| mature miRNA: TCTTGCCTACTCCTCCCATT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|18018917|gb|BI137969.1|BI137969 F096P48Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence TCTTGCCTACTCCTCCCATT EST sequence (targeted fragment marked with yellow): CTGACTTCTCGTCTTTATAATCCTCACAGTGCCTTGCTATTTTTTGTATTGCAGGAACCTGCAAATCCTTATTTGCTTTTGAGATGCATGATGAATGTTTCAAACAAGAAGTGGAAAGGTTCAACCAGTGGAGAAAAGCTCTTATCATGAAGGGTGTGTGTCTTTCTGGGTGGAAGTGGGATCTCGCTGATATGGCAAAAGGGGACGAATCAAAATTTATCGAAGATGTGTTGAATAAATTGGATTGCAAATGCTTTCATGTTTCCAAGCACATGATAGGTGTTGATTCCGGTTTGTTACTAGAAATTGCTACGAAAGATGTTTACGTTGTGGGCATATATGGAATGGAAGGAGTGGGCAAGACACCTACGACAGAGTCTGTATTTAACAGACTTTGTTAAATATTACAGGGAAGTTGCTTTCTTTGAAATGTTAAAGAAATCTCAAAACAATGGGAAGTTATGGTTCAATTACATGAATCACTTCTAAAACCAAATATTCTAAGGATCAAAAGAGTTGAAAGAGAAATCAATTTG | |||||||||
gi|73889806|gb|DT492544.1|DT492544 WS02551.C21_B21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02551_B21 3', mRNA sequence TCTTGCCTACTCCTCCCATT EST sequence (targeted fragment marked with yellow): GGAGAAACGGAGAGTCCTAGCAAGTCTTTGGAGATGGGAGAGTATGCAAGAAGAAAAATTCATGATTTAATATTCCTTCTTGCCTACTCCTCCCATTCCATCTGCTTTCTGCGACTCCTCTCTTTCCTTATTCTAGACAAAAGCGTGATCTAAAATTAATCAAGGAGCAAGAGGGAAAGGAAAGAGGGTTGCTGGGAGTTACGGGTATGGGAGGATTGGACAGTACTGCTTGGTTTTAATTAACCAAAGTCTGTTCTTTCCAACGCCTCCCATACCGGTGATCTCCAGCTGTTTCCTCCCTTTCCCTTGCTTGTCCTGCTTCAGATCCTTCAGTTCGGTAAGATCTGTCCTTGTATGCTTGTCGTTGGTCACATGATGATGGTGGTGATGCGTGCTCTTCTTTTGTTTTTTAAAAAAGAGCATCATTTCGTTGACTTGTTAATCTTGCTTTTGGGCGGGATATTGTTACATGTCTTGTATAATGATTTTTATTAGCCATTTTTTTATGCTCAGGTGACAAAAGCGAGTTGTTGGTTATGGAGTATCGTTGAAAAGATTAGAGGAAGTTTTAATCTGTTGGTAGATAAAAGTAAATCATTTGTCAATACAGCTAGATTTAATCTTATAAGGTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|24061272|gb|BU870175.1|BU870175 Q009E16 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence TCTTGCCTACTCCTCCCATT EST sequence (targeted fragment marked with yellow): CCCAAAGGTCGACCTGGGAAAGGAAAAGGTGGCGGCGGTGGCGGAGGCGGAGGAGGAGGCAAGAAGAAGAATAAGTCGTTCCTCAAGAAACTCAACATTGGGAAGCTCAAGAAAGTTTTCAGACTCGGCAGCAAGGCCGTCAATGCCGCGCAAGGTGGTGGTGGATGAATGAGAGAGGAGAGACTGATACAGCACGGTTCGATTCATCATGATTATTGCGCTTTCCATCGGCGGATTACAAGCGTTCGAGGAGGTTCAAATGCGCATACCTAGGTCAGCAACTGATGTTGTTTCAGCTTCGTCCGAGCTGTAACCTTTCGAGCTGGCGAGCTTACCCAGGCCCTGATGTCGAAGGGGAA | |||||||||
