| mature miRNA: TGAAGCTGCCAGCATGATCTA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|52399751|gb|CV238263.1|CV238263 WS0125.B21_O23 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS0125_O23 3', mRNA sequence TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): CTATCATGAGCTGCGAGGAGAACTGGCTCAGATGTTCGGAATTGAGGGGAAATTGGAAAACCCTCATAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGATGTACTTCTCCTTGGAGATGACCCCTGGGAGTTATTTGTGAACAATGTTTGGTATATCAAGATACTCTCTCCGGAGGATGTATTAAAATTGGGAGAGCAGGGTGTAGAACCCTCTGGCCCAAATGCAGTGCACAGGATGAGTGGTGGTGTGGCTTAAGACCCTGCCCCCGGCTCCCCGAAACTGAGTGATCTAGAGCTGCATGGCATTCTTCATTCCACGTAGTTCATCAAATCCTCACTCCCTAGAGTTGAGATAAACTTGAACGAAATCCCATCTCCTCCAACGTGTGCACCTCTCCCGCTTTCTTTATATGTCTCCTACGTTATTATATATTACTTTGCCTAGACTAACTAGTTATTCTGAAGAATTTGACTTTTATCATGGATTAGATACATCTAAGTTCACTAGTGAGCCAAAAGAATTAGAATGTGGCAGAATGGTTCTAGGTATGTAAACTTGAATGAGCAATCATGCCATCCATGCTATTAAAATAAAAAAAAAAAAAAAACTCGACTATAGGAGTCGTATA | |||||||||
gi|73884795|gb|DT487533.1|DT487533 WS02533.B21_P08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02533_P08 3', mRNA sequence TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): TTCCAGAATTCTCTGTATGGTTGTGTGCAAGACTCTTCTGAGTTATTGCCAAATGCAGGACAGATGGACCCACCAACCCCAAGTCGAACATTTGTCAAGGTCTACAAATCAGGATCGGTTGGGCGCTCATTGGACATATCCCGGTTCAGCAGCTATCATGAGCTGCGAGAAGAACTGGCTCAGATGTTTGGAATTGAGGGGAAATTGGAAAACCCTCATAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGATGTACTTCTCCTTGGAGATGATCCCTGGGAGTTATTTGTGAACAATGTTTGGTATATAAAGATACTTTCTCCGGAGGACGTTTTAAAAATGGGAGAGCAGGGTTTTGAATCCTCTGGCCCAAATGCTGTCAAAGGATGAGTGGCAGCGTGGCTTAAGAACTGGCCACTGGCTCGCCGAAACTTAGTGATGTAAACCATTTGGCATTCTTCCTTCCACGTAGTTCGTTAAATCCTCACACCCTGGAGTTAAAGATGAACTTACACGAGATCCCATCTCCAACGTGTGCACCTCTCCCTGTTTCTTTGCATGTCTCAAGTTATATTATATAGTACTCCTACATATTTTGCTTAGACTAGCTAGTTATTCTGAAGAATTGACTTCTATCATGGATTAGATACTTGTAAGTTCATTAGTGAGCCTAAAGAATTAGAATCTGGCAGAATGGTTCTAGGTATGTAAACTTGTACGAGCAATCATGCCATTCATGAAATGAAATAAAAAAAAAAAAAAAAAA | |||||||||