| mature miRNA: GGGGAGGAGAATAGTTCCCTT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73869684|gb|DT472422.1|DT472422 WS01226.BR.1_J04 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01226_J04 5', mRNA sequence GGGGAGGAGAATAGTTCCCTT EST sequence (targeted fragment marked with yellow): TCTCCTACAAATCACAACACAAGAAAGTTCTCGAATCCTTCACTGATGTCACTGAAATAGACGCCGTCATGGAACAAGTCGACGAAGGGGACCTTTTCTCCTCCTCCTCCTCCTCCGTCCACCATCCCGTCCCCAACCTCCTCATCAACCTGGACACGGGGTCTGGAGTGAGTGATATGACGGCAGAAGAGAAGAGAGAGAAGCAGAAGAAAGAGGAGGCGTTGCATGCTAGTAGTCTTCGAGTTCCTCGCAGGCCGCCGTGGAATGCTGGAATGTCGGTGGAAGAGCTAGATGCTAATGAAAAGCAAGCTTTTTTAACCTGGCGGCGGAGTCTTGCTAGCCTTGAGGAGAATGAGAACCTTGTTCTTACTCCATTTGAGAAGAACCTGGATATATGGAGACAGCTTTGGCGAGTGCTTGAACGCAGTGATTTGCTGGTAATGGTTGTTGACGCTCGAGACCCCTTGTTCTACCGCTGCCCTGATCTTGAGGCATATGCACGGGAGATTGATGAACACAAAAGGACCCTACTCCTTGTAAACAAGGCTGATCTTTTACCTTTTTCAGTCAGGCAGAAATGGGCAGATTATTTTCGCCATCTTGGGATTCTGTTTCTATTCTGGTCAGCCAAGGCTGCTACTGCAG | |||||||||
gi|73882363|gb|DT485101.1|DT485101 WS02527.B21_E17 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02527_E17 3', mRNA sequence GGGGAGGAGAATAGTTCCCTT EST sequence (targeted fragment marked with yellow): GTATTCTCGGCTGGAGGTTTCAGTCGGCTGAGAGGGGGTAAAGTGAGGGGGACAACCGGCTGGCTTGTTTTTGACAGAGGGCCAGGGGGCCACGGCCGGCCTCTGGTTCTGGGAGCGCCGAGAGAGGGAGGCCGTGGAGGCCGGTGTGCAGGGGAGGTTAGTCTGTGGGCGGCTGAAGAGGGAAGACAAAATGGCCAAGGGGAGAAGGTGGCCGAGAGGGACAGGGGAGGCTTGCGGCTGTTTTCGTGCTCCCTGATGCTCTTTTAGCCAAGGGAAGGGCCAAGCTCTGGCTGGTTTCGGGAGAAGGAAAATGAGGAGAGGCAGGGGGTTTTGCCGTGGCTTTGGTTCTCTTTGTTTTTAGCCAAGGGAGGGGGCAGCCTTGTGAGGGAGAAGAAGATGGGGAGTGGGTGGTCGCCTGCTTGGAGAGGGAGAGTGGCGGCTCAAACAGGGAAAGAGAGCTTCTCTGTAGGGAAATGGGGAGCCGACTACAATAGCAGAGAGGGGTTCTGGTTTCTCCAAGGGAGGGGCGGCCGAGAGCTGGAATCAGTTTAGGTTTAGGGTTTTTTAGTTTTTGTTCCCCAAAATTGTCTCCGCCTCCATGCCTGTAAAATTTTTCTCTCCTCTCCCCCTAAGTGAATTTTTCTCCGCCCCTCTTTTTTTTCACTGTAGCATGTTATTTATAGGAGAAGTTTTGCTAGGTCTTCAAACTAGTCCCTCAACTTTTTCTTTTCTTTTCTTATCCTTTTTTTTTAGTAAATTTTAATATGTTTTAAAAAAAAAAAAAAAAAA | |||||||||
gi|73882700|gb|DT485438.1|DT485438 WS02528.B21_D13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_D13 3', mRNA sequence GGGGAGGAGAATAGTTCCCTT EST sequence (targeted fragment marked with yellow): GAACAAGTCGACGAAGGGGACCTTTTCTCCTCCTCCTCCTCCTCCGTCCACCATCCCGTCCCCAACCTCCTCATCAACCTGGACACGGGGTCTGGAGTGAGTGATATGACGGCAGAAGAGAAGAGAGAGAAGCAGAAGAAAGAGGAGGCGTTGCATGCTAGTAGTCTTCGAGTTCCTCGCAGGCCGCCGTGGAATGCTGGAATGTCGGTGGAAGAGCTAGATGCTAATGAAAAGCAAGCTTTTTTAACCTGGCGGCGGAGTCTTGCTAGCCTTGAGGAGAATGAGAACCTTGTTCTTACTCCATTTGAGAAGAACCTGGATATATGGAGACAGCTTTGGCGAGTGCTTGAACGCAGTGATTTGCTGGTAATGGTTGTTGACGCTCGAGACCCCTTGTTCTACCGCTGCCCTGATCTTGAGGCATATGCACGGGAGATTGATGAACACAAAAGGACCCTACTCCTTGTAAACAAGGCTGATCTTTTACCTTTTTCAGTCAGGCAGAAATGGGCAGATTATTTTCGCCATCTTGGGATTCTGTTTCTATTCTGGTCAGCCAAGGCTGCTACTGCAG | |||||||||