gi|24061500|gb|BU870403.1|BU870403 Q012B01 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence TCTTGCCTACTCCTCCCATT EST sequence (targeted fragment marked with yellow): GGATATTAACACCATCTAGAAAGCCTCGTCTTCACGGCTCCTGTCTGTGGTGTGTAATAGATGAGAGAAACGGAGAGTCTTAGCAAGTCTTTGGAGATGGGAGAGTATGCAAGAAGGAAAAATTCATGATTTAATATCTCTTCTTGCCTACTCCTCCCATTCCATCTGCTTTCTGCGACTCCTCTCTTTCCTTATTCTAAACAAAAGCGTGATCTAAAATTAATGAAGGAGCAAGAGGGAAAGGAAAGAGGGTTGCTGGGAGTTACGGGTATGGGAGGATTGGACAGGCCTGCTTGGCTTTAATTAACCAAAGTCTGTTCTTTCCAACGCCTCCCATACCGGTGATCTCCAGCTGTTTCCTCCCTTTCCCTTGCTTGTCCTGCTTCAGATCCTTCGGTTTGGTAAGATCTGCCCCTGTATGCATGTCGTTGGTCTCATGATGATGGTGATGATGCGTGCTCTTCTCTTGTTTTTTAAAAAAGAATATCATTTCGTTGCCTTGTTAATCTTGCTTTTATGCGGGATATTGTTATGTGTCTATTATAATGATTTATGTTAGCCCTTTTTTTTTATGCTCANGTGACAAAAGCGAGTTGTTGGTTATGGAGTATCGTTGAAAAGATTAGAGGAAGTTTTGA | |||||||||
gi|18018942|gb|BI137994.1|BI137994 F096P76Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence TCTTGCCTACTCCTCCCATT EST sequence (targeted fragment marked with yellow): TATAATCCTCACAGTGCCTTGCTATTTTTTGTATTGCAGGAACCTGCAAATCCTTATTTGCTTTTGAGATGCATGATGAATGTTTCAAACAAGAAGTGGAAAGGTTCAACCAGTGGAGAAAAGCTCTTATCATGACGGGTGTGTGTCTTTCTGGGTGGAAGTGGGATCTCGCTGATATGGCAAAAGGGGACGAATCAAAATTTATCGAAGATGTGTTGAATAAATTGGATTGCAAATGCTTTCATGTTTCCAAGCACATGATAGGTGTAGATTCCGGTTTGTTACTAGAGATTGCTACGAAAGATGTTTACGTAGTGGGCATATATGGAATGGAAGGAGTGGGCAAGACACCTAC | |||||||||
gi|73867166|gb|DT469904.1|DT469904 WS01919.C21_E08 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01919_E08 3', mRNA sequence TCTTGCCTACTCCTCCCATT EST sequence (targeted fragment marked with yellow): GATGCAGCACTTGAGGGCGTATTGTATTGCAAGCATCACTTCTCCCAACTTTTCAAGGAAAAGGGCAGCTACAACCACCTCATCAAGTCCGCAACAATGAAGCGTGCAGCGGCTTCTGTGCCAGAGGCTTAAATATCTCCATTTGATATTTTATTTGTGTGGCTTTATCTACTTTTCATTGTGTTTTCCTTCCATGCCCTCCGATTTCCATTGGAAGGAGTAGGCAAAACTTGGTTCTGCCTTGTTTTTTTTCTCTCTTTCTGCCCAGCTATACTGGGCATGTTTGTTGTGTTTGATTGATAGATGGGTTTCAAATTCTCACAAATGTAAAATTACTTGCGGAGGAATTTCAATTGCAAATATTGGATTCTACCAAAAAAAAAAAAAAAAAA | |||||||||
gi|18017366|gb|BI136438.1|BI136438 F068P29Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence TCTTGCCTACTCCTCCCATT EST sequence (targeted fragment marked with yellow): CTGACTTCTCGTCTTTATAATCCTCACAGTGCCTTGCTATTTTTTGTATTGCAGGAACCTGCAAATCCTTATTTGCTTTTGAGATGCATGATGAATGTTTCAAACAAGAAGTGGAAAGGTTCAACCAGTGGAGAAAAGCTCTTATCATGAAGGGTGTGTGTCTTTCTGGGTGGAAGTGGGATCTCGCTGATATGGCAAAAGGGGACGAATCAAAATTTATCGAAGATGTGTTGAATAAATTGGATTGCAAATGCTTTCATGTTTCCAAGCACATGATAGGTGTTGATTCCGGTTTGTTACTAGAAATTGCTACGAAAGATGTTTACGTTGTGGGCATATATGGAATGGAAGGAGTGGGCAAGACACCTA | |||||||||
gi|18018145|gb|BI137197.1|BI137197 F082P08Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence TCTTGCCTACTCCTCCCATT EST sequence (targeted fragment marked with yellow): CTGACTTCTCGTCTTTATAATCCTCACAGTGCCTTGCTATTTTTTGTATTGCAGGAACCTGCAAATCCTTATTTGCTTTTGAGATGCATGATGAATGTTTCAAACAAGAAGTGGAAAGGTTCAACCAGTGGAGAAAAGCTCTTATCATGAAGGGTGTGTGTCTTTCTGGGTGGAAGTGGGATCTCGCTGATATGGCAAAAGGGGACGAATCAAAATTTATCGAAGATGTGTTGAATAAATTGGATTGCAAATGCTTTCATGTTTCCAAGCACATGATAGGTGTTGATTCCGGTTTGTTACTAGAAATTGCTACGAAAGATGTTTACGTTGTGGGCATATATGGAATGGAAGGAGTGGGCAAGACACCTACGACAGAGTCTGTATTGAACAGACTTTGTTAAATATTACAGGGAAGTTGCTTTCTTTGAAATGTTAAAGAAATCTCAAAACAATGGGAAGTTATGGTTCAATTACATGAATCACTTCTAAAACCAAATATT | |||||||||
gi|18017806|gb|BI136858.1|BI136858 F075P52Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence TCTTGCCTACTCCTCCCATT EST sequence (targeted fragment marked with yellow): CACAGTGCCTTGCTATTTTTGTATTGCAGGAACCTGCAAATCCTTATTTGCTTTTGAGATGCATGATGAATGTATTCAAACAAGAAGTGGAAAGGTTCAACCAGTGGAGAAAAGCTCTTATCATGAAGGGTGTGTGTCTTTCTGGGTGGAAGTGGGATCTCGCTGATATGGCAAAAGGGGACGAATCAAAATTTATCGAAGATGTGTTGAATAAATTGGATTGCAAATGCTTTCATGTTTCCAAGCACATGATAGGTGTTGATTCCGGTTTGTTACTAGAAATTGCTACGAAAGATGTTTACGTTGTGGGCATATATGGAATAGGAAGGAGTGGGCAAGACACCTACGACAGAGTCTGTATTTAACAGACTT | |||||||||
gi|24065175|gb|BU873651.1|BU873651 Q057H05 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence TCTTGCCTACTCCTCCCATT EST sequence (targeted fragment marked with yellow): GGCCGGGGGAGGGAAACGGAGAGTCTTAGCAAGTCTTTGGAGATGGGAGAGTATGCAAGAAGGAAAAAATCATGATTTAATATCCCTTCTTGCCTACTCCTCCCATTCCATCTGCTTTCTGCGACTCCTCTCTTTCCTTATTCTAGACAAAAGCGTGATCTAAAATTAATCAAGGAGCAAGAGGGAAAGGAAAGAGGGTTGCTGGGAGTTACGGGTATGGGAGGATTGGACAGGCCTGCTTGGTTTTAAGTGACCAAAGTCTGTTCTTTCCAACGCCTCCCATACCGGTGATCTCCAGCTGTTTCCTCCCTTTCCCTTGCTTGTCCTGCTTCAGATCCTTCAGTTTGGTAAGATCTGCCCCTGTATGCATGTCGTTGGTCTCATGATGATGATGCGTGCTCTTCTTTTGTTTTTGAAAAAAGAATATCATTTCGTTGACTTGTTAATCTTGCTTTTATGCGGGATATTGTTATGTGTCTTGTATAAAGATTTTATTCGCCCTTTTTTTTATGCTCAGGTGACAGAAGCGAGTTGTTGGTTATGGA | |||||||||
gi|52498078|gb|CV245103.1|CV245103 WS0256.B21_H21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0256_H21 3', mRNA sequence TCTTGCCTACTCCTCCCATT EST sequence (targeted fragment marked with yellow): GTGATTCTCAGCATGGGAAAGGTCAGAGCAATAAGAGGAGGAGGCAAGAGGAAATTGCCAGTGCAATTTTACCTGAAGATACTGTTAATGACAGTGTAACTTCAACCCAGGAAGCTGTTTGTAAGGATCAGCATGCAGCTGAAGAAGCAGATGTAGTAATTATGGACAAAATCATTAAAGTTTCTGAAGTGACTTGTGAAATAACTAGCACAGACACTTTTGCTCATCAAGAAATATCAGTGCAGCTTCAAAGTTCTGAAAAGACATCCCACCACAATACTGGTATAGACAAGGAGGTTTCAGAAGTGTTAAAGGAGTAGTGTGTGGGAGATGTTGGAAATAGCTCCAAGTAAAGTCAGCAATGCAGGAGCTGGTAGATTTTGAACTCCATGTCAGAAAAGGGGAGCTTAAACAGCAAGTCTTTTAGATGTAGACGATGCAGACAACACCCACATTTTCTGGAAAAGAGTTAAAACTTAAAATAGTATTGCCTTGTAGATGTGAATATATGGTGTTTTTAAACATGCTAATATGCTTGCAAGGTCTCGAAAACTTGAGTTTCTGAAATGTTGTGATTTTTGGTCAATTTCACTGGACTTACCATGACCTATGCTGCCTTGTAAAGTGCATATCTTCATGGACAAAAAAAAAAAAAAAAAA | |||||||||