| mature miRNA: TCTTGCAAGCTGCCAAACCC species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73889667|gb|DT492405.1|DT492405 WS02550.C21_K03 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02550_K03 3', mRNA sequence TCTTGCAAGCTGCCAAACCC EST sequence (targeted fragment marked with yellow): GATTCCGCCCAAATCTCCTCACGAGCTTCTTCAAGAGAATCATTACCATGACCCTTGGAGAGTTCTCGTCATTTGTATGCTATTAAACTGCACATCGGGTGGCCAGGTCAGACCAATTTTAAATGACTTCTTCACCCTATGTCCTGATGCAAAGACCACCACTAATGTTGACCAGAACGAGATTGCCCAGCTAACACGCAGTTTAGGTTTCAAAAACACGAGGGCTGAGAAGATAAAACGCCTTTCTGAGATTTACTTGCAAGAGGACTGGACCCATGTCACCTTTCTGCCTGGTGTTGGAAAGTATGCCGCTGATGCATATGCAATATTCTGCACAGGGAGGTGGGACAGGGTGGTGCCAGAGGATCACATGTTGACTAGGTACTGGGAATTCCTTCGCAAGGGTAGATGGATCATAGAATAGATGGATTGTCCCTGTTTTGTATTTTGAAGAGACAGATCACCTGGGGGTTAGTTTATAATATGTTTATTGTGTCCCTAATACTAGGTCTTTTGATGCCAACTGTGTGTGGCAAATTAAACCCCCGATCTGTGTCTAGCTTTGAATAGCCATTCAGGTATAACTAACTACTGGAGTAGTATCCCAGCTATGTTTGGACTGAGATAATGTAGGGATTGCCAGCTTGAAAGGAATGTTGCTCTCTTCTTCCTTGGAATTGCAAGTGTAGCTCGATGGATTGCTCTTTATGCTGTTTCAGAAAACTTCAACAAGTCCCTATCACTTTCCTTTTGTAAGGTAGCGTAAGCCTTTGTAAAAGGCCTGAAGTCTTTCCCATGCATATGAAGTGCACTTTAAGGTTTTAAAAAAAAAAAAAAAAAA | |||||||||
gi|52493741|gb|CV240766.1|CV240766 WS02510.B21_E12 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02510_E12 3', mRNA sequence TCTTGCAAGCTGCCAAACCC EST sequence (targeted fragment marked with yellow): ATTGCCCAGCTAACACGCAGTTTAGGTTTCAAAAACACGAGGGCTGAGAAGATAAAACGCCTTTTTGAGATTTACTTGCAAGAGGACTGGACCCATGTCACCTTTCTGCCTGGTGTTGGAAAGTATGCCGCTGATGCATATGCAATATTCTGCACAGGGAGGTGGGACAGGGTGGTGCCAGAGGATCACATGTTGACTAGGTACTGGGAATTCCTTCGCAAGGGTAGATGGATCATAGAATAGATGGATTGTCCCTGTTTTGTATTTTGAAGAGACAGATCACCTGGGGGTTAGTTTATACTATGTTTATTGTGTCCCTAATACTAGGTCTTTTGATGCCAACTGTGTGTGGCAAATTAAACCCCCGATCTGTGTCTAGCTTTGAATAGCCATTCAGGTATAACTAACTACTGGAGTAGTATCCCAGCTATGTTTGGACTGAGATAATGTAGGGATTGCCAGCTTGAAAGGAATGTTGCTCTTTTTTTCCTTGGAATTGCAAGTGTAGCTCGATGGATTGCTCTTTATGCTGTTTCAGAAAACTTCAACAAGTCCCTATCACTTTCCTTTTGTAAGGTAGCGTAAGCCTTTGTAATATGCCTGAAGTCTTTCCCATGCATATGAAGTGCCCATGCTGTTTTGTAAGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA | |||||||||
gi|73887071|gb|DT489809.1|DT489809 WS02543.B21_D22 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02543_D22 3', mRNA sequence TCTTGCAAGCTGCCAAACCC EST sequence (targeted fragment marked with yellow): GTTCTGCACAGGGAGGTGGGACAGGGTGGTGCCAGAGGATCACATGTTGACTAGGTACTGGGAATTCCTTCGCAAGGGTAGATGGATCATAGAATAGATGGATTGTCCCTGTTTTGTATTTTGAAGAGACAGATCACCTGGGGGTTAGTTTATACTATGTTTATTGTGTCCCTAATACTAGGTCTTTTGATGCCAACTGTGTGTGGCAAATTAAACCCCCGATCTGTGTCTAGCTTTGAATAGCCATTCAGGTATAACTAACTACTGGAGTAGTATCCCAGCTATGTTTGGACTGAAATAATGTAGGGATTGCCAGCTTGAAAGGAATGTTGCTCTCTTCTTCCTTGGAATTGCAAATGTAGCTCGATGGATTGCTCTTAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAA | |||||||||
gi|24072545|gb|BU881021.1|BU881021 UM57TG05 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence TCTTGCAAGCTGCCAAACCC EST sequence (targeted fragment marked with yellow): GTTTAAAAACACGAGGGCTGAGAAGATAAAACGCCTTTCTGAGATTTACTTGCAAGAGGACTGGACCCATGTCACCTTTCTGCCTGGTGTTGGAAAGTATGCCGCTGATGCATATGCAATATTCTGCACAGGGAGGTGGGACAGGGTGGTGCCAGAGGATCACATGTTGACTAGGTACTGGGAATTCCTTCGCAAGGGTAGATGGATCATAGAATAGATGGATTGTCCCTGTTTTGTATTTTGAAGAGACAGATCACCTGGGGGTTAGTTTATACTATGTTTATTGTGTCCCTAATACTAGGTCTTTTGATGCCAACTGTGTGTGGCAAATTAAACCCCCGATCTGTGTCTAGCTTTGAATAGCCATTCAGGTATAACTAACTACTGGAGTAGTATCCCAGCTATGTTTGGACTGAGATAATGTAGGGATTGCCAGCTTGAAAGGAATGTTGCTCTCTTCTTCCTTG | |||||||||