| mature miRNA: GCAGGCCCTTCTGGAGTATCT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|38575184|gb|CK090859.1|CK090859 F028P38.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F028P38 3', mRNA seque GCAGGCCCTTCTGGAGTATCT EST sequence (targeted fragment marked with yellow): TCAAAGACTCTTTATGTAAAGAACTCTTTCAGAATCAGACAAGGAAATTCTTGCAGCATTCCCATGGCAAACACCAAGGAACATGTGTGCCTGACCAATGAAATGTTGATTTTGATGATCAGCCAAGTCAAGAACCTTACGAGCAAAATTTATGCCTTCATGGGCATGCTTTGAGTCTTGGGAACACAACTTCGCTCCCAACAAAAAGGAAGGGATATGTGGTTTGTTCTTTGATTCTGAACAACCAGAAACTTTCTTTAGCAGGTTCAGAGCTGCTTCGTTCTGACCTGCAGCACTGTAACAAAGAGCAAGAAGGTACCATCTCTCAGCTCGGTTATAGATACCTGGAAGGGCCTGCTCCACATGTTCAGCTAATAACTCAAATTGCCCCACAATTGAGAGTGCATAAGTCAGATGGTCCATGATTTCTTCATCCCGCTTTATTTCCCCACAAGCCACCTTACTCATGAGTACTAATAACAAGAGAATTGCTTCCTCTATGTTACTCTGGGGGCTAGCAAGACCCCATAGCTGTAACTGAGGGGGAAGTGTTGCTTCAACAGCACTATAAAGTAACATAGAAGCTAATTCCTTCTGCACTCCAGCCAACTTCTGTGGGTTCAAATTCCATGGCCTGATGAGAACCCTACGATATGAAGCAATAGCTTGGTCGAGCAAGCCCGCCTTTGTCCACAGAGCAGGTAGCAACTCTAATGCTTTGTGAAACATCTCCTCCAGCTTGCAGTCTTCACCAATGCCTTCAGGAATGCCATTGGGCAGTGCTGATTCAACTATGTCCAAAATAATTCCGCATTCCTTTGCAGCCTCTCTATACTGCGCAAGTT | |||||||||
gi|52498358|gb|CV245383.1|CV245383 WS0257.B21_E07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0257_E07 3', mRNA sequence GCAGGCCCTTCTGGAGTATCT EST sequence (targeted fragment marked with yellow): ATAATGAAACCAAGATAGCAGATACTCCAGAAGGGCCTGCTCAAGCTGAACCTCGTAATGAAACCAGGATAGCAGATCCTCCAGAAGGGCCTGCTCAAGCTGAACCTCGTAAGGAAACCAGGATAGCAGATCCTCCAGAAGGGCCTGCTCAAGCTGAACCTCGTAATGAAACCAAGACAGCAGATCCCCCAAAAGGAGAGAGTGCTGAATTTAGCAGCCAGAAGAAAATTGACGAGCGAGAATTCAGTTAAAGCACAGTATGCAGGGTTTGTGAAAATGCACGTTGCAGGTGTACTTTCTTTAATCCTCGATTCCTTGTATGCTAATAAGTTGTCCTTTCCTGCTATGTAGTGATACATCGATAATCAGGCTGTTTTTATTAGTTAAGAGATTTTACGTAATTAAGTTGGTTATACTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73886555|gb|DT489293.1|DT489293 WS02538.B21_N06 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02538_N06 3', mRNA sequence GCAGGCCCTTCTGGAGTATCT EST sequence (targeted fragment marked with yellow): GTGATCTTACAGTTGGAGATGGAAGTTCATTCCCCATGCAATATTCGTTGGAGTCGTTTGTTCACCAGGATCCATTGTCTCCTCCTGAAAGCTATCCTATTCCTGACACGGGATTGCATGGTGCAGATCATGGTACTCTTCCATATAACTCTGGGGGGGTATCAATTGAGGAAAAGAATGAAACACTTGTAACAACTCGGAACAGCCTGGAACTTCTTTCTAGTATTTTGAATGCTGAAACTGAGCCAAAACCCGTTAAGGATAGCAGATCCTCCAGAAGGGCCTGCTCAAGCTGAACCTCGTAAGGAAACCAGGATAGCAGATCCTCCAGAAGGGCCTGCTCAAGCTGAACCTCGTAATGAAACCAAGACAGCAGATCCCCCAAAAGGAGAGAGTGCTGAATTTAGCAGCCAGAAGAAAATTGACGAGCGAGAATTCAGTTAAAGCACAGTATGCAGGGTTTGTGAAAATGCACGTTGCAGGTGTACTTTCTTTAATCCTCGATTCCTTGTATGCTAATAAGTTGTCCTTTCCTGCTATGTAGTGATACATCGATAATCAGGCTGTTTTTATTAGTTAAGAGATTTTACGTAATTAAGTTGGTTATACTTATCTCCCTCGTACTTTACCAGCTGGGAATGATTTCTGGGTTTTGCATTCCTGTGTATTACAAAAAAATCATGTCAGATTATTGCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|38575307|gb|CK090982.1|CK090982 F036P72.