| mature miRNA: GGCAGAGCATGGATGGAGCTA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73895257|gb|DT497995.1|DT497995 WS0114.BR_B07 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0114_B07 5', mRNA sequence GGCAGAGCATGGATGGAGCTA EST sequence (targeted fragment marked with yellow): GACCCAAGGGGAAGCGTGTTCCAAAACTTTGTTGTAAGCTTTTTTTTCAAGGAGAAGGCTGAGGCTTTGAGAGGTTAATTTTGGTGGCAGTAGCTGGCATGGTATGGAAGCACAATGAAAGGTGAAGGTACGTAAACAGGGATCGTGGGGAGAGGGAGCAGAGACAGATGAAGACGGGGAACAGGCAGAGCATGGATGGAGCTACTAACAGAAGTACTTGTTTTGGCTCTACCCATGCACTGCCTCTTCCCTGGCTTGTGGCTCTTCCTTTTCTCCTCCCTTCTTTTGTTTCCATTAACTTTTTTTTTTGTCACTTAATTTAGAACTGTGATAAGCGATATATAGTAGCAGCAGCTGCACTTTATTCAACAAGAAGAAAAAAAATCGTCCTAGCACTGACCATTAGTGATTTATGACATCATTGTATTAAATGCTATTTATTTGTTTCTCTTTTTAGCCCTAATCTTTCTGCAGAGAAAATAATCCATATGATCGAAAT | |||||||||
gi|38574832|gb|CK090507.1|CK090507 F010P62.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F010P62 3', mRNA seque GGCAGAGCATGGATGGAGCTA EST sequence (targeted fragment marked with yellow): AGGCTTCATTGACTTTGTTTCTCATTGGCTGAAGTAAACCCAAAGAAACGCCCTTCTGCATCCGAGGCTTTGAAGCCACCCTTGGCTATCATACCCTTATGAACCCATATCAGCTTGAACTGACTGAAGATTTTTCATGGTGGTTGGAGGGAAGGAGCAACTGATATTGGTAATATATTTAAATTGATCTGGAAAGCGGGCATGCCACATCGCATAGCTGTATGCATTGAAAGGTGTGTTTGGTTTCCTTTGGTGATATCTCCCCTTCCCCTTGGCAAGTTGTATTTTAATTTTACCATAATTGTAATTCTTCACGCACTTTGTATTCTTAGGGATTTTCTTTGTCCACTTTGTTTGATCTGGTGGAAGGGGAATCTTAAAAATCTTGCTGTACATGATGGTGGCAATTTTTTTTAGGTTATTAGTAATAGCATGTGAAAAAATAGCTGCTTATCCAATTTTGATTGGCTTGCTCCGGACAAGAACTTCACTGCAGCATCCCATTTGAGTTTGATGGAAGCCCAGTGAGAGCATTTCAGAAATTTTTAGTTTGCTAATGTTTGATGCGTAGATTTTATGGTCTAGTAGTGAGAATGTTTCAGTGGTTTCATTCAAGCTCTGCTGGCTGCTGGCTGCTGGCTGCTGGCTGCTGGCTGCTGGCATGCATCTCTTTGTTAGGTAGGTCTCTGTACATTTTCGGGTTGGCAGCATCGATGAAAATGTCTTCATAGAAGTTTCTTTGGTTCGGAGGTCAACGATTGACTTAATTATAACCATAATTAATATAATTAATTAATTATTGGAGTTTCCATAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|52389061|gb|CV232975.1|CV232975 WS0199.B21_E04 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS0199_E04 3', mRNA sequence GGCAGAGCATGGATGGAGCTA EST sequence (targeted fragment marked with yellow): TTTTGATTGGCTTGCTCCGGACAAGAACTTCACTGCAGCATCCCATTTGAGTTTGATGGAAGCCCAGTGAGAGCATTTCAGAAATTTTTAGTTTGCTAATGTTTGATGCTTAGATTTTACGGTCTAGTAGTGAGAATGTTTCAGTGGTTTCATTCAAGCTCTGCTGGCTGCTGGCTGCTGGCTGCTGGCTTGCATCTCTTTGTTAGGTAGGTCTCTGTACATTTTCGGGTTGGCAGCTTCGATGAAAATGTCTTCATAGAAGTTTCTTTGGTTCGGAGGTCAACGATTGACTTAATTATAACCATAATTAATATAATTAATTAATTGTTGGAGTTTCAGAAAAAAAAAAAAAAAAAA | |||||||||
gi|52376694|gb|CV226854.1|CV226854 WS0165.B21_H18 PT-DX-A-7 Populus trichocarpa cDNA clone WS0165_H18 3', mRNA sequence GGCAGAGCATGGATGGAGCTA EST sequence (targeted fragment marked with yellow): GAATTTACTTAAATTTTAGCATTTATTTTGAGAACTATTACAAACACAAACCCCAAAGGATAACAGGGTGCCCTAGTCTTCATCCTCTGTCTCTTCGTCATCGTCCTCGTTCCCTCCATATCTCCATCCATCCTCTGCATTGTCGTGATCCTCTTCCTCGGTTTCTTCACTGTCTTCTTCGTAAGTGTCATCCTTAACTGGCCAAGGTTTTTTCACTACATTTAATGTGGCAGGGGATGAACTTGAACCTTTCCGTTGTCTGATTTTTACAGGAGGCGTCTTCAAGTTTGGCTTGGGCCTGCTGTGTTTCTGACTTTTCCCATTCACACGCTTTCCACCATAAGCATCTTGATCACTGGCTTCATCCATCTCATTATCAGCATTAGAATTTGCATTCTCAGCATTCTCATCTGCCATGTGGTCAGGATGCTCTCTTCTCAGATGAAGTTTGAGCTTGTATTCATGGATGTAGTCCTTTTCACACCCTTCGTAAGGGCAAATGTATGGTCTATCTGATGAAGCAGAGCCATAAACCCCAGAAGGAGGCTTGGGATTTTTCAGTATCCTCTCTGGAGGTGTAGCATATCTCACCACATCCGGTGTCGGATTCTTTTCATGATGAGATGCGATGTGGTTCTTCAGCTTGTATTCATG | |||||||||