| mature miRNA: GATGATGCTGCAACAGCAGCA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73896505|gb|DT499243.1|DT499243 WS0117.BR_L13 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0117_L13 5', mRNA sequence GATGATGCTGCAACAGCAGCA EST sequence (targeted fragment marked with yellow): GACACTTTCTCTTCTCTTTTGCATTCACCCCAGGAAAAGGAAAGACACAATCTTTTCAGTTTTTATGATCCTTCACTTTCTCCCCCATAAAATTAATTAAATCTCTCACTTGCGCTGCTGCTTAATTAACAAGTTTACATTATTAATATTAAATAGAAAAAAAAAAAAACCAAACATCGTCCTCCTAGTTTGTTCACAATGGCGGGCATAGCAATAGTATTAGATCTGTTGTCAAGGAAAAACCCTTCTTCTTATCCAACCCACTTCTCGGCCTCCGCTGCCGCCGCCTCCATCGCCGCCTCCGCCGCCCCTTTTGCTTCTAGGTTCCTGTTCGGGCAACCCATGATACCAGTTGCTTACTGTGATGCTGGTGCAGCATTGTCTGGTGACTATATTTCTAGTATACGAAGAGCATCTGCAGATATTTTTCAGAAAGGCTCTCTGAAATACACTACCAAGGAGTATTATATTGAGTTGAAACCTCTGTTTTCAGCTTTTGAATGGAAGCAACTTGCTATGACATCCTTGAGGTCATTTTTGATGTTCTATTTACCTCTTCTGGAGCCTAGTACTAATA | |||||||||
gi|73885930|gb|DT488668.1|DT488668 WS02537.B21_B09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02537_B09 3', mRNA sequence GATGATGCTGCAACAGCAGCA EST sequence (targeted fragment marked with yellow): TGCTTTCACCTTTGCATTGGCATGATTACAAGAAAAAATATGGAAAGCTAGAGGACTTTGTGGGTGGTCACCCAGAATTGTTTTTGATCGAGGGTGACTTTATCCAGCTTCGGGAAGGAGCTCAAGAAATGATAGCTGCTACAGCAGCTGTTGCTAAAGTTGCTGCTGCTGTTGCAGCATCATCTCCTTACTCATCATTCTTGCCTTCTGTGGCTGTTACTCCCATGGCACAATCTCATCGACTTAAGAAGGTTCCGTCAATTGAATCAAAGTTTTCTAATGGTGTTAATTTTGGGGTTGCTGGAGGCATATCAAATGTAAAATTTTTGAGCAAATCAAAAGATTCTCAAGAACTAAATGTGCCAGATTTTGATAGATCCAGCGTAAGCAGTACTCAAAGCAAGGGCTCAATTCATGGGACATCTAACTCAATTTATACTGGAAAACAGCAGAGCAGGACAACTGGAGCTGCATTAACTTCTAGAAGATAGTATGGAGGCAATGTCCAACATATGAATGAATTCATGGAGTTAACAGGAGTGCAGATTGGGCATTTATGGGAGCGATCTGTGGTAGAATTGTGCTCTTGATGAAATTGCCAGCCATCTTTTGCTTTTGATAGAATCCCCCATTGGACTTAGCTGATTTTTTTTTATCCTCTTTAGTTTTATGCTTTTGGAAAAAACCTGCTTTTTGTGTGTTTATGATACCGAAGACGAACTCGTTCAACTTTCTGCATTGATATTCATGCACACAATTGCTTCTGTGCATTTGATAGTCCATAAAAAAAAAAAAAAAAAAAA | |||||||||