGAAGAAAAGGATGGACTTGAAATTCAAAGCCAAAAACTGGCAGAGGAAGCATCGTATGCAAAAGAATTGGCGGCTGCTGCTGCAGTTGAGCTGCGAAATTTGGCTGAAGAAGTAACCAAGCTGTCTTATGAAAATGCGAAGCTGTCCGGTGATCTGGCTGCTGCAAAAGAGACACAATGCAGATCTAACTGTTGTCAGAGTCCATTTCATATGATTTTACACAAAGTAACTCCATTGGTTCTCTACCTGACGGACGCATTAAAAAACTGAGGATAGTCTTTTGGTGGGGAGTGGCAGAAGGAACTAATGAAA | |||||||||
gi|24066630|gb|BU875106.1|BU875106 V002D08 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence CTTTATCTGCATTTGCACCTG EST sequence (targeted fragment marked with yellow): CCGGGGAATAATAGGATTATTGATGGTCCGATGGATGACTTGACAATCATGAAGGAGACGCTGAGAGTCAAGGATGAGGAATTACAGAATCTGGCTCGAGATCTTCGTGCTCGTGATTCAACAATAAGAGATATAGCGGATAAACTATCTGAGACAGCGGAAGCTGCTGAGACTGCAGCATCTGCTGCTCATATTATGGATGAACAAAGAAGAATTGCTTGTTCTGAAATTGAGCGGTTATCAAAAGCTTCAGAAAAGCAGTTGGAGTCATCCATGTTGAAGTTAAAAGATTTTGAAGAGACGATTGTGGCTCTGAGCAAGGAAAGAGATCAACTGATTAAGCAGAGAGACTCTGCCATTCAGGAGGCAAATTTGTGGCGTTCTGAGATTGCAAAAGCTAGAGAGCGTGCTGTGATATTAGAAGGAGCTGTTGTGAGAGCAGAGGAGAAGGCAAGAGTTGCAGAAGCAGATGTTGAAGCTAGAATAAAGGAGGCTGTGGAGAAGGAGGCAGCTGCCGTGAAGGAGAAGGAGGAGCTTCTAGCATATGCAAATGTGCTACAGGCACAACTTCAAAGGCAGCACCTAGATACAGAGCAAGTTTTCGAGGAGAAGACGGAGACCCCAAATGTTGTTGGTAGAACTCTTCCCTTGACTAAGCATGTGGACATGTCAGATGAGAATGTGGATAAAGCTTGTCTTAGTGTTTCTAGA | |||||||||
gi|18018542|gb|BI137594.1|BI137594 F089P08Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence CTTTATCTGCATTTGCACCTG EST sequence (targeted fragment marked with yellow): CTCATTGTATATAGTACTACTAGTTATAGAGAGTGAGTGACAACTAGTAGCTAGCAGTTGTTTGATATAATATGATAAACAGGCTGCAGGTCATACAGGCAATATTATGCATGCCAATATGTTGCCTTTATCTGCATTTGCACCTGCATCTTATTGCGTTTGTTTTGTTTTTGACTCCACAAACAAAATCAAGTTCTGTCGATACAGTATGTGGGACAATTAGATATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGTAAATGCCATTTTGGTAATGTTATCACTCCCATATATACACAGCAGTGCTGCCTCTTTTCTTTTCATCTGTCTGTGGTTAATTTGCAGGTTTCATGGTGGCAGAAATATTGTACTGGTAATCATCAAGGGAGAAAGGGCAAGAAA | |||||||||
gi|38585250|gb|CK100925.1|CK100925 F010P66.5pR Populus flower cDNA library Populus trichocarpa cDNA clone F010P66 5', mRNA seque CTTTATCTGCATTTGCACCTG EST sequence (targeted fragment marked with yellow): TGGACATGTCAGATGAGAATGTGGATAAAGCTTGTCTTAGTGTTTCTAGAGCTGTCCCAGCCTCCGGGGAGAGTGTTGTGCACATGGCAGTTGATCAAAGCAACCCCCGGCCAGTTGAAGATGCTGAATGGAGCGATATTCAGGCAACAGAGTCAACAATAGCTGATGTGAGAGAAGTTGCCCCTGAGACAGAAGGAAGCAGCCTGGACATTTCTGTTGTTAGCCCACCTGTAAATAATCATCATGAGCAAGGAGCCAATACCTATCATCAGCCTTGATATTCAATGTTGCACATACGACAGGGGATAGAAATCTTTAAAGGTAGGGGACAGCATGCTATTTGAAGTCAATTGACAGTAAAAATCTTGACATTTATCGAAGCTATTTCCTTTCATTTAAGCTGGCTCATTCGATGC | |||||||||
