| mature miRNA: GGTGTTTGGTTGATGAGAAAG species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|60711734|gb|DN501544.1|DN501544 V003D06.5pR Populus male catkins cDNA library Populus trichocarpa cDNA clone V003D06 5', mRNA GGTGTTTGGTTGATGAGAAAG EST sequence (targeted fragment marked with yellow): AGAGCATTTGTTTCGTTTTACTAAAGAAGAAGAAGAGAAGCAGCTCTCTGTAGTATTGGTTGGCTCTTCTTCACAATTTTCAGAGCCAAATCTCTTGCAATTCTCCTCTCTTTCTCGCTAACCAAACATGGGATTTTGAATGAGATTGGGGAGAGCTGGATAAATGTTGAGGATCTGTAACTTTTAAGAAGACAGATTTATAGGCACATTTGTAGTGATTTGAAAGTGTTTTTTTCACAAGGAAGGAGTTCCACGCTGGATTCTGATTTTGAAGATTGGCTTCGGTTGATTGAGTTTTATAGAGAGAAGACACATTGGGAAAGATATAAGAAGTTTCAGAGGGGATTTGGAGGATTTCTTGACAGTGCACTGTTAGAGGATACAATTTAAATCAGATTTCTTGATATACAGAGATTGGAATCTGACATGAAAAGTCCTTTGAAATGTCATAAGAGTCGTTTCGTCAAAATCTGAATGATATCTGTTT | |||||||||
gi|24058409|gb|BU867762.1|BU867762 M104A05 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence GGTGTTTGGTTGATGAGAAAG EST sequence (targeted fragment marked with yellow): GAGTTCCCCTCCTCCTCCTACTGTCTCTCTGTCGGTCTTTCACCATGCCGCTACCAGCAGCAGCAGCAGCAGCGTTACACTCTTCTTTGTGTTTTTCTTCTCCGAAGCAGACACCCCAACCCTCAATTTCTCAGCAACCGAACATCCAGTTATCGGTAAAGTCCAAAAGCCTCCTTCACAAGCACCCACTGTACACACCAGCCCACACAAATCTCTCCTTTGAAATCAAAGAAAAGATTCTGTGTCTTGAAATCATGGGAGTTGACTCTGGCAAAGCATTATCCCAAAACCCTTCTCTCCACACCGCCTCTCTAGACTCCATTCAGTCCATAATCTTCTTTCTCCAATCCAAAGGAATCCACCAAAAGGACTTGCCTAGGATATTTGGCATGTGTCCAAAAGTTCTCACTTCTAACATCAGAACTGACCTTAAACCTGTTTTCAACTTCCTATCCCAAGACTTAAAAGTCCCAGACAATAACTTCAGAAAGGCCATCAACAAGTGCCCAAGATTGCTAGTTTCTAGCGTGAGAGACCAGCTCAAACCATGCTTGTTTTATCTTCAACGGCTTGGGTTTGAGGATTCGGAAGCCTTGGCTTATCAAGA | |||||||||
gi|24063642|gb|BU872118.1|BU872118 Q039D09 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence GGTGTTTGGTTGATGAGAAAG EST sequence (targeted fragment marked with yellow): TTCGCTACGCTTTTGATGACTCGAATCTGTTGGAGAAGGAGTCACGATCTCGCGGTGCATACTTGCGAGTGCACTTTAAGAACACTCTTGAAACCGCTGCTGCTCTTGCTGGAATGAAGCTACAGAAGGCGTACGCTTACCTCGCCAACGATCAAGACATGAAGCAGTGCATTCCTTTCACGCGATTCAATGGTGGTGTTGGCCGAACACATCAGGCAAAGGAGTTCAAGACTACACAGGGTCGATGGCCTATCAAGTCTGTAAAGTTCATCCTGAACTTGTTGAATAACGCAGAGGCAAATGCAGAGGGAAAGGGACTTGAGACTGAAGAGCTCGTCATCAAGGACATTGTCGTCAACCAGGCACCAAAGACACACCGACGAACTTACCGAGCTCATGGTAGAATCAACCCATACAAGGGTCACCCTTGCCACATTGAGGTCCACCTGACCGAGCCCGCCGCACAAGTCGCAAAGGCAGACAGCTCTGCACTTCAGCCCCGTCTTAACAAGCGACAACTCGCCATCAAGCGTGAATCGACTGCTCGGGCTGCCATCACCGCCGCATAATGACCTCTTTGATTGCACACAGTTGAAAGATTCATGCGCTTCATCATTGTAAATTACTAGGCTGGGCAGCAACAGATTTCAAGTCATTTCTAATAGAATTGA | |||||||||
gi|52494299|gb|CV241324.1|CV241324 WS02511.B21_N23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02511_N23 3', mRNA sequence GGTGTTTGGTTGATGAGAAAG EST sequence (targeted fragment marked with yellow): GCTTTCTCAGTAACCAAACAAAGGTACAAAATTTGATTTCTTTTTGCGGAGATGAGTTCCAAGCCATTCCAAGCTTCAAAGATATATAGGGATCTTCTCAAATCTGTCAACAAACACATAGGCAAAGAAGGGTATAAGAATCATTTTGGAGACTATATAACGCGAGAGTTTAGAAAGAACTGCAATGTTTTAGACCAATTTTCTGTTCAGCAAAAACTTAAGCTTGCTCGTGATTACACTTTCTTACTTAACAGCGTGCAGCATCCCAAGGAGTTGCTGTTTTCTTACAACATTGCTGTGGATAGATCGGATGAAATGAAAAAACCCCTCCGAAAATCAGCTGGAAGTGTAGGTTTTCAGCTTCCGGAGGTTTATCAGCCTTGATGGTCGGTTGGTTTTGAATAAATTCTTGTTTCAGGAAGAAAATTAGTTCAAAAACCATTGATTGAGGCAGCATTCGACTTGTTTCCTTGTTTGTTTGGAAAATTCCTTGTTTGATGCTTGCAAAATACCAAGGGCTACGTCTCCCTTTTTTGAATACTTTTATATTTGAGCTAATTACTTGTCTATCTTAATGAATTGTCAACAAAATCATTAAGGTTCCCTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73876312|gb|DT479050.1|DT479050 WS02524.BR_J22 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02524_J22 5', mRNA sequence GGTGTTTGGTTGATGAGAAAG EST sequence (targeted fragment marked with yellow): GGAAACATGGTACCGTAACTTGGTCTTGAGAGAGAGAGAAACCCCCAAACTCTGGGTTTTCTCATCAACCAAACAGAAAATTCATCTTCCATAATCGACTGTCTGACCCACCTGGATCCTCAGTTTGAATCCAAAATTCATGGATTTGGAACATAGTCCTGATGTTCCAAACGAGGATCTAAATAATTCTACAGATGGCAATCCTCAGCATGGTAGTGATGGCACAATCGGTGGAAGTTCTATAGAAGCAACATCTCAACCTGAACAAAGTGATAAAATGACTCCAAATTCCACTGGGGGTTTTGAGTTAACTGTAGTCGAACCATATGTGGGTCAAGAGTTTGAATCGGAAGCAGCTGCACTTGAGTTCTATTGCTCTTATGCCACGCGTACAGGTTTTGTTACTCGAATGAGAGATCACAATTGCTCTCAGCGTGATGGATCTATCATTTCAAGAACACTAGTTTGTAACAGAGAGGGTTTTCGAAAGTCCGCTGATAAGCCTAGAATGCCATGGTCAAGAAAGCCTCGTGCTGTCACTAGGGTGGGTTGCAGAGCAAGGGTTTCATTTAGAAAGCAGAGTAATGGGGCTTGGGTTATTAGAAGTTTAGTAAAGGAGCACACTCATCCATTGGCATTGCCCGAGAACCAATCTCCAAAGGCTAGGGGAAATCCCAAGATCTATCAAGTTCCGGCTGATGACAAGAGAGTCCATGAACTGATGCGAGAGCTGATGGTGGAGAAAAAAAGGAATGCTTCCCTCACAGAATTTATACAGCTTTTATTCAATCACATCGAGGAGCACACGCAAGGCTTGTCAGAAAAGATCCAGTGCATAGTAGAAAAGGTGAACAAGATGGAGTCAGAAGGAAAAAGTCAGGATCTGAGATAATCATGT | |||||||||
gi|24073796|gb|BU882272.1|BU882272 UM74TH02 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence GGTGTTTGGTTGATGAGAAAG EST sequence (targeted fragment marked with yellow): GGGGATTCCCAATCACAACTCCCTTCCAAACCCCACACTCTTTTCTTTCTCTCTGATTTTCTGAGCAACCAAACAACAACAATGTTTCGTCTAAGCAATAACTTGGTAGGAATCCTGAACTTCATTACATTCCTGCTCTCAATCCCCATCCTGTGGGCAGGGATCTGGTTAAGAAACAAAGGAGCATCCGAATGTGAGAAATTCCTCGACACTCCAGTTATAGTTCTTGGTGTCTTCCTCTTAGTTGTCTCACTAGCCGGTCTAATTGGCGCGTGTTGTGGCGTTTCATGGCTCCTCTGGGTTTACCTCGTAGTCATGTTTCTCCTCATTGTCGTACTCTTCTGCTTCACGATTTTAACTTTTGTGGTGACCAACAAAGGTGCTGGTAAAGTTTTGTCTGATAAAGGGTATAAAGAGTATAGGCTGGGTGATTATTCGAATTGGTTGCAGAAGAGAGTGACCAGTGGGAAGAATTGGAGCAAGATTAACAGTTGCTTGATCGATGCTAAGATTTGTACTGATCTTCAACAGAGATATTTGAATGATTCTCTCACCGTTCTCTATACTCGCCATTTATCTGCTCTTCAGGCTGGCTGCTGTAAGCCACCGGATACCTGTGGCTTAAATATCAAAATCCGACTACTGG | |||||||||
gi|73878887|gb|DT481625.1|DT481625 WS02532.BR_G22 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02532_G22 5', mRNA sequence GGTGTTTGGTTGATGAGAAAG EST sequence (targeted fragment marked with yellow): GCTGAAGAAGGATACGAAGAATAGACCATCACGATAGCTTCCTTCACTAGCCTATAAATTCGTACTCCAAGGCTCATATATCTCACCAACCAGACACCATTAGCCCTCTCTGAATCTCAAAAAGGTCCCCTAGTTTCACGATCTTTGCAACCATCACCATGTTTTCTCCAACGAACATGCCTCAATCAGTATCCACATTATTCTCTGCTTATGCCGCTTTTGCAGGATCAGTGATGCTTATCCGTTCCATGGCAAACGAACTAATCCCTTATGAGCTTCGCTCTTATTTATCCACTGCTATTCGCTACCTCTTCACTCCTCTCTCCCCTAACATCACCCTTGTCATTGATGAGCATTGTGGCATGTCTCGCAACCAAGTTTATGATGCAGCAGAAATCTATCTCAAAACCAAAATTAGCCCATCAACAGAGAGACTCAAAATCGGCAAGACACCAAGACAAAGGACCTTCTCTGTCGCAATCGAAAAAGGTGAGGTAGTTACAGATGTGTACGAGAATATCAAGTTGAAGTGGGCTTTTGTGTGTACAGAACCACAAAACAACAGTCACTCCGGAGAAAAAAAGCGTTTTGAATTGTCCTTTAACAAGAAGTACAAAGAGAAAGTTATGGATCGTTACTTGCCTCATGTTTTGAAGAGGGGTAAAGAGATAAAAGATGAAGAGAAGGTTGTTAAGCTTTATAATCGTGAGTGTCCTTTCAATGATGAGGATGGGGGTGATCATGGTGGCATGTGGGGGTCCATAAATCTTGAACATCCCTCTACTTTTGATACTTTAGCTTTGGATCCAGAGTTGAAGAAGATGATAGTTGATGATTTGAAGAGGTTTTTGG | |||||||||
gi|60704693|gb|DN494503.1|DN494503 M101G03.5pR Populus female catkins cDNA library Populus trichocarpa cDNA clone M101G03 5', mR GGTGTTTGGTTGATGAGAAAG EST sequence (targeted fragment marked with yellow): GAAGGATAAGAGAAAGTCACAGAATCCAATCTAGAGGGTGCGGCTCTCTATCTGTGTTGGCCAAGAGGTATTTAGCTAGCTTGTAGCTGTAGTAGATTTCTACTTGAAATGGAGAGATTAATGCAGGTGCCTTATGAAGCAACGGTGAAGGTGATGTTAGCATCTCTGGAAAGAAATTTGCTACCAGATGCGGTGATCAGGAGGCTCACTCGCATGCTCTTGGCAGACCGTCTTCGTTCTTGCTACAAGACATCCTCTGAACTCCAGCTAGCTGACCTTCTCCAATTCGTTCATTCTCTAAAAGAAATGCCTATAGCTATCAAGACTGATAAGCCAAAAACTCAACATTATGAATTACCAACCTCTTTCTTTAAGCTGGTCCTCGGGAAAAATCTCAAATACAGCTGTTGTTATTTTTCTGATAAATCGAACACCTTGGAAGATGCTGAGAAAGCAATGTTGGAGCTGTACTGCGAAAGGTCACAGTTAAAAGATGGACACACTGTCCTTGACGTTGGATGTGGCTGGGGGTCGCTCTCTTTATACATTGCCCAAAAGTACAGTAACTGTAAAATTACTGGGATTTGCAATTCAACAACACAGAAAGTACACATTGATGAGCAGTGCCGGGATCTTCAGCTGCACAATGTGGAGATCATTGTTGCAGACATTAACACATTTGAAATGCAGGCATCCT | |||||||||
gi|24069938|gb|BU878414.1|BU878414 V046H12 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence GGTGTTTGGTTGATGAGAAAG EST sequence (targeted fragment marked with yellow): ATTCCTACACTTTCTCAGTAACCAAACAAAGGTACAAAATTTGATTTCTTTTTGCGGAGATGAGTTCCAAGACATTACAAGCTTCAAAGATATATAGGGATCTTCTCAAATCTGTCAACAAACACATAGGCAAAGAAGGGTATAAGAATCATTTTGGAGACTATATAACGCGAGAGTTTAGAAAGAACTGCAATGTTTTAGACCAATCTTCTGTTCAGCAAAAACTTAAGCTTGCTCGTGATTACACTTTCTTACTTAACAGCGTGCAGCATCACAAGGAGTTGCTGTTCTCTTACAACATTGCTGTGGATAGATCGGATGAAATGAAAAAAACACTACGAAAATCAGCTGGAAGTGTAGGTCTTCAGCTTCCGGAGGTTTATCAGCCTTGATGGTCGGTTGGTTTTGAATAAATTCTTGTTTCAGGAAGAAAATTAGCTCAAAAAACATTGATTGAGGCAGCATTCGACTTGCTTCCTTGTTTGTTTGGAAAATTCCTTGTTTGATGCTTGCAAAATACCAATGGCTA | |||||||||
gi|52495776|gb|CV242801.1|CV242801 WS02516.B21.1_B04 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02516_B04 3', mRNA sequence GGTGTTTGGTTGATGAGAAAG EST sequence (targeted fragment marked with yellow): CAAGATCTTTCACTTTCTCATCAACCAAACACCCAAAACCTCTCTCAAAAATCCTTCCTTTTCACCATTTTCACACAAATTCCATCTCACCAACTAAAACCCATCTTTATGCTTCTTTTTTCTGCACTCTTATACACCTTTATTTGACTTGTGGCAGACTTTCCAAAGCAACAGACACTTTCTATGACATGATAAGAACTCACCATATTGTTCCCACTCTGCCCTTATGGAACCGCCTTATTTACCAGTTCAATGCCACTGGCTTGGTTTCTCAGAATTGCTATGCTAATCTCTTAGTTCATGGCACCTGAAGACATAGTGCTGACAGATGAAGAGAGAGAGAGGCATTAACACTACCAGTTTGCACTTGAGAAAGCAAACAAAGAAGTCAGCGCATCCTTCTGAAATGGGAACATATTCGTTCTATGCGTGGGTGATGAATGAGCTACACCATCATGCTATGAATGGACGATGGGTGCTTTGCTAGATGATTAGAGCAACTGGGTGGATCTCTCAGTGCAGCTTCCATCTGACAAAGGATGATTGTATTCTTACATGTTAATATTAGCCTGAGCAGCATGCCTAACTGATAGCATGATGATGTCAAAGGTAAAAGAAACAGAAACATCTGTTGTTCAATTTGGTTTCTGTGTGATTCTGAAAGTGGGATGTGATAGTGCATCTGAGATATGATACTTCAGTGCCATAATCTTATATAATTAACAAAAAAAAAAAAAAAAAA | |||||||||
gi|24058486|gb|BU867839.1|BU867839 M105A05 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence GGTGTTTGGTTGATGAGAAAG EST sequence (targeted fragment marked with yellow): GGCTTTTTCTCTAACCAAACACCTCCTCCATTAGGGTTAGTAAGGTGCTGAGCTGAACAGAACTTTCTCCGACTCAAGATGGAGGGAAAAGCGAATTTGGAAGCGGCGATAGAACAACTGCAGAATGTCGAAAAGCAGATGAGGCTTGCCGGAGACGTCGCCGGCACTAAGAAAGCCGTTACCGAAATTCTCCAACTCTGCCTCGAAGCTAAAGATTGGAAATCTCTAAATGACCAAATTGTCCTTCTCTCTAAAAAACGTGGTCAACTCAAACAGGCTGTAACTGCAATGGTCCAGCAAGCAATGCAGTACATTGACGAGACGCCGGATCTTGACACTCGTGTAGAACTTATTAAAACACTTAACAGTGTGTCTGCTGGCAAGATATATGTTGAAATTGAGAGAGCAAGGTTGATTAGAAAACTAGGTAAGATCAAGGAAGAACAAGGGCTTACAGCTGAAGCTGCAGATCTGATGCAAGAAGTTGCGGTGGAAACTTTTGGTGCTATGGCAAAAACTGAGAAAATTGCGTTTATTCTTGAGCAAGTTCGTCTATGCCTTGACCGCCAGGATTATGTTCGTGCACAAATTCTCTCAAGGAAGATTAGTACAAGGGTTTTTGATGCTGATACTTCTAAGTCGAA | |||||||||