| mature miRNA: TAGCCAAGGACGACTTGCCTG species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73889725|gb|DT492463.1|DT492463 WS02550.C21_M19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02550_M19 3', mRNA sequence TAGCCAAGGACGACTTGCCTG EST sequence (targeted fragment marked with yellow): GGGAGAACTTGACCTCCTTCAGATCAATCGTCTTGGGCCAACTTTCCATAGTTTCTCAGGCATGATGGACAGAGGACATGGCATTGTTATGCCCAGTAAGTGGGTTGCAGCAGCTGACAACTGCTGCAACTTAAAATAGCAAGGGAACAAAAATCGGGTTGGTGCTTGTTTCTTGAACTAGACCAGACCCCACCTTTGCAGGAACCTGCAACCTGATTATGGCTTGAAGTTGGACTTCACCATTTGGTTGTTAGGGCAAGTCGTTCTTGGCTCTAGTGCATTAATGGCATCTTTTCCATTCCATACAACCTTGCTGTCATGGGCTGGTTAGAGGTGCTAAATCCTTAATGCACTGTAAAATTTTTAGCAAATGGACAAGATAATAAACGGGTGTGTTTCCATCAATGAAACAAAGACTCTACCCAAAATTATGTTTAAGAATGATTGATGCTCTTGAAGCTTGATATCTACTCCATGGATTCCTAATTGTAAGAAATAACTAAGTATTTGTGTTATGTTCAGTATTTCTATTATTATAAATTTCATCTCATTTAGGGCTACAAAAAAAAAAAAAAAAAA | |||||||||
gi|24063015|gb|BU871491.1|BU871491 Q031B10 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence TAGCCAAGGACGACTTGCCTG EST sequence (targeted fragment marked with yellow): CACAGAGAGGAATAATATCAAGAAATGGGAGATTCAAGTGACTCAGTCTCCATTGATATGGAGACGCCTTCTCTTTGTGGAAAGGAGTATGTTATCGAAACTTACTATGGTCATGTGTCTGTTTCTGTATATGGAGACCAAGACAAACCAGCTCTTGTTACTTATCCTGATTTAGCTCTAAATCATATCTCCTGTTTTCAAGGATTATTATTTTGTCCTGAAGCATGCTCGTTGCTTCTTCACAACTTTTGCATATATCATATCAGTCCTCCTGGGCATGAGTTAGGAGCTGCAACAATTAGCCCTGATGACCCTTTGCTTTCTGTTGATGACTTGGCAGACCAAATTGCTGAGGTTCTTAACTATTTTGGACTTGATGCAGTGATGTGTATGGGGGTTACAGCTGGAGCTTACATTCTTACTCTATTTGCTATGAAATACAGGCAACGTGTCCTTGGCTTGATACTTATTTCTCCTCTATGCAATGCACCCTCTTGGACAGAATGGCTGTATAATAAGGTCTTGTCTAATTTACTATACTATTATGGAATGTGNTGGAGTTGTGAAGGAATTATTGCTTAAGCGATATTTCAGCAAGGAAGCTCGTGGTAGTGCTCAA | |||||||||