gi|73881508|gb|DT484246.1|DT484246 WS02524.B21_N22 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02524_N22 3', mRNA sequence CTTTATCTGCATTTGCACCTG EST sequence (targeted fragment marked with yellow): AAGGACCGAAGTGCTTCCTCTAAAGACAAGGTCAATGCCAAGAAACAGTCAACCAAGTCCCCATCAAAGGCTTCTGCAAAAGATCAAGGTAAAGCCAAGTCTAACAAAAAGGCCAAGGCAGAACCCACCAGACAAGAGATGCATGCAGTTGTAGTAAATATTCTGAAGGAAGTTGATTTCAATACTGCAACTCTATCTGATATTCTCAGACAACTTGGTGCCCACTTCGGCATAGATCTAATGCATAGAAAAGCGGAAGTGAAGGATATCATTACAGATGTGATAAATAGCATGTCTGATGATGAAGAGGAAGGTGAAGGGGAGGAAGCTGAGGATGATGCTGAAGCTGGTGATGATGCAGATAAAGATGGAGACGAGGAAGATGACTAGTTCATTTTAATACAGATGCTTATTTGACTCTTGTGGAACATGAGGTATGTGGTGTATTCTCCAGACATGATCCTCCACTAGAGGGTTTCAACTGCAGATATTGATGGTGCACTACTGTTGCATTCTGGATCTTGTTATCGTTTCCAGATGAAAATACCCAACTGGGTTTGTTTTGTATCATATGCTTTAGTACCTTTTGCTCTTACAAGTAGTACTGAGCTGACCTAAATGATTGGTAGTTTTATTTCCCCACCCCCACCCCCAACTTAATCCCTTTTCGTTTAGATTTGGTTTTTAGGTGTACTCTTTCCTACAACTGAGTAGAGGTTTGAACTGCAACTCTCATGTGGTCCTTAAAGGTGGTTATAACCATGAACCTTGTAGGTTGAATGTTTTGCAAATTTATTCTAACAGTTGAAAATTCTCTTTAAAAAAAAAAAAAAAAAA | |||||||||
gi|73889107|gb|DT491845.1|DT491845 WS02548.C21_P13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02548_P13 3', mRNA sequence CTTTATCTGCATTTGCACCTG EST sequence (targeted fragment marked with yellow): CAGGCAATATTATGCATGCCAATATGTTGCCTTTATCTGCATTTGCACCTGCATCTTTTGCGTTTGTTTTGTTTTTGACTCCACAAACAAAATCAAGTTCTGTCGATACAGTATGTGGGACAATTAGATATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGTGAATGCCATTTTGGTAATGTTTTCACTCACATATATACACAGCAGTGCTGCCTCTTTTCTTTTCATCTGTCTGTGGTTAATTTGCAGTTTCATGGTGGCAGAAATATTGTACTGGTAATCATCAAGGAGAAAGGGCAAGAAATTCTTGTGCTTATTAATTAACTATGAGAGCAAATTAATGTGTTCAACAACGACAGGCCATGTATAAAATTCTTTATGCAGGTGCTTGGTGTTTATAGAGGTGATGATGAATTGAAGTGATTGTGCAGCCACAATTCAATGGAAAAAAAAGAATATTTCAAGGGTTTTCCAGTAATCTTTGAATTAAGTACTTGGAGGACAGATCATCCATGATCAATACGCAAGGCGCCTGTGCTAGATATGTAGATCTCTTGATCTTCCATTTGAAGCTAGGGTTTTCAAGCTAATATATATAGAAAGTACATTCCCTCTCTGCATCCCTCCCTCCCTCCCTCTCTCTCACTGTCTCCCTCTCTCTCTCACACAGGCAGTACCATTGCCAAATAGGAGGAACATCCATTCTAAGTTCTAATGTTGACATTGGTTGTTCTACAGTTAAAAGTCTCCATGATTGGAAGAAAAGTCGAGCACAAATATTAAGGATTTAAAAAAAAAAAAAAAAAA | |||||||||
