| mature miRNA: GCGAATCAGCTTTCGCTGCC species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73887666|gb|DT490404.1|DT490404 WS02544.B21_N24 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02544_N24 3', mRNA sequence GCGAATCAGCTTTCGCTGCC EST sequence (targeted fragment marked with yellow): CTGTCATTTCCCCCGATACCTCGTCACTGATTCAACCCGATTTTTCCATCTCTTCTCGTATTCTCTTCTCTCTCACTGAACCAGGCTATTGAGGTGACATGAGTGATTCAATTGATTTATCCGGTGATGGAGGTGTTGTCAAGACAATCTTGAGGAAAGCGAAAGCTGATGCGCTTTGTCCTTCGGATGATCTTCCTCTTGTTGATGTTCAATACGAGGGCACACTTGCTGAAACCGGTGAAGTTTTTGATACGACACGCATGGATAATACTGTGTTCTCATTTGAACTTGGGAAGGGCTCGGTGATTCAGGCATGGGAGATTGCAGTGAAAACCATGAAGGTTGGGGAGGTTGCAAAAATTACTTGCAAACCAGAATTTGCTTATGGCAGTGCAGGTTCCCCGCCAGATATCCCACCTGACGCAACTCTTATTTTTGAGGTGGAGTTGGTGGCCTGCAAGCCACGGAAGGGTTCCAGTGTGACCAGTGTTTCAGAAGAGAGGGCCAGGCTCGAGGAGCTGAAGAAGCAGAGGGAGCTTGCTGCAGCAGCTAAAGAGGAAGAGAAGAAGAGGAGAGAAGAAGCTAAAGCCGCCGCTGCCGCCAGAATACAAGCCAAGCTGGAATCGAAGAAAGGTCAAGGGAAGGGGAAGGGAAAGGCAAAATAGGGCCATGTCGCTGTTAACTTCATGAAGAACGAATATTAGATAAATGAGATGATACATGCAGGAAACATTTGTCGTGTGCTTATTGACTTTGACCATATGATGATATGAAAGACCTTTAAACTAAAAAAAAAAAAAAAAAA | |||||||||
gi|52381130|gb|CV229051.1|CV229051 WS01912.B21_B08 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01912_B08 3', mRNA sequence GCGAATCAGCTTTCGCTGCC EST sequence (targeted fragment marked with yellow): TCAAGACAATCTTGAGGAAAGCGAAAGCTGATGCGCTTTGTCCTTCGGATGATCTTCCTCTTGTTGATGTTCAATACGAGGGCACACTTGCTGAAACCGGTGAAGTTTTTGATACGACACGCATGGATAATACTGTGTTCTCATTTGAACTTGGGAAGGGCTCGGTGATTCAGGCATGGGAGATTGCAGTGAAAACCATGAAGGTTGGGGAGGTTGCAAAAATTACTTGCAAACCAGAATTTGCTTATGGCAGTGCAGGTTCCCCGCCAGATATCCCACCTGACGCAACTCTTATTTTTGAGGTGGAGTTGGTGGCCTGCAAGCCACGGAAGGGTTCCAGTGTGACCAGTGTTTCAGAAGAGAGGGCCAGGCTCGAGGAGCTGAAGAAGCAGAGGGAGCTTGCTGCAGCAGCTAAAGAGGAAGAGAAGAAGAGGAGAGAAGAAGCTAAAGCCGCCGCTGCCGCCAGAATACAAGCCAAGCTGGAATCGAAGAAAGGTCAAGGGAAGGGGAAGGGAAAGGCAAAATAGGGCCATGTCGCTGTTAACTTCATGAAGAACGAATATTAGATAAATGAGATGATACATGCAGGAAACATTTGTCGTGTGCTTATTGACTTTGACCATATGATGATATGAAAGACCTTTAAATTAAAAAAAAAAAAAAAAAA | |||||||||
gi|52503722|gb|CV250747.1|CV250747 WS0114.B21_J23 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0114_J23 3', mRNA sequence GCGAATCAGCTTTCGCTGCC EST sequence (targeted fragment marked with yellow): TGGCATAAATGAGTTAGTCAAGAAGCTGAAGGCTAAGAACACAAATGTTTATCTGATCTCCGGGGGCTTTCGTCAAATGATCAATCCTGTTGCATCAATCCTTGGTATTCCACCCGAAAACATATTTGCAAACCAGCTACTCTTTGGAAGTTCTGGGGAGTTTGTAGGGTTTGATGTGAATGAGCCTACTTCCAGGAGTGGAGGAAAAGCAACGGCAGTTCAGAAAATAAGGAAGGTCCGTGGATACAAGGCTCTGGTTATGATTGGGGATGGTGCAACAGATCTTGAGGCTCGTAAACCAGGAGGCGCTGACTTGTTTATTTGCTATGCGGGTGTTCAACTTCGAGAGGCTGTTGCTGTGAAAGCTGATTGGCTGGTTTTCAATTTTGCAGATCTGATCAATTCCTTGGAATAGCTTGAAATTCACTGTTCATATGAGAGCATCAATCAAGAAGAATCAGCATTTGGTTTCCTTCTCATGCTCCTATTATATAGATTAAGCCTCTGTTGACCAATCAAAAGTATTTCCCCATGGAACTGTGATGGGATGCAAATGGGAGAGTTCAGTGTTAATTTTTTCTTCTTTGTCGATCACTATTTTGTACATCATGATGCTACATATCTGGAACTGATGGTGTGGTTTTTTTGCGATTATACGTGTGTTTGTGGAATGCTAAATTGTACACGCAACTTGATTCTGGAAAAAAAAAAAAAAAA | |||||||||