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F036P72 3', mRNA seque GCAGGCCCTTCTGGAGTATCT EST sequence (targeted fragment marked with yellow): CCAGGATAGCAGATCCTCAAGAAGGGCCTGCTCAAGTTGACCCTCGTAATGAAACCAAGACAGCAGATCCCCCAAAAGGAGAGAGTGTTGAATTTAGCAGCCAGAAGAAAATTGACGAGCGAGAATTCAGTTAAAGCACAGTATGCAGGGTTTGTGAAAATGCACGTTGCAGGTGTACTTTCTTTAATCCTCGATTCCTTGTATGCTAATAAGTTGCCCTTTCCTGCTATGTAGTGATACATCGATAATCAGGCTGTTTTTATTAGTTAAGAGATTTTACGTAATTAAGTTGGTTAAACTTATCTCCCTCGTACTTTACCAGCTGGGAATGATTTTTGGGTTTTGCATTCCTGTGTATTACAAAAAATCATGTCAGATTATTGCCACGGGCTTGGTTTTTTCTCTGCCATTTTATTTAATTCGGTGTTTTTTTTT | |||||||||
gi|73886122|gb|DT488860.1|DT488860 WS02537.B21_K08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02537_K08 3', mRNA sequence GCAGGCCCTTCTGGAGTATCT EST sequence (targeted fragment marked with yellow): GGGATTGCATGGTGCAGATCATGGTACTCTTCCATATAACTCTGGGGGGGTATCAATTGAGGAAAAGAATGAAACACTTGTAACAACTCGGAACAGCCTGGAACTTCTTTCTAGTATTTTGAATGCTGAAACTGAGCCAAAACCCGTTAAGGATGATCTTACAGTAAGCTTGGTGGACAAGTGCAAGCAGTCACAGCCTGTCATTCAGAGGATCATAGAGAGCACCACTGATGACGAGGCAATGCTTTTTGAGGCCCTGAATCTCCATGATGAGCTCCAACAAGTCATTCTCCGATACAACGAGTTGGAAGCTGGTATAAAATCCAGAGAGCACCTGCCTGAAAGTTCCAGTAACACCGGGGCCAATATATTGCCTGCTCAAGTTGAACCTCATAATGAAACCAAGATAGCAGATACTCCAGAAGGGCCTGCTCAAGCTGAACCTCGTAATGAAACCAGGATAGCAGATCCTCCAGAAGGGCCTGCTCAAGCTGAACCTCGTAAGGAAACCAGGATAGCAGATCCTCCAGAAGGGCCTGCTCAAGCTGAACCTCGTAATGAAACCAAGACAGCAGATCCCCCAAAAGGAGAGAGTGCTGAATTTAGCAGCCAGAAGAAAATTGACGAGCGAGAATTCAGTTAAAGCACAGTATGCAGGGTTTGTGAAAATGCACGTTGCAGGTGTACTTTCTTTAATCCTCGATTCCTTGTATGCTAATAAGTTGTCCTTTCCTGCTATGTAGTGATACATCGATAATCAGGCTGTTTTTATTAGTTAAGAGATTTTACGTAATTAAGTTGGTTATACTTATCTCCCTCGTACTTTACCAGCTGGGAATGATTTCTGGGTTTTGCATTCCTGTGTATTACAAAAAAATCATGTCAGATTATTGCCACGAGCTTGTTTTTTTCTCTGCCATTTTATTTAATTCGGTGTTTTTTTTTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73886122|gb|DT488860.1|DT488860 WS02537.B21_K08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02537_K08 3', mRNA sequence GCAGGCCCTTCTGGAGTATCT EST sequence (targeted fragment marked with yellow): GGGATTGCATGGTGCAGATCATGGTACTCTTCCATATAACTCTGGGGGGGTATCAATTGAGGAAAAGAATGAAACACTTGTAACAACTCGGAACAGCCTGGAACTTCTTTCTAGTATTTTGAATGCTGAAACTGAGCCAAAACCCGTTAAGGATGATCTTACAGTAAGCTTGGTGGACAAGTGCAAGCAGTCACAGCCTGTCATTCAGAGGATCATAGAGAGCACCACTGATGACGAGGCAATGCTTTTTGAGGCCCTGAATCTCCATGATGAGCTCCAACAAGTCATTCTCCGATACAACGAGTTGGAAGCTGGTATAAAATCCAGAGAGCACCTGCCTGAAAGTTCCAGTAACACCGGGGCCAATATATTGCCTGCTCAAGTTGAACCTCATAATGAAACCAAGATAGCAGATACTCCAGAAGGGCCTGCTCAAGCTGAACCTCGTAATGAAACCAGGATAGCAGATCCTCCAGAAGGGCCTGCTCAAGCTGAACCTCGTAAGGAAACCAGGATAGCAGATCCTCCAGAAGGGCCTGCTCAAGCTGAACCTCGTAATGAAACCAAGACAGCAGATCCCCCAAAAGGAGAGAGTGCTGAATTTAGCAGCCAGAAGAAAATTGACGAGCGAGAATTCAGTTAAAGCACAGTATGCAGGGTTTGTGAAAATGCACGTTGCAGGTGTACTTTCTTTAATCCTCGATTCCTTGTATGCTAATAAGTTGTCCTTTCCTGCTATGTAGTGATACATCGATAATCAGGCTGTTTTTATTAGTTAAGAGATTTTACGTAATTAAGTTGGTTATACTTATCTCCCTCGTACTTTACCAGCTGGGAATGATTTCTGGGTTTTGCATTCCTGTGTATTACAAAAAAATCATGTCAGATTATTGCCACGAGCTTGTTTTTTTCTCTGCCATTTTATTTAATTCGGTGTTTTTTTTTCAAAAAAAAAAAAAAAAAA | |||||||||