| mature miRNA: GGGATCGCCAGATGGGATCTC species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73868538|gb|DT471276.1|DT471276 WS01213.BR_D18 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01213_D18 5', mRNA sequence GGGATCGCCAGATGGGATCTC EST sequence (targeted fragment marked with yellow): AACAACTACTTCATGCCTAGCAATTATACAACAAGCCGATTATACACCCCTGATCAATATGCCAAGGTTTTAATTGACCAGTATAGTCAGCAAATAAAGCTTCTGTACCACCTAGGAGCCAGGAAAATTGCCTTGCCTGGACTTCGACCAATAGGCAGCATTCCATACTCATTTTCTACTCTATGCCGCAACAATGTCTCTTGTGTGACCAATATAAACAACGCAGTCCTCCCTTTTAACGCAGGACTTGTATCACTTGTTGATCAACTGAATAGAGAGTTGAATGACGCACGCTTTATATACCTGAATTCTTACTGGGATGGCATCTGGCGATCCTTCTGTGCTCGGGTTTAGGGTTACAAACGTTGGATGTTGTCCAGCACGTAGTGATGGCCAATGCATTCAAGACCCATGCCAAAATAGGACTGAATANTGCGTTTTGGGATGCAATTCATCCTACCGAAGCTTTGAACCAATTCACTGCAAGAAGATCGTACAATGCCATTCTTCCATCTGATGCTTATCCAACCGATATCAGTCATTTAATCAGTTAACATGCAGATCTAAGTCAAGGAAGATAATATTCCATAAATAATATAATAAATAATTTA | |||||||||
gi|52395182|gb|CV236017.1|CV236017 WS01222.B21_H24 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01222_H24 3', mRNA sequence GGGATCGCCAGATGGGATCTC EST sequence (targeted fragment marked with yellow): ATATAAACAAAGCAGTCCTCCTTTTAACGCAGGACTTGTATCACTTGTTGATCAACTGAATAGAGAGTTGAATGACGCACGCTTTATATACCTGAATTCTACTGGGATGTCATCTGGCGATCCTTCTGTGCTCGGGTTTAGGGTTACAAACGTTGGATGTTGTCCAGCACGTAGTGATGGCCAATGCATTCAAGACCCATGCCAAAATAGGACTGAATATGCGTTTTGGGATGCAATTCATCCTTCCGAAGCTTTGAACCAATTCACTGCAAGAAGATCGTACAATGCCATTCTTCCATCTGATGCTTATCCAACCGATATCAGTCATTTAATCAGTTAACATGCAGATCTAAGTCAAGGAAGATAATATTCCATAAATAATTTAATAAATAATTTATAGAAAATAAGGTGGTCTTGGTCACTTTGTTACGATGATAAAATTATGCAAAACAGCAGTCTAATAATATGACTTCTTGTAAACGAAAAAAAAAAAAAAAA | |||||||||
gi|52396291|gb|CV236571.1|CV236571 WS01224.B21.1_J17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01224_J17 3', mRNA sequence GGGATCGCCAGATGGGATCTC EST sequence (targeted fragment marked with yellow): GGGCAGCAGGGATTCGTGATGAGAGTGGAAGGCAACTGGGTGATAGAATCAGCCTAAATGAGCAATTGCTGAATCATGTTACTACATTGAGTCGCTTGATTCAATTACTAGGGACTAAGCAGGCAGCAGAAAATTACCTTAATAAGTGCTTGTATTATGTCAGCTTGGGCAGTAATGACTACTTAAACAACTACTTCATGCCTAGCAATTATACAACAAGCCGATTATACACCCCTGATCAATATGCCAAGGTTTTAATTGACCAGTATAGTCAGCAAATAAAGCTTCTGTACCTCCTAGGAGCCAGGAAAATTGCCTTGCCTGGACTTGGACCAATAGGCAGCATTCCTTACTCATTTTCTACTCTATGCCGCAACAATATCTCTTGTGTGACCAATATAAACAACGCCGTCCTCCCTTTTAACTCAGGACTCGTATCACTTGTTGATCAACTGAATAGAGAGTTGAATGACGCACGCTTTATATACTTGAATTCTACTGGGATGTCATCTGGCGATCCTTCTGTGCTCGGGTTTAGGGTTGTAAACGTTGGATGTTGTCCAGCACGTGGTGATGGCCAATGCATTCAAGACTCAACCCCATGCCAAAATAGGACTGAATATGTGTTTTGGGATGCAATTCATCCTACCGAAGCTTTGAACCAATTCACTGCAAGAAGATCGTACAATGCCTTTCTTCCATCTGATGCTTATCCAACCGATATCAGTCATTTAATCAGTTAACATGCAGATCTAAGTCAAGGAAGATAATATTCCATAAATAATTTATAGAAATAATGTGGTCTTGGTCACTTTGTTACGATGATAAAATTATGTAAAACAGCAGTCTAATAATACGACTTCTTGACATAAAAAAAAAAAAAAAA | |||||||||
gi|73880526|gb|DT483264.1|DT483264 WS02522.B21_B21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02522_B21 3', mRNA sequence GGGATCGCCAGATGGGATCTC EST sequence (targeted fragment marked with yellow): TTGCCAGGTAGAACTGACAATGAAATCAAGAACTATTGGAGAACTAGAGTGCAGAAACAAGCAAGGCACCTTAAGATAGATGCCAATAGCACAGCATTTCAGAATATAATTAGGTGGTTTTGGATGCCAAGATTGCTTCAAAAGATAGGAGGATCGTCAACATCTTCATCAGCCATGCCATCCCAAAGACCAGCAGTAGTTTCTCAGCCGAACCTCAATTATGCTCCTCAGTTTTCAACGTTCCCGCCAGCACTCCCCCCACTAGTACAGCAGCAAGAAGCTCCTCTTGATATGAGTGTGACAATGCATTATTTGGAGCCTCATGAACAAACCTCAGACTCAGAGCTTGGCACAAGTTCATGCATTTCTTCAGCAGAATCAATGAATGTCTCACAAATGTCTCAATTATCAGAATACCCTACAAGTCCCTTTCAAGCCATAGGCAACAACAGCAGTGAGTACAGCACCTTGGCGAAGGGCTGCTATTATGTTGACAGCAATTGCTATGACATGGAAGCCATCAACCTAGCAACGATGCCAGTGCCTGGAGAACTTGGGATCTCAGCTGGCGATCGCCACATGGAAGATGGTGATTGGGGTGCATACGATTTCGGAGATACTATGTGGAACATGGATGAATTATGGCAATTTAGGAACTTGCAAGGAAAGGAAAATTAAGGTCTTGTTTTTGGAATAACCCACAAATACTTAGTCACGAAAGCGACAAATTTATATTTCTTGGATTAGTTGTGTAATTGTGTGATAAGCCATTGTTAATTTTTGTACCAAATTTTAAACAGTAACTGTGGATTTTGATCCTGTGCCAACATTTATCAATTGTCAAGATATTTCATAAAGGAAAAAAAAAAAAAAAAAA | |||||||||