mature miRNA: GCCCAACTCCATGTTGGGTCTG species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|24062260|gb|BU870736.1|BU870736 Q017G07 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence GCCCAACTCCATGTTGGGTCTG EST sequence (targeted fragment marked with yellow): GGGTTTCCCTTCGAAATTTTGCCAAACCCAACATGGAGTTGTGCCCTTGCGTAAAAAATATCCTTCTACTGGATTTTGAAGGGAAGCGTGTGGCTTCCAAGTATTTTTGTGATGACTGGCCAACTAATGGTGCCAAAGAAGCTTTTGAGAAAGCTGTGTTTAACAAGACTCAAAAGACTAATGCACGCTCGGAAGTTGAGGTAACAATGCTTGAGAACAACATTGTTGTTTATAAGTTTGTTCAAGATCTACACTTTTTTGTTACTGGAGGTGAAGAAGAAAATGAGGTCATCTTAGCCACAGTCCTTCAAGGTTTCTTTGATGCAGTTGGCCTTCTCCTTAGAGGCAATGTGGAGAAAAGAGAAGCACTTGAGTATCTAGATCTCATCCTGTTGTGCATTGATGAAATTGTTGATGGCGGTATTATTTTGGAAACCGATGCAAATGTCATTGTGGGGAAGGTTGCAAGTCATAGTACAGTTGCTGAAGGATTGTCTGAGCAGACATTTTCACAAGCACTGGCAACTGCGCGGGAACATCTAGCAAGGTCCCTTCTTAAGTGATAATTGCACCAGGCAAAAGGAGAGGAAAATAGAGGGTTCTTCTGTGTATATTTTTA |