gi|38575717|gb|CK091392.1|CK091392 F095P16.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F095P16 3', mRNA seque CTTTATCTGCATTTGCACCTG EST sequence (targeted fragment marked with yellow): CATTGTATAAATACTACTAGTTATAGAGAGTGAGTGACAACTAGTAGCTAGCAGTTGTTTGATATAATATGATAAACAGGCTGCAGGTCATACAGGCAATATTATGCATGCCAATATGTGCCTTTATCTGCATTTGCACCTGCATCTTATTGCGTTTGTTTTGTTTTTGACTCCACAAACAAAATCAAGTTCTGTCGATACAGTATGTGGGACAATTAGATATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGTGAATGCCATTTTGGTAATGTTTTCACTCCCATATATACACAGCAGTGCTGCCTCTTTTCTTTTCATCTGTCTGTGGTTAATTTGCAGTTTCATGGTGGCAGAAATATTGTACTGGTAATCATCAAGGAGAAAGGGCAAGAAATTCTTGTGCTTATTAATTAACTATGAGAGCAAATTAATGTGTTCAACAACGACAGGCCATGTATAAAATTCTTTATGCAGGTGCTTGGTGTTTATAGAGGTGATGATGAATTGAAGTGATTGTGCAGCCACAATTCAATGGATGTGGAAGAATATTTCAAGGGTTTTCCAGTAATCTTTGAATTAAGTACTTGGAGGACAGATCATCCATGATCAATACGCAAGGCGCCTGTGCTAGATATGTAGATCTCTTGATCTTCCATTTGAAGCTAGGGTTTTCAAGCTAATATATATAGAAAGTACATTCCCTCTCTGCATCCCTCCCTCCCTCCCTCTCTCTCACTGTCTCCCTCTCTCTCTCACACAGGCAGTACCATTGCCAAATAGGAGGAACATCCATTCTAAGTTCTAATGTTGACATTGGTTGTTCTACAGTTAAAAATCTCCATGATGGAAG | |||||||||
gi|73886656|gb|DT489394.1|DT489394 WS02542.B21_B17 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02542_B17 3', mRNA sequence CTTTATCTGCATTTGCACCTG EST sequence (targeted fragment marked with yellow): CCACCCCCCTCCCTCTCTCGCTCTATAAATCTTTCCTGGCACTCGGGAAATTTGTCAGAGCCCGGAGGATGAAAGATCAGAGAGGCCAAGCATCGATCGACTAGTTGTTTGGCGTTGAGTAATATTATAAACAGACCAGCATGCCAACATGTTGCCTTTATCTGCATTTGCACCTGCACCTTACTTGTTTCTTTCTTTTGTTTTTGACTCCAAAACCAAAAGTAAGTTTGAAACATTAAAACAAGCTTGAGGTGCAGGTGCAGGTGCAGGTGAATGCCATGTTGGTGTTTTGACACTTGTCGTACTGCCTCTTTACTTTCCTTAATTTGGTCCCTGTGTGGTAACTCGCAGCTTCAAGCTGTCACAAATGTACGGGCTTTTTTATATCTTCAAGGGAAGGGTTAGAGAACTCTTGTGCTATAATCCAAGAGAACAAATGGGTTTTTCAACAGCGACCGAGTCTGACCATTAACTTCTTTATGTAGGTGGCTGGTGTTTATAGAGGTGATGATGATGAAGACATCGTGCAGCCACAAATCCATGGTTGCGGAAGACTATTTTAAGGGTTTTTTGGGAGATCTTTGGTGTACATGAAGGACGGATCCATGAATATGCAAGCTGGTGCCTATCCTAGATATATAGTTCTCGATCTTCCACTTGGGCGCTAGGGTTTTCAAGGTAATATATAGAAATTACATTCAACTAAAAAAAAAAAAAAAAAA | |||||||||
gi|38585866|gb|CK101541.1|CK101541 F095P16.5pR Populus flower cDNA library Populus trichocarpa cDNA clone F095P16 5', mRNA seque CTTTATCTGCATTTGCACCTG EST sequence (targeted fragment marked with yellow): CTCATTGTATATAATACTACTAGTTATAGAGAGTGAGTGACAACTAGTAGCTAGCAGTTGTTTGATATAATATGATAAACAGGCTGCAGGTCATACAGGCAATATTATGCATGCCAATATGTTGCCTTATCTGCATTTGCACCTGCATCTTATGCGTTGGTTTCGTTTTTGACTCCACAAACAAAATCAAGTTCTGTCGATACAGTATGTGGGACAATGGACATATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGTGAATGCCATGTTGGTAATGTTTTCACTCCCATATAT | |||||||||
gi|52496830|gb|CV243855.1|CV243855 WS0253.B21_A15 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0253_A15 3', mRNA sequence CTTTATCTGCATTTGCACCTG EST sequence (targeted fragment marked with yellow): GCTGAAATGGTGATGGAGGCTCATAAGAAAGGGAAGAAACACCTGGCTCGGCTTCAGAAATCTAGTCAAAACGGTGAAGCTGTACAGGCTGATAAGAAGGCAAAAGATTCAGAAGTTGCGGTTAAAGAAACTGAAGATTCAGAATTTGTGGCTGAAAGAGCAACTGATTCAGGACTCGCCGCAAGGGGAACAGACACAGAGAGAACAGAAACTACTGTTGCAAATGCAGATGAACAACGTCCACCTTCTACAATAACAATGGAGAAAGAAGGGGTGCATCAGTCAGAAATAATAAGCAACCAAGAGAAGATGAGCAAGTGAAACAACCATCCTGGAATCTTCAAAAAGTTAAATGTATCGTAGACATAGGTTTGGGGCTGTAAAGGAGTGTTGTTCTGTAGCATATTCGAACCCCTGTTTTTTCATTCGAGTCGTAAAATTGTGAGACGATGCCTGCAGATCATTCAAATCTGGAAACTCGGCAGATTAGATAGTCTCCTTGACAAGGTCTTTGGAATGAAATGTTCTTCATGCTGACGTGACCATAAAGTCTTAAAAAAAAAAAAAAAAAA | |||||||||
gi|73880500|gb|DT483238.1|DT483238 WS02522.B21_A17 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02522_A17 3', mRNA sequence CTTTATCTGCATTTGCACCTG EST sequence (targeted fragment marked with yellow): GCCTGGGTTCATCTGCTGCCCTTTGTGTTGCATTCTCAGCAGCTCTTCTTGCTTGCTCAGACTCTGTAAACGTGGACATGAAACAACAAGGGTGGTTAATTGTTGGGGAGTCTGAGCTTGAATTATTGAACAAATGGGCTTTTGAAGGTGAAAAGCTAATTCATGGAAAGCCATCTGGGATTGACAACACTGTTAGCACTTATGGCAATATGATCAAGTTCAGGTCAGGTAATTTAACACGTATCAAGTCCAGCATGCCCCTCAAAATGCTCATTACTAACACAAAAGTTGGGAGGAACACAAAAGCATTGGTTGCTGGAGTTTCAGAAAGAACCTTAAGACACCCTGATGCCATGAATTCTGTTTTTAATGCCGTTGATTCCATCAGTAAGGAATTGGCTAATGTCATCCAGACACCTGCTCCAGATGATCTGTCCCTGACTTCGAAGGAAGAGAAGTTGGAAGAGTTAATGGAAATGAATCAAGGTTTGCTTCAATGCATGGGGGTAAGCCATGCTTCTATAGAAACTGTTCTTCGAACAACATTGAAATACAAGTTAGCTTCTAAGTTGACTGGAGCTGGAGGTGGTGGCTGTGTGCTGACATTGTTGCCGACCTTACTGTCAGGAACAATTGTAGATAAAGTAATTGCTGAGCTGGAGTCTTGCGGATTCCAATGTTTGATTGCTGGAATTGGCGGGAATGGTGCTGAGATTTGCTTCGGTGCTTCATCCTGATTATAGGAAGTGCTAACAAACCAAGGGTAAGATCTGATCTCTAATGTTAATTTCCAAAATAAAAACTTGAAAATGGATGTTTTGGTATTCAATATCATCATCCATGTTTACTGTACATTAGGTTGTTGCTGTACTCTTTTTCCTTTTTGGATTTAGTTTAAACAAAGTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|18016482|gb|BI135554.1|BI135554 F054P61Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence CTTTATCTGCATTTGCACCTG EST sequence (targeted fragment marked with yellow): CTCATTGTATATAATACTACTAGTTATAGAGAGTGAGTGACAACTAGTAGCTAGCAGTTGTTTGATATAATATGATAAACAGGCTGCAGGTCATACAGGCAATATTATGCATGCCAATATGTTGCCTTTATCTGCATTTGCACCTGCATCTTATTGCGTTTGGTTTGGTATTGAATCCAAAAAACAAATCCAAGTTCCGTGCCGATCCAGAATGTGGGACAATTAGATATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGTGAATGCCATTTGGGTAATGTTTTCACTCCCATATATACACAGCAGTGCTGCCTCTTTTCTTTTCATCTGTCTGTGGTTAATTTGCAGTTTCATGGTGGCAGAAATATTGTACTGGTAATCATCAAGGAGAAAGGGCAAGAAATTCTTGTGCTTATTAATTAA | |||||||||