| mature miRNA: TGAGATTGAGAGCTTACTCC species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73881425|gb|DT484163.1|DT484163 WS02524.B21_K02 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02524_K02 3', mRNA sequence TGAGATTGAGAGCTTACTCC EST sequence (targeted fragment marked with yellow): TTACTGCAGTGACTCTTATCCAGAAGGTTCCACCTGAACTAGAAACATTGAACACTGTTGTGGATACTCAGGCAACTTCAACATTGATTGCCGCTCAGGGACTAGATACTGGTGAAGCCAAAGAGAAGAAATTCCTGAGAAGGCCATCTAGAAAAATTATCGCAAATGGTCTGCTTCTTCTAGGGGGTGTAATCTTCCTGTCCCGTGGGCACTCTAGCCTTGGTGCTAAAGTTGCCATGGCATATATCCTGACAAAGCTGAGAAAACATGATGCCTCGTCAGGCCAAGAAAGGGAAAGATGATGTACATGATGACATTGTATGACCAAGACTAATGGTGGTGGACCTCATAAAGCTTGTTACCGCATATTCTGTTAACTAGAGTACGGAATCTGACATTTATGCATCTTAAGGAGAGTGCATATTTAGTCCGTGTAGGAGTGAGCTGAATTTCTTTCTCATCAGTGGTAGTTTGGTTCCTTGAATACTAAGTGTATAGAAAAGTTGTGACTTAATTATTCTTATTACCATTTTCCACTAATGTAATTATCAAGCCATCTTCAGGAAGTCAGGAGCCAACACCGAGGTGTGAAGATTGAGCCAGCACCAAAAAGTTTGGAAAGCTTAAATGTAGAGAGCTCTCAATCTTGTATCCTCTTGAAGACTCGAGATTTGCAGTATCAAGATTAGCCGTGACGAAATTACTGGGCTGTGCTCGATTGTCACTGCAGTTGCTCATGCCTGTAAAAGTGTTTTCTAAGTTGTTTTTTTGGCTGACAATTTTTTTAAAAAAATATTATTTTAATGTACTTTTAAAAAACTTTCACTGTATTATAAATCACATTATAAGCTAAAAAAAAAAAAAAAAAA | |||||||||
gi|60694478|gb|DN485094.1|DN485094 M105F06.3pR Populus female catkins cDNA library Populus trichocarpa cDNA clone M105F06 3', mR TGAGATTGAGAGCTTACTCC EST sequence (targeted fragment marked with yellow): TTGTTATTGGGTCAGAGAATTTTTAGTGTTGTAGGGCCAAAGGAGCCTGGAATGAGAAGGGAAAGGATGGAGGATAAAGATCAATGGGGAGTTTTAATGGAAAGTTCAGGTTTTGAATCGGTTTCGCTTAGCCATTATGCAATGAGTCAGGCTAAGATACTTTTATGGTATTGCAATTACAGTGATTTGTATTCTCTTGATGATTTTCAGCCTGGGTTTTTAACTTTAGCTTGGAATGAGGTGCCCCTACTCACAGTTTTGTCATGGCGATAATCGATGGGGCTGGACTTGAATTTGATTTAAGTTTCCCCCTGGTAATTTTTTTTTGGTGTGGAACAATGTTTTAGTTTGTATTATACGCCATCGAATGGGATTGTTGGGGGGTGCTTTTTGATCAGATCCCGAACTGGAAGGGTAATTAGTTTTTTTTTTTTTTATTGCAATTGTGCATTGACAGGTCCATTGAAAGCCTGTAACTAGTTGTAGTCTTTCAGTTTGGTCATTTAGATATATGGTTTCCTTTTGTATTCTGTTGGGTTTTTGTTATAGGTTTAAGTTCTTAGTCTCACAAATGTAAAAAACAAGTGACACA | |||||||||
gi|73868915|gb|DT471653.1|DT471653 WS01214.BR_J20 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01214_J20 5', mRNA sequence TGAGATTGAGAGCTTACTCC EST sequence (targeted fragment marked with yellow): GGGCAAAGGATCTGAAAGCAACAAACTAAACACCAAAAATCCTCCAACACTAGAAACGCTAAGAGCCCTTCAAGCCCACAAATCTTTTGGAGGCCTAAAACCATGTTTCCCAGTAGTTCAGCCACCCAAATCCCCTCCGCTAAAACTATGATCTCTGCAGCAGCCTCAGCTGCTGCCACAATTGTGCTCTTCCGCTCCCTTGATAAGGAGCATCTTCCTTATGAGTTCCAAAGCTACATCTTCTACAAACTCAAAACCTTGATCAACTCATTCTTCTTCGGAGTTCACTTTAGTTATTGAAGAATATGACAACCTTAACCACAACAATCTCTTCAAAGCCGCAGAGCTCTATCTTGAGCCCATAATTCCTCCGGATGCAAAGAAACTCAAGATCTCTCTGACCAAGAANAGAGAGTAAGTTCTCATTCTCTTTAGATAGAAACCAAGAAATTGTTGATACCTTTAATGGGATTACACTGAAATGGAAGTTCATCTCAAAACAAGTGCCAATAAAATACATTCCAAGCCCAGATAATTTTAATTCTATGCCAAA | |||||||||
gi|73869411|gb|DT472149.1|DT472149 WS01225.BR.1_H03 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01225_H03 5', mRNA sequence TGAGATTGAGAGCTTACTCC EST sequence (targeted fragment marked with yellow): GGCCAAAGGATCTGAAAGCAACAAACTAAACACCAAAAATCCTCCAACACTAGAAACGCTAAGAGCCCTTCAAGCCCACAAATCTTTTGGAGGCCTAAAACCATGTTTCCