| mature miRNA: TAGAGCAAGCAAGGGGTCAA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|52493397|gb|CV240422.1|CV240422 WS0251.B21_F10 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0251_F10 3', mRNA sequence TAGAGCAAGCAAGGGGTCAA EST sequence (targeted fragment marked with yellow): GTCAGCTGGAACTTCAGCACCCATACGTTTTTCGTAGAAAATACGAAGTTTGTGCTCATCATTTTCTTCAAAGAGCTTTTGAGCTCCGGTAGCTGGATACGAAACGTTCAACTTCATCGTAGACGTGTTTCACTGTCCTTCGAATTTAAAGGTTGTTACTTGTTACTCGCATTTCCCATTTCTTTCTTTTATGGCTTGAGTGAAAGGAGTGATGATTTTTGAAATGGAGGCTAGGTACGATATTGTGTGTAGAGTAGTGTAGGAGAGATTGGTGGCATTGATGGGCTAATGTTAATTGTAATGAAGGAGAAGTTTTAGGAGTGAGATCCACCCACTCTTTAAAATTTTCAAGAGCTTTGCCTTTTGCTTGCTCTGCTCCTTCTTTCTGCTTTGAGACTTTCTTTTGGTGTCCCATTTTTTCTCTTTCTTTGTTCTTTGTTCGTGTCTTGTGTGTGCTTTATTTCACGAAGAAGAACCTGATTCTCTAAACACGAGGAAACGAATTACTTTTCTGTTTCTTCTTCTTCTTCTTTTTATTTTTATTATTTTTATTTGGCTTTTCTTGCTTTTTGTCTCGGCTATATTTCTCTCTATCTCTTATCTTCATCTCCATCTTCTCCGAGAGAAACAGAGATCCTCTGCTCTTCAAGATAAAGAGAGACAGAGAGAAGCGGAGAGATATCTGGCTACTAAATTGATTAACTTTCTCTTTCTTTGGAACAAAAACAAAAAACCCAAATGCCATTTTTTCGGTTATTTCAGCCTTGCATTTCGCTTACTAACTAATACACCAAAAAAAAAAAAAAAAAA | |||||||||
gi|52383943|gb|CV230442.1|CV230442 WS01916.B21_J03 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01916_J03 3', mRNA sequence TAGAGCAAGCAAGGGGTCAA EST sequence (targeted fragment marked with yellow): GATTCAGCGGCTAAAAGGTATTGTTTTTCACTGGTTGATGAATTGGTTTTGGTGAAGGGAACAACTGTGGCGATATTCTTGGGAGAGAAACACTATGCGGTGGTTCCTGAGTCTTTCTATTGATGTGTATCGGAAAGTTATCTCATTGAATCTCTATTGTAAAGTTATCCTGTAAATTCCTTTACAAGCCTCGCCTTAAATTCTGAACGTTTTTCGTCTTGTAACTCGATGGGATCCACTTTCTTCGTTGTCGTTCCCTGTTACGTTCGTCAGATTAGCTGAACAGTAGCAAATCCAATATCCTCTCTGCTTTCTTTCTCATTTTGTTTCCTGGGTGAAAAATCTGATTGCTTGTTGTTTATTTCTTGGTCTGGTTATCCCTCCAGTTACGTGTATTAGGTGTCCCTTTGCTGACGATTAATCTAGTTTTCTGTGTTCAATTAATATTGTCCCTTTGTTTGTTCTAAAAAAAAAAAAAAAAAA | |||||||||
gi|73886050|gb|DT488788.1|DT488788 WS02537.B21_G21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02537_G21 3', mRNA sequence TAGAGCAAGCAAGGGGTCAA EST sequence (targeted fragment marked with yellow): AAATGAACTCAGTTGACTTTCTATTTGAGGTTGATGATGATGACCGTCAGTTGCTTTATCTGCACGAGCGAGGGAAAAAGAAACTGATGGAAGGCCACCGAGTTTCCTTCAAAGATGCTCTAGATCCCTCTTCATACTCTGGGAAGATAGTTGAGTGTTCTTGGGATTCAGAGGAACGTGTGTGGGTCTGTATGCGGATCCGGACTGATAAATCAACACCAAATGATTTCAATACCTACAAGAAGGTGATGCGAAGCATCAATGACAATATAACAGAGGATGTGTTGTTGAATGAGATTTATGAGATCGTTTGCCTGCCCATGTATGCTGATAGGATCAGGATTGAGAGTAAAGCTCAGCAGCATGCAAATGCGGTACGTCGTAAGTGATGGACAGAATGGTGAGTAGGCACTATGCTTAAAGTTGCTAGCAGAAGTAGAAGAACCCAATACTGGACCTTTGATGCTTGCTTGCTCTAGGTCTTTGCTGGTTTTACTTGGTTGAGGTTGGGTATGTACTGGAGCTTATCAACTAGAGGGTCACTGTGATGTTATGTAATTAGCTGTAGCTCTAATGGTAACCACCTAGTGGGTGCTGTGCTGGTGAGTTATATGATGCACTTAGTGCACTAGAATAGTTTTCAGCATCAGACCCAAATTATGTCTGTCATAGTTGCCCAGATCAGGAGAATTAGGATACTAGGATCTCCGTGTATATTCTTCTTTTTTTTCTTTTTATGTAGTGATTAATAAGTTTTAGTCATTTTTTATTAGTAGAAACAAGTTCCCGGACATGGTTTTCACCTCATCTCTTGATGTGAATATGTTTTGGAATGTGGCGATGGTTCTCCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|52494128|gb|CV241153.1|CV241153 WS02511.B21_F23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02511_F23 3', mRNA sequence TAGAGCAAGCAAGGGGTCAA EST sequence (targeted fragment marked with yellow): GTGGAAGATGAACTGAACCTTCACCGCCTCTTCGTGAAGATTTTTTTATGGAACAGTTTGTCGGCGATACACAGCCCCACTCCTGTATATATTCATGCATGCATATTCGATCCTTGCTTGTTCTATTCAAATCTCATCTTTCAAATCCCACTCCTTACACACCCAAAATCACCTCACAAATATTCTTCATTAATGGATTGTCACCCGTCTTCTAGTGCAGGGTCGATATTTCTTGAAGATTTAAGCTTCCCTGCTGCCGCACCTTCTCCTTTAATGGACCTGGAGGCTTTCTCCTATGTAAGCCCGACGACTTCAGCTCATCCAGTATCATCATCGGCGACTGCCAACGAGGTGGATGGGGAAGAGGAGATGCCACGTCCTCTTGTGTGCTTACAGGAGAATCCAGTACCGCCTTTTCTATCGAAAACATATGATCTGGTGGATGATCGGATGCTGGACCCAATAATTTCGTGGGGTTCCATTGGGGAGAGTTTCGTGGTGTGGGACCCCGAGGAGTTCGCCAGGCTTGTTCTCCCTCGGAATTTCAAGCACAACAATTTCTCCAGTTTTGTCCGACAACTCAATACTTATGTGGGTATCGTTTTATATAATATAAATACATACATCTATATTTTTAGCAGGCCTCCATTTGCCTGCTGTGCTATACAAAAAAAAAAAAAAAAAA | |||||||||
gi|73886480|gb|DT489218.1|DT489218 WS02538.B21_J20 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02538_J20 3', mRNA sequence TAGAGCAAGCAAGGGGTCAA EST sequence (targeted fragment marked with yellow): TTAGTGGAAGGTCCATCTGTTGAACCTGTGGATCCAGCCACAATTATAGAGGATAATGCTACCTCCCTTGAAACTAAAGCCAAGGATGAGAGTGCCAGAGATAATGGTGAAACAGGATTTTCACTTCAGAGCAGCAAAAAAGGGAAAGCTGAGTAGAGTTTGTGGAATATGAAGGAATGATGAGTTGATTTTGCCAAAAGTATTCACCAAATGCACGCACCACTTCCTTCTTTGATTTTTTTTTTTTTTTCTATTTTCCAGTTGTATGACTAATTACAAAAGCCAGATTCTAAGTTCAGCCTTTCAAAGAGAGAATTCGAAGACTAGAACATAGGGTGGGGGGTTCCGAAACCATTCAGTTTGTTCTTTTGCCTGCTCTATTGTCCTGGATCTCCAACTTCAAATCAACGGGGACTGGAGACTTTTGCTAACAAATTTATATGGGAAGAACCATTGAGGTTATTTTGCAGGGGTGAGGCGACCGTTTGCACATATTCCCTTAGCTGTGTCCGCCTAGCTGGATCATTTTTCTTCGCGAATTTGTTTAAATAAAGGTGCAGGATGACTGCCTTAACAACTATTTGATATGCAGAACGATTCTGGACCGCAAATAGTGTTATTTTCCGAACTTGTGTAAGCGCAACAAAGTGGCCCCAACAAAAATGATCGTTATGGGTACTGGAGGTGGGCAAAAGCAGGCGTTGAGCCTCCATGCAAAGACAAGCTTGTATGGAAAATATATTAACATTTACAAAACAGATGCATGATTGATTAATCAACACAGTTTGAGTTAAGCAAAAAAAAAAAAAAAAAA | |||||||||
gi|24059510|gb|BU868863.1|BU868863 M123B08 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence TAGAGCAAGCAAGGGGTCAA EST sequence (targeted fragment marked with yellow): AACTTCTCTTTACAGATTCCTTGGCATATAAGCGAACATGGGGATACCCATGGTGGCATTAGCCAAGCTCAACCTCCTCTTATCCAAATCCCACACTGGAACATCCTTGATTACTTGCTTGCTATGCCCTTATGTACTTAAACTCACCTTCAGTGTCAGGCTTGTTCGCCAAGCTTACACTGATCTGCTCTACTCATCGAGGCTCTTCTTCTTTCAGCTGAGTCAAATCGCCTTTGATGCTGATCAACCTGCAGCTCTAGCTGGAAATAGCACCAGACTGGGAAGAGCTCTAAGGTTACTTAATCAGAGGGTAACAAGAGCAAGAAGGTCGCCAACCGCACAAGACGATGAGGATAATTTCCATGCCCTCTCCATGTTCTCACTTTAAGTACAAATGATGATGGGAAACGGGTAATGATGATGATTTTACACCACCAATGAAATCCCATCTTAGTGATTGTATGGCTCTCGTTTGTTTTATGTCTTTCGTTTGAATGATTTTGTCAAA | |||||||||