miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TCGGACCAGGCTCCATTCCTT
species: Populus trichocarpa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|73880506|gb|DT483244.1|DT483244 WS02522.B21_A23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02522_A23 3', mRNA sequence

TCGGACCAGGCTCCATTCCTT
|||||||||||| ||||||..
AGCCTGGTCCGAAGTAAGGGG

EST sequence (targeted fragment marked with yellow):
GAGTGAATTTAAATCACATTCAAACCACTTAATGCAGCTTAACTCAAGTAGGGTGCGATAAGGGGTGTCAATACCTTCCCTAGCCACAGCCAACCCCTTACCTTTAACATTTCTGATAAGACCAATACACCCGAGTTTTTTAGCGATCCTTAATCAAACAACTAGGTGGAGACTCCTGACCCTTCAATGTCGCTTGTCCACGTGTGATAAAAAAACAACTTCTACGCACCACACTCTTAAACATCCCCTGCATACTGCTCCTCTAGAAAGCAATCATCAAGCTTTACGCTGGAAAAGTATGACATCCATATTCCACATTGCGGGGAGACTTTAATTACGAACCTGCCATGTTCAAACATCCAGCTTTGATTTTGGAAAACAGCAAAACTCTTCTGAAAGAGGAAGCAAAGAAACCAAGGGCACGACTATAGAAAACTTTAAATATCTGAGCCAAAATGTTGTATCCAAAATTCATATCACGAGTATGCAAGTACGTCTAGACTTTTATTACCAACAAGTTTTCTATCTCTTTCAATAGAGAATCGAGAGACTCTTCAAACAATGACAGAAAGCGCATCACTTTCTTGCTTGCACATCTTCACACAGCACATGCCCTCTTCTCTGTAAAATATTGATTTGGAGATCAGAGCCAAACCTCAGAAACAACTGTACATGCAACAGCCCTTGAGATGGAAGCAATGATTGGGGGGAATGAAGCCTGGTCCGACAACCCTAATACGTGATCAATCTTAAATAAGATACTAGATCTACAGGTAGAAAGTTAGAATAGATTGATCAACAAAAAGT