| mature miRNA: TGAACCGAACCGAACCGAAA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|24064324|gb|BU872800.1|BU872800 Q047A04 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence TGAACCGAACCGAACCGAAA EST sequence (targeted fragment marked with yellow): TGGGGCTTTCTCTTTCTTTTTCTTTTTCTGAGACACAGAATTTTGGTTTGGTTTGGTTTGGTATCATCAATTTGTCGACAAGAAAGAATCTTGTGGTGGTAATGGTCTTAAGGTTGTTTTGTTTGTGGGATTGCTGATCTCTTTTGTTTTCGTCGTGTA | |||||||||
gi|73868805|gb|DT471543.1|DT471543 WS01214.BR_D13 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01214_D13 5', mRNA sequence TGAACCGAACCGAACCGAAA EST sequence (targeted fragment marked with yellow): GGTCGAGCAGAAACAGAGCAAACCACTACTCTAGAACTTGTTATTTAATCTCTATATATTTTGCTGTTTCTCCCTTTGATTTGTAAAGAAAGAAAGTTCAGGTTTAGGTTTCGGTTCGGTTTAGTTTGATATTCGAAGATCAGCAGAGAGAGATTAAGTCAACTCAGAATGGAGAGCACGCTGAAGGAGATGAGAGACGGAGCTTCGGTGCTCGACATGGACCCCAAATCCACTGTCGGTGGTGGTGTTTGAGGACGTTTATGGCGAGGATCGTGCCACTGAGGACCAGCTTGTTACTCCCTGGACCATCTCCGTTGCCAGTGGATTTACTTTGTTGAGGGATCCACAGCACAACAAAGGGCTTGCTTTCACTGAGAAAGAAAGAGATGCACACTACCTGCGTGGTCTTCTTCCTCCAGCAACTATCTCTCAACAGCTTCAGGAAAAGAAATTGATGAACACCATTAGACAATATCAACTTCCTCTTCAAAAATATACGGCCATGATGGAACTTGAGGAAAGGAATGAAAGGTTGTTTTATATGCTTTTGATCGATAACGTTGAGGAATTGCTTCCGGTTGTTTATACACCGACGGTTGGGGA | |||||||||
gi|73890543|gb|DT493281.1|DT493281 WS02553.C21_O16 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_O16 3', mRNA sequence TGAACCGAACCGAACCGAAA EST sequence (targeted fragment marked with yellow): TGCATTCTGTTAGAGATATTGCAAGCAGTGCGTTGCCTAAAGGGGCAATGGAGAAATTGAAGAAAAGCAAACATGGGATGCGATATGGGGAAGTTTCTCTTGCTGCAGCAATGACGCGTGTCAAGCTTGCAGCTTCACTTGGAGCTTCTTTAGTTTGGGTTTCTGGTGGATTAAGTTTGGTTCAATCTTTGATTAATGAAACCTTACCCTCTTGGTTTATATCAGTCCATGGGTCGGAGCAGGAAGGTGGAGAATCTGGAGGTATGGTTGAAATGCTAAGGGGTTTTGCACTTGCATACTTTGCAATGTTTTGTGGGACATTTGCATGGGGTGTGGACTCAGAATCAGCAGCATCAAAAAAAACGGCCAAAGGTGCTCAGGACCCACTTAGAATATCTGGCAAGTGCTCTAGAGGGGAAAATATCGCTTGGTTGTGATTGGGCTACTGCATGGGCGTATGCATCCGGGTTTGTGTGCTTGATGGTGGCTTGCACACCAAAATGGGTGCTTGAGGTTGATGTGGATGTATTGAAGAGGGTGAGCAAGGGGCTGAGACAATGGAATGAGGAAGAACTGGCTGTGGCCTTGCTGGGACTAGGTGGAGTTGGTACAATGGGCGCAGCAGCTGAACTGATTATTGAAACCGGATTGTAAATTTTGCCGAAAGCATAAAAGCTTGAATGCTAGTTAGAACTTATTTTTGGGATCCTTCTCTGGTAGAGCCAGGTGGGTGCTACTGGGTTCGGTTCGGTTTAGTTCGGTCCTAGAGAAGAATATTTAAAGCTACTAACATCTTTGGTTTTGTTTCTCAGTATAAAAAGCTCTTTTTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|52394125|gb|CV235494.1|CV235494 WS0122.B21_F19 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS0122_F19 3', mRNA sequence TGAACCGAACCGAACCGAAA EST sequence (targeted fragment marked with yellow): GACTTAGAGGTGGTATGCAAATTTTTGTAAAGACTTTGACTGGGAAGACCATCACGTTGGAGGTCGAGAGCTCTGACACCATTGACAATGTCAAGGCTAAAATCCAGGATAAGGAAGGAATCCCACCAGACCAACAGAGGCTTATTTTTGCTGGTAAACAACTTGAGGATGGACGTACCCTTGCTGACTACAACATTCAGAAGGAATCCACCCTCCACTTGGTGCTTCGACTGAGAGGCGGTATGCAGATTTTTGTCAAGACACTCACTGGAAAAACCATTACCTTGGAAGTCGAGAGCTCTGATACCATTGACAATGTCAAAGCCAAAATTCAGGATAAGGAGGGTATCCCACCAGACCAGCAAAGGTTGATCTTTGCTGGAAAGCAGCTGGAGGATGGACGAACTTTGGCAGATTACAATATCCAGAAGGAGTCGACTCTGCACCTTGTCCTTCGCCTTCGTGGTGGTTATTAAGCATTTGATGTTATGTGCTTCGGAGTCTGGTTCGTGTTTACTGGCCATTGTTGGATGGTTTCAAATAAGATTGCTGAACAACTTTTAAGTTTGCTTTTTGGTTTGGTTTGGTTTGATATGTTGAATCTTGAAATGGTCTTTTGGTCATTTTATGTCACATCCTTGATTTGCTGCAATAAATTTCTGTTTGAGAAAAAAAAAAAAAAAA | |||||||||
gi|73873448|gb|DT476186.1|DT476186 WS01228.B21_K07 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01228_K07 3', mRNA sequence TGAACCGAACCGAACCGAAA EST sequence (targeted fragment marked with yellow): GAAAGAAAGAAAGTTCAGGTTTAGGTTTCGGTTCGGTTTAGTTTGATATTCGAAGATCAGCAGAGAGAGATTAAGTCAACTCAGAATGGAGAGCACGCTGAAGGAGATGAGAGACGGAGCTTCGGTGCTCGACATGGACCCCAAATCCACTGTCGGTGGTGGTGTTGAGGACGTTTATGGCGAGGATCGTGCCACTGAGGACCAGCTTGTTACTCCCTGGACCATATCCGTTGCCAGTGGATTTAAAAGGTTGACGGATACAAAAAAAAAACAACGGGCGGGGGGGCC | |||||||||
gi|73894483|gb|DT497221.1|DT497221 WS01125.BR_N14 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01125_N14 5', mRNA sequence TGAACCGAACCGAACCGAAA EST sequence (targeted fragment marked with yellow): TCCCCGAACATTCACCCCTTAGCCGCCGCCCTCCCTTCCCCTCCCTTCTCTGCATATCTCATTCTCTCTCATTTTACTCTTTTTTTTCTCTCGTCCCTCTACTCTCTGTTCTGTTTTGATTTTTCTCCCTTTCCTCTACTATCTGCTCTGATTTGATCTTATGGATTTGGTTCCTTTGGGTTTTCTTCGGATCTTAGTTCTCCTATTGAGTCTGTGGTTGGCTCTACTAACAGCCAAATAGAGGACTATCAGATCCACCAAGAAAACCCCCTCCATTCTATATTCCGTCAAAAAATCTCATCTCTGACGTTAGTCTCCACCAACAGGACTGCTTGCTTACCAAAAGTTGCAGGCATCTCAAATAATTTGTCAAACGCATCTGAGATGACAAATGATGCAGCAGTAGGGTGTTTGGGGAGGGCAAAACAACATTTTGGGACTGGAGTATTGTTTTCTCAAAAGCCACATTAGACCTGGCCAGTGATCCAAAACAGAGGGAGGAATATTACTAGTGTTGGTAGAGGACCATTGGGTTTGAACCGGTTTGAAAGGGAAAAAAACCGAACCGAACCGAACCGAAATTATTTGGTTTGAACTGGTTTTCGGTTCGGTTCGGTTCAAAAAATTAAAAAAATAATAATTCGGTGTGGTTGTTTATTTTGGTTCAAAACCGGACCGAACCGGAAATGCTCAGCACTAGTAAAACTTAAGGAGCTCCTTTGAGACAAAACTAGTTGAGGTTTACAAAACCTGGGACTGTGTGGGAGTGGTAGTCACAGACAAATATTATTGATTTGGACAAAAAAAAAAAAAAA | |||||||||
gi|73873468|gb|DT476206.1|DT476206 WS01228.B21_L07 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01228_L07 3', mRNA sequence TGAACCGAACCGAACCGAAA EST sequence (targeted fragment marked with yellow): GAAAGAAAGAAAGTTCAGGTTTAGGTTTCGGTTCGGTTTAGTTTGATATTCGAAGATCAGCAGAGAGAGATTAAGTCAACTCAGAATGGAGAGCACGCTGAAGGAGATGAGAGACGGAGCTTCGGTGCTCGACATGGACCCCAAATCCACTGTCGGTGGTGGTGTTGAGGACGTTTATGGCGAGGATCGTGCCACTGAGGACCAGCTTGTTACTCCCTGGACCATCTCCGTTGCCAGTGGATTTACTTTGTTGAGGGATCCACAGCACAACAAAGGGCTTGCTTTCACTGAGAAAGAAAGAGA | |||||||||
gi|73870404|gb|DT473142.1|DT473142 WS01228.BR_L07 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01228_L07 5', mRNA sequence TGAACCGAACCGAACCGAAA EST sequence (targeted fragment marked with yellow): GAAAGAAAGAAAGTTCAGGTTTAGGTTTCGGTTCGGTTTAGTTTGATATTCGAAGATCAGCAGAGAGAGATTAAGTCAACTCAGAATGGAGAGCACGCTGAAGGAGATGAGAGACGGAGCTTCGGTGCTCGACATGGACCCCAAATCCACTGTCGGTGGTGGTGTTGAGGACGTTTATGGCGAGGATCGTGCCACTGAGGACCAGCTTGTTACTCCCTGGACCATCTCCGTTGCCAGTGGATTTACTTTGTTGAGGGATCCACAGCACAACAAAGGGCTTGCTTTCACTGAGAAAGAAAGAGATG | |||||||||