| mature miRNA: GTCTGGCACGCTTGCCAAAC species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73870800|gb|DT473538.1|DT473538 WS01229.BR_P04 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01229_P04 5', mRNA sequence GTCTGGCACGCTTGCCAAAC EST sequence (targeted fragment marked with yellow): GAACTTAAAGCTTCCAGAGAGTTTGGAGAGCGTGCCTGAGCTCAACAATGGCAGGTAGAGGTGAAACAGTGAGCAACAAGCATGTGTTATTCAAGAACTATGTGTCTGGTTTCCCCAAAGAATCAGACATGTATGTTGCCACTACTACCACTGAACTCAAAGTACCAGATGGTTGTAATAATGGGGTTCTTGTTAAGAATCTCTATCTTTCTTGTGACCCGTATATGATAATTTTGATGAAGAAGTCCATAGACCAAAGGACTTTCACTTCGTATACCCCAGGCTCTCCATTACGTGGGTATGGAGTGGCGAAAGTGTTGGATTCTAGGCACCCGGGCTTTAAAGAAGGCGACTTTGTTTGGGGGACAGTAGGCTGGGAAGAGTACAGCCTTATCACTTCATTCCAACCCTTCTTTAAAATTCAGGATACTGATGTGCCCCTTTCATACTATACAGGAATTCTTGGCATGCCTGGTATGACTGCTTATTTTGGTTTCTATCAAGTTTGTTCTCCAAAGAAAGGGGAGCACGTCTACATTTCAGCAGCTTCTGGTGCTGTTGGTCAGCTTGTTGGGCAATTTGCAAAGTTAATGGGTTGTTATGTTGTTGGAAGTGCCGGAAGTAAAGAAAAGGTTGATTTATTGAAGAACAAATTTGGGTTTGACGAAGCTTTTAATTACAAAGAGGAGCCTGACTTAAATGCTGCTCTGGGAAGATACTTCCCTGAAGGCATTGACATATATTTTGAAAATGTTGGGGGCAAGATGCTTGACGCCGTGCTTCCAAACATGAGATTTCGTGGCCGCATTGCGGTATGTGGAATGATCTCCCAATACAATCTTGACAAACCTGAAGGTGTATTTAATTTAATGACTGTCGTTTACA | |||||||||
gi|24071589|gb|BU880065.1|BU880065 UM41TA06 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence GTCTGGCACGCTTGCCAAAC EST sequence (targeted fragment marked with yellow): GGAACCCACAATATTTTTTTAAAAAACTTTTCTAAGCAAAGTTATTCCAAAAATGCAAAAATTAACTTCATTAATTTCGAAGTAGTGATTTTTACGAATATTCTGTATAATTGGTTTAATTTGCGTATCACTGCTCCTACATGGCCCACCAACCCATCCGCCTTCACTACTTTACCAAGAAAGATAAACCAACAGTTGTAACTTAAAGCTTCCAGAGAGTTTGGAGAGCGTGCCTGAGCTCAACAATGGCAGGTAGAGGTGAAACAGTGAGCAACAAGCATGTGTTATTCAAGAACTATGTGTCTGGTTTCCCCAAAGAATCAGACATGTATGTTGCCACTACTACCACTGAACTCAAAGTACCAGATGGTTGTAATAATGGGGTTCTTGTTAAGAATCTCTATCTTTCTTGTGACCCGTATATGATAATTTTGATGAAGAAGTCCATAGACCAAAGGACTTTCACTTCGTATACCCCAGGCTCTCCATTACGTGGGTATGGAGTGGCGAAAGTG | |||||||||
gi|73893748|gb|DT496486.1|DT496486 WS01123.BR_I22 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01123_I22 5', mRNA sequence GTCTGGCACGCTTGCCAAAC EST sequence (targeted fragment marked with yellow): GAGAGTTTGGAGAGCGTGCCTGAGCTCAACAATGGCAGGTAGAGGTGAAACAGTGAGCAACAAGCATGTGTTATTCAAGAACTATGTGTCTGGTTTCCCCAAAGAATCAGACATGTATGTTGCCACTACTACCACTGAACTCAAAGTACCAGATGGTTGTAATAATGGGGTTCTTGTTAAGAATCTCTATCTTTCTTGTGACCCGTATATGATAATTTTGATGAAGAAGTCCATAGACCAAAGGACTTTCACTTCGTATACCCCAGGCTCTCCATTACGTGGGTATGGAGTGGCGAAAGTGTTGGATTCTAGGCACCCGGGCTTTAAAGAAGGCGACTTTGTTTGGGGGACAGTAGGCTGGGAAGAGTACAGCCTTATCACTTCATTCCAACCCTTCTTTAAAATTCAGGATACTGATGTGCCCCTTTCATACTATACAGGAATTCTTGGCATGCCTGGTATGACTGCTTATTTTGGTTTCTATCAAGTTTGTTCTCCAAAGAAAGGGGAGCACGTCTACATTTCAGCAGCTTCTGGTGCTGTTGGTCAGCTTGTTGGGCAATTTGCAAAGTTAATGGGTTGTTATGTTGTTGGAAGTGCCGGAAGTAAAGAAAAGGTTGATTTATTGAAGAACAAATTTGGGTTTGACGAAGCTTTTAATTACAAAGAGGAGCCTGACTTAAATGCTGCTCTGGGAAGATACTTCCCTGAAGGCATTGACATATATTTTGAAAATGTTGGGGGCAAGATGCTTGACGCCGTGCTTCCAAACATGAGATTTCGTGGCCGCATTGCGGTATGTGGAATGATCTCCCAATACAATCTTGACAAACCTG | |||||||||