| mature miRNA: TAGCCAAGGATGACTTGCCTG species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|52494504|gb|CV241529.1|CV241529 WS02512.B21_H14 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02512_H14 3', mRNA sequence TAGCCAAGGATGACTTGCCTG EST sequence (targeted fragment marked with yellow): GTGGAATTCTGAGAAGGAGACAATCACGGGCAAAACTTGAGGCTCAAAACAAACTTGTGAAAAATCGAAAGCCATACCTTCATGAGTCTCGGCACATTCATGCCTTAAATAGGGTTCGAGGATCTGGTGGACGCTTTCTCAGCACAAAAAAGCTCCAACGATCTGATCCCACTTCCTCTCATGGCCAGTGTAATGTCCTAGATACCATCCACTTGCACCCAAAGAATAATGCATCCGAACTTGAAAGCTTCCAATCAAGAACTGGTCAATCCAGTGCCTCAAATACAACCCGCTCTGACACCACCAGTGTCTCCAACAGTGATGTCAATTTCAGGCAGCCAGATCGCGGATTCTCAGGTATTGCTGCTCACCTTGTTGGAGGCAGGCAAATCAATGGTGGGCTTATGAGCAGTGGAAACCAACACCATGCTTCTGTTGTTCGGTGAAAATGCGGAATAAGAAGACCGTGTCACCGGTCCAGGCAATTCATCCTTGGCTTTGTGTCTTTACTTGGTACAAAAAGTGCATGAAGGACACTGTTATGTATTTGATTTCTCTGCTGTTTGCTTTCTTTCTATATATACATCCTCCGTTTGTCAAAAGAAAAAAAAAAAAAAAAAA | |||||||||
gi|52497152|gb|CV244177.1|CV244177 WS0253.B21_P07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0253_P07 3', mRNA sequence TAGCCAAGGATGACTTGCCTG EST sequence (targeted fragment marked with yellow): TGAGGCGAAGACAGGCACGTGCTAAGGCAGAGCTTGAAAAAAAGGCAGTAAAAGTTAGAAAGCCATATCTACATGAGTCTCGACACCAACATGCTTTGAGAAGGGCAAGAGGTTGTGGTGGCCGTTTTCTCAATACAAAGAAGCTTGATAACAGCGCTACCAATCCCACATCAGAAAAGGGTAGTGGAGATTTGAATTCCTCTGGCGATCTGGAAGAAGGAAAAGGGTCACAGGCTTCCTCCAATGGTCATGGTAATGGCCATGCACTCTCATCAAGATATCATTCATCATCACATGATGGCAGCTTCTTGGGTCAGCAAAAGGAAACCACACACGGGAATAGGGTGTCTAATGGAGCTGTCTCCATTCATTAAACTTCCACCTCGAGTTGTACGGGGCCTTCAGCATTGCTACATTGGTTTGATTATTAACTCCAATAGAGACATCGTTTAATTTCCTTTTTCTCCTGGCTAGTCTTTGTATCTTATGGAAGGGTTTGCCTTCTGCAGGAAAAGCTGGAGGCATTAGCCATGTTCAACTTGGGAGGAAACCTTTCCTGTGCTGTGTTTCTCAGGCAATTCATTCTTGGCTTTAGGTCTTTGGTTACTTGGTGCATTCATGGTGGTGAGAGTGTAGTATATGTGATGGACTTCATGCTGTCTTCAGACTTGAACTAATTTCATCTCTCTTCTTTTAGTCGCTTCTGTAAAAATGGCAAAAACTTGTGTATCTACCTCGTAGAAATTACTCTCGAACGTAGTAATTCCAAATGGTCTGCATTTTAAGTTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|52498514|gb|CV245539.1|CV245539 WS0257.B21_L06 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0257_L06 3', mRNA sequence TAGCCAAGGATGACTTGCCTG EST sequence (targeted fragment marked with yellow): CCATTTATGTTAATGCTAAACAGTACCATGGAATTCTGAGAAGGAGACAATCACGGGCAAAACTTGAGGCTCAAAACAAACTTGTGAAAAATCGAAAGCCATACCTTCATGAGTCTCGGCACATTCATGCCTTAAATAGGGTTCGAGGATTTGGTGGACGCTTTCTCAGCACAAAAAAGCTCCAACGATCTGATCCCACTTCCTCTCATGGCCAGTGTAATGTCCTAGATACCATCCACTTGCACCCAAAGAATAATGCATCCGAACTTGAAAGCTTCCAATCAAGAACTGGTCAATCCAGTGCCTCAAATACAACCCGCTTTGACACCCCCAGTGTCTCCAACAGTGATGTCAATTTCAGGCAGCCAGATCGCGGATTTTCAGGTATTGCTGCTCCCCTTGTTGGAGGCAGGCAAATCAATGGTGGGCTTATGAGCAGTGGAAACCAACCCCATGCTTTTGTTGTTCGGTGAAAATGCGGAATAAGAAGACCGTGTCCCCGGTCCAGGCAATTCATCCTTGGCTTTGTGTCTTTACTTGGTACAAAAAGTGCATGAAGGACCCTGTTATGTATTTGATTTTTTTGCTGTTTGCTTTCTTTCTATATATACATCCTCCGTTTGTCAACATGGTTGAAAAGAGTTTGTCTTTGAAATCCATCCTCTGGTTGCCCTGATTGTTAAATATGGTAACTATGCAAGTATTTGCTCATCAGATTATCAAATAAATATCAGACTTGGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA | |||||||||
gi|73884445|gb|DT487183.1|DT487183 WS02533.B21_A01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02533_A01 3', mRNA sequence TAGCCAAGGATGACTTGCCTG EST sequence (targeted fragment marked with yellow): CATGCTTTTATTCACCCCCATTGGGGTTCTCATATGGGGGGGAGGACAGCTGGACGAGTCCCCCTCCCTGTTGATTTTGCAGATGATGGCCCAATTTATGTTAATGCTAAACAGTCCCGTGGAATTATCAGAAGGAGACAATCCCGGGCAAAGCTTGAGGCTCAAAACAAACTGGTAAAAAATCGAAAGCCATACCTTCACGAGTCTGGGCACATTCATCCCTTAAATAGGGTTCGAGGATTTGGGGGACGCTTTTTCAGCAAAAAAAAGCTCCAGGAATCTGATCCCCCTCCTAGTCAGGGTAATGTCCCAGATCCCATCCCCTCCCCCGTAAAAAATGATGCATCAGAACTAGAAAGCTATCAGTCTGGAACCGGACAATTTGGTGCCTCAAATACTCCCTGCTCTGACATCCCCAGTGTTTCCTACACCAATGTCACTTTTAGGCACCCAAAACCCCGGTTTTCAGGTATTGCTACTCCCCTTGGGGGAGGCATGGAAATCAACAGTAGGCTTATTTGCAGAGGAACCCAACCCCCCCCTTCCGTTGTTCAGGGAAAATATGGAAGAAGCCCGGGTAATCGGTCAGGCAATTCATCCTTGGCTTGGTTTTTTTTACTAAAAACAAAATGTCCCCGACGGCCCCTGTTATGTATTTGATCTTTCTGGGGTTTGCTTTTTTTTTTTTTTGTTTAAACATCCTCGGGCATGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA | |||||||||
gi|73884268|gb|DT487006.1|DT487006 WS02532.B21_I12 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02532_I12 3', mRNA sequence TAGCCAAGGATGACTTGCCTG EST sequence (targeted fragment marked with yellow): ATATGGTGGGGATGACAGCTGGACGAGTCCCACTCCCTGTTGATCTTGCAGATGATGGACCAATTTATGTTAATGCTAAACAGTACCGTGGAATTATCAGAAGGAGACAATCACGGGCAAAGCTTGAGGCTCAAAACAAACTGGTAAAAAATCGAAAGCCATACCTTCACGAGTCTCGGCACATTCATGCCTTGAATAGGGTTCGAGGATCTGGTGGACGCTTTCTCAGCAAAAAAAAGCTCCAGGAATCTGATCCCACTCCTAGTCAGTGTAATGTCACAGATACCATCCACTCACACGTAAAGAATGATGCATCAGAACTAAAAAGCTATCAGTCTGGAACCGGACAATCTGGTGCCTCAAATACTACCTGCTCTGACATCACCAGTGTCTCCTACAGCAATGTCACTTTTAGGCAGCCAGAACGCCGGTTCTCAGGTATTGCTACTCACCTTGGTGGAGGCATGGAAATCAACAGTAGGCTTATTTGCAGAGGAACCCAACACCACACTTCCGTTGTTCAGTGAAAATATGGAAGAAGACCGTGTAATCGGTCAGGCAATTCATCCTTGGCTTCGTCTCTTTTACTAAGAACTAAATGTGCACGACGGACACTGTTATGTATTTGATCTCTCTGGGGTTTGCTTTTTTTTTTTTTTGTTTATACATCCTCGGGCATGTCAAAATGGTTGGAAAGAGTTTTGTGTTTGAAACCCATCACTGGGTTACACTGATTGTTAAATATGGCAAACGATGCAAGTGTTTTCTCATCAGATTATCAAATAAAAGATCAGACTTGGGGCTTTGATCTAGCAAACAAAAAAAAAAAAAAAAAA | |||||||||
gi|24063353|gb|BU871829.1|BU871829 Q035A07 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence TAGCCAAGGATGACTTGCCTG EST sequence (targeted fragment marked with yellow): GAGCAAAGGAAACCCACACGGGAATAGGGTGTCTAATGGAGCTGTCTCCATTCATTAAACTTCCACCTCGAGTTGTACGGGGCCCTTCAGCATTGCTACACTGGAAAAGCTGGAGGCATTATCCATGTTCAACTTGGGAGGAAACTTTTCCTGTGCTGTGTTTCTCAGGCAATTCATTCTTGGCTTTCGGTCTTCGGTTACTTGTTGCATTCATGGTGGTGAGAGTGTTGCATATGTGGTGATGGACTTCATGTTGTCTTCAGACTTGAACTAATTTCATCTCTCTTCTTTTAGTCGCTTCTGTAAAGATGGCAAAAACTTGTGCATCTACCTAGTAGAAATTACTCTCGAATGTGGTAATTCCAAATGGTCTGCATTTGAACTTTCATGTGACCTCTTCTTTATGTGTGAGCAAAGGGTTCTTCTACCCTAA | |||||||||
gi|73887894|gb|DT490632.1|DT490632 WS02545.B21_I01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02545_I01 3', mRNA sequence TAGCCAAGGATGACTTGCCTG EST sequence (targeted fragment marked with yellow): GGTTCAAGACATGCAAACACACGCTTCCTCCAATTGCCATGGTAATGGCAATGGACTCTCATCAAGATATCATTCATTATCAGATGATGGCAGCTTCTTGGGTCAGCAGAAGGAAACCACACATGGGAATGGGGTGTCTAATGGGAACGTCTCCATTTATTAAATTTCCACCTTGAGTTGCAAAGCTGGAGGCATCAGCCATGTCCAACTTGGGGGGCGAAACTTTCAGCGTGTGGTGTTTCTCAGGCAATTCATTCTTGGCTTTGGGTCTTTGTTACTTGGTGCATGCTGGTGGTGTGAGTGGAGCATATCATATGTTGTGATGGACTTCATGCTGTCTTCAGACTTGAACTAATTGCATCTCTCTTCTTTTCGTCGCTTCTGTAAATATGGCAAAAACTAGTGTATCTACCTTGCAGGAATTAATCCCAAATGTAGTAATTCCAGTGGTCTGCGTTTGAACTTAACTTTCGTGTGATCATTTCTTTATGTGTGAACAGAGGGTTTACCTCATGTACCCTAAAAAAAAAAAAAAAAAA | |||||||||
gi|73879070|gb|DT481808.1|DT481808 WS02533.BR_A01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02533_A01 5', mRNA sequence TAGCCAAGGATGACTTGCCTG EST sequence (targeted fragment marked with yellow): GGTGTGGGTGTGGTGGTCTGGAGAGTTTCAAGAGAGGGAGACATGTCCAACTTCTTCCCTACAGCCTCCTCTTGAAATTCTTTGCTTCTTCTTCAACTACTACTTATTGACTTCCTTATCAGATCCCAAGGATGAAAGTTGTGGGAAGGGCGTGAAGGGAAAAATGAAGCCAGTTCTCTTGTTGAGTACTCCAGATAGCGTGTCTAATCACTCACAAGCTGATTGTAGCTATTCAATGGTTCGTGCTCCATATGCTGATCCTTACTTTGGTGGGCTGTGTAATCCATATGAACTTCATGCTTTTATTCAGCCCCATCTGGGTTCTCATATGGTGGGGATGACAGCTGGACGAGTCCCACTCCCTGTTGATCTTGCAGATGATGGACCAATTTATGTTAATGCTAAACAGTACCGTGGAATTATCAGAAGGAGACAATCACGGGCAAAGCTTGAGGCTCAAAACAAACTGGTAAAAAATCGAAAGCCATACCTTCACGAGTCTCGGCACATTCATGCCTTGAATAGGGTTCGAGGATCTGGTGGACGCTTTCTCAGCAAAAAAAAGCTCCAGGAATCTGATCCCACTCCTAGTCAGTGTAATGTCACAGATACCATCCACTCACACGTAAAGAATGATGCATCAGAACTAGAAAGCTATCAGTCTGGAACCGGACAATCTGGTGCCTCAAATACTACCTGCTCTGACATCACCAGTGTCTCCTACAGCAATGTCACTTTTAGGCAGCCAGAACGCCGGTTCTCAGGTATTGCTACTCACCTTGGTGGAGGCATGGAAATCAACAGTAGGCTTATTTGCAGAGGAACCCAACACCACACTTCCGTTGTTTCAGTGAAATATGGAAGAAGACCGTGTAATCGGTCAGGCAATTCATCCTTGGCTTCGTCTCTTTTAC | |||||||||