| mature miRNA: TAAAAAGCAATCGCTACCAC species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|52496071|gb|CV243096.1|CV243096 WS02516.B21.1_O06 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02516_O06 3', mRNA sequence TAAAAAGCAATCGCTACCAC EST sequence (targeted fragment marked with yellow): CAGTTCATTTTCTGACCGAGCCCGATGTAATTTTTTAGCAGTTTGCAAACCGTATATTAGGTGCTTTACAAGTTTTATGGCTGTAAGGGAAGCAATTTGTCATCTCTCATTGTTTATACTGTTATGGGTTTCGTTTAATCTTCCACATCTGACTATTCCTTATCAGTCTCAATCGAAATGAATTTTACAAGAGTTGAATACCGAATGTTAAATTGGTATTCTCATGTTACTGATATCACACCTCTGCATGTCTGTTTGTTTGTTAAGGAACTTGTTATGCCTCTTCCACTAATGATGTAAAGAACATCGCTGGAAAGTCAATAGAGTGCGGGGACATCAATCTATCAATGGAGCAGCAAACACTGGGCTCATGTCCAATTTATAAATTAGGATATTCTTCATCCAAACACCTGCTATTCTCTGTAATTGACTTCCATAGAGCCTCGCAAATACTAATGACTTGACCATCTAGCCTAGCCAGCAGTAATCACCTACTTATGCAAGTACCACATAATTCGACTCCTGAGCTAACTTGGACACTAGTCAATTTTTGTATGTCTTTCTGTTGTGTGTTTTGTGATGCCTAGTAAGTGTATTGATGATAAATTTGTGTTGAAGCTCTTGAACAATTTCATTGGTCCACTCCATTTTGTATTTCAAGAGGCATAGCTTGTAAGAATCTTCTAAGGCTACTAGATGTATCATGTAACCTATTGGTGTCCTGTCCTGTGGTGCAAACCCTTGCATAGGAGGGGAGATGGAGTGAGGTAATGTTTGAGATTGAGATTGTGGCCGTGATTGTTTTTTAAAGTGATTTTTGATTGGAAATGCATCAAAATAATGCCATCAAAATGATCCAAAACCAAAAAAAAAAAAAAAAAA | |||||||||
gi|52382433|gb|CV229698.1|CV229698 WS01914.B21_C12 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01914_C12 3', mRNA sequence TAAAAAGCAATCGCTACCAC EST sequence (targeted fragment marked with yellow): GCAGCAGGGAGAGCTGCCTGCGCACAGCTACAGGGGATGGCAAAGCAATCTGCAAACTCTAACAAAGGCGAACCAGTTCTAAAGGTTTTAAGTTTGAAATGCCTTTTGTTTTCTTGGTTGGTTGTAATAAATGACAGTAGTGCAATAGCAATTAAAGGGGTGTTTGAGAATGTGGTTCCGATTGCTTTTCAAAGTGTTTTTTCTTAGAAATGCATCAAAATAATATATTTTTTTTATTTTTTAAAATTTATTTTTGACATCAACACATTAAAACAATTCGAAAACACAAGCAAAATAAAATATTTGAATTTTCAGAAACCTCTTTTTGAGCTGCACTCACAAACAGGAGCTAAATTTCAAAAACCCTTAAGAGGGCCATTTAGGAATCTAATGTTACCTCTTAAAATGCCACTGTCTTCTAATTCATTGCCAAAATGCACTTGCACTTTGATATGGAATCTTGATATGGGCTCTGAACCCATTTGATATCATTTTATCAAGAGAACAAAAATAACATGAAAGCCTGACCCTCTTCTTGGTTGGTGATATTGATGCAGTGGCAGATGAGTTGAAGTTGAAACCTGTCCTTAATGCAGCTGCAGTTCTTATTGTAAGTAAGTCAGATCTAACTTGTTAGGATTGAAGGGAGATTTTTGTGAATGAGTTCTTATAAGTTTGGACTTTTACTTGTGTAGACGGAATTTTGTTTTCGTGGCATGCATCATTCATTTATACAAAAAAAAAAAAAAAAAA | |||||||||
gi|52497980|gb|CV245005.1|CV245005 WS0256.B21_D18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0256_D18 3', mRNA sequence TAAAAAGCAATCGCTACCAC EST sequence (targeted fragment marked with yellow): CCGTCCTTAAATGATATATGCCAAGCTGTAGCCTTCATTCATGAAAATGTATCATCAGGACGAACTACATATGTTCATTGCAAAGCAGGACGGGGACGCAGCACAACAATTGTTATATGCTACCTGGTGCACCACATGCAGATGACACCTAATGCTGCATATAATTATGTGAGGTCAATCCGACCAAGAGTGCTTTTAGCATTTGCGCAATGGCAGGCTGTTCAGGAATATTATTATTTAAAGGTGGACCCTAGCGATCACAACTTCAAATTGGCTGATTTAGTTTTGAGAACTCCAAGGCCAGCACTTTTGCAGGGTATAGTGCCATTTGATGATGGCTCTGTAGTTGTTGTAACAGAAGCAGATCTTGATGGATATAATCCAAGTATTGAATTTGGGCCTGTGGGAAGTGAGATATGGGCTGACCTAAGTGTTGTTTGCCGTGTTCGAGTTGCTGGTCAGGCAGCTTTGGCAAGAATATCCTGCCTGTGGCTCCGCTGCCAGGCTCACCAAAAGATTGTTGGGGAGCAGTTAAACAGGAAGAACAGCTGCTCAATCAGGGCGGATCACTTGGGAGCTATCAGTGTCGACATTCATGTGTATTGAATAGCTTTGGTAAAATTGCATGTTAGTTTTACAAGTTTTTTTTTTTTTTTTAATTTTTGAAAGTAATAATGTTCAACTAGGCAGGAAAGAACTTCGGTTCCTGGCACCCCTTGTACATCGAGTTGTTTTGTCTCGAGTCAATGCAAGAAACATGAGCATTATGGTCAATATATGCATTTGGTATTATGATAGTGATTGCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA | |||||||||
gi|73884626|gb|DT487364.1|DT487364 WS02533.B21_H23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02533_H23 3', mRNA sequence TAAAAAGCAATCGCTACCAC EST sequence (targeted fragment marked with yellow): GGTCACAACTCGGTCACTAACCCAACTCGCGTCGAGCTCCATGAGTCAGTCCACCACAGATTCAGAACCCAATCCACAAAACGAAGAAAAGAAAGCAGGGAACTCAGATGAGGTGTTGGTGCAGTATGTGGTGTTAAGGAGAGACCTAATAGACACGTGGCCGATGGGGAGTGTGGTGACACAGGGATGCCATGCCTCTGTTTCGGCCATTTGGTCACACAAGGAGGATCCTCATACTCTTCAGTATTGTAGCCCTGAAAATATCGATTCTATGCATAAGGTTACTCTGGAGGTGAAAGGAGAACCTCAAATCTTGAACTTGTCAGAGAAGCTCAAAGCTGGAGGTATTGCTCATAAACTCTGGATTGAACAGCCAGAAAACATTCCTACTTGTCTTGCTACGAAGCCTTATCCTAAATCTGTGGTGGCATTGTTTTTTAAAAAGTTGAAACTTTGCAAGTGATGTATTTTGGATATTATGATTCATAAACAATTTTGCATTTTCTTTCCTGCTTGCAAAAAAAAAAAAAAAAAA | |||||||||
gi|24064177|gb|BU872653.1|BU872653 Q045D05 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence TAAAAAGCAATCGCTACCAC EST sequence (targeted fragment marked with yellow): GAATGCGTTCAGCTATCAACTCTCTATTGAAGGATGATGGGATTCTGGTGGTCCCTACAACTGCTTATCTTCCTCCAAAACTTGGTGGGAAGGAGATTTTATCAGAAGAATATCAGAGCTCTTCATTTGGTCTTTTGAGTATTGCTAGCCTATCAGGTTGCTGTCAGGTCACTGTACCATTAGGATATTATAGCAAGTGTCCTGTCTCAGTGTCCTTGATAGCCAGACATGGCAGTGATCGCTTTTTACTAGATACAGTGCAGACCATGTATAAAACTTTGCAAGAACAAGCTGAGACATATGTGAATTCCAAATCGAGTAACACAGACAGCCGGGAAAATTCTGCTGAGATGGCTAAAGAAAAGGGCAATCAAGCATTTAAGGAGCAGCAGTGGCAGAAGGCAATTAGCTATTATAATGAAGCTATCAAACTTAATGACAAGAATGCAACGTATTACAGTAACAGAGCTGCAGCATATCTTGAACTGGGAAGTTTCCAACATGCTGAAGCAGATTGTTCCAATGCTATCAACCTTGATAAAAAGAATGTTAAGGCATATTTGCGAAGAGGGACAGCAAGAGAGATGCTTGGTTACTATAAGGATGCAATTGAAGATTTCAAATATGCCCTGGTGCTTGAGCCAACTAATAAAAGAGCGTCCCTTTCTGCTGAA | |||||||||
gi|73888501|gb|DT491239.1|DT491239 WS02547.C21_C23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02547_C23 3', mRNA sequence TAAAAAGCAATCGCTACCAC EST sequence (targeted fragment marked with yellow): CAATCAAGCAACAGAAGCTGGGTTGAAGTGGTTTGAGCTGGATTGCATATCTTCAGACAAGGAATGCGAAGGGAAACCTAAGATCAATTATGTCACGGTCTTTGAGCGTCCAGGGTTAGATGAATTCCTAAAACAACTTAGTGAATTTGCAGAGCTTGTGCTATTTACCGCTGGACTTGAAGGTTATGCCAGACCACTTGTTGACAGAATAGATACAGAAAATCGATTTAGTCTACGTCTTTATCGGCCTTCAACATCTAGCACGGAGTATCGGGAGCATGTGAAAGATCTCTCCTGCATATCAAAGGATCCATGCCGGATTGTTATTGTTGACAACAATCCATTCAGTTTCTTGTTGCAACCACTAAATGGAATTCCATGCGTTCCATTTTCTGCAGGACAACCGCATGATACACAGCTTCTGGATGTACTTCTTCCACTCCTCAAGCAACTCTCTCAGCAGAAAGATGTGAGACCTGCACTCTATGAAAGATTCCACATGCCTGAATGGTTTCAAAAGCAGGGAATCCCTGCTTCTGGTTGGACGTAGCTGGATAAAAGATCATCTGCAATGAAAGCAGCCCTCCTTTGTACTATCCACAGTTATTTCATTCAAAGGCAGCATCTCATTGTAGGAGCGATGGCTTTTTGTATAGCATCAATGCATTGATGGAAGCTGAAGTAACACAGCTTCAGGAATGGGATTTATCTGCTGCTTTTAGTTGTCAAATAGGTACAACATTACACTCTGATTCTTGTTGTAACTTTTTTTATATGTTCGCACCTTGCAGTCTGCATGATTTGTTTATGTATCTTTCAGACTTTTGTAAATCTGCACCTCATTAATGAAGGTTTGTAGCAAAAAAAAAAAAAAAAAA | |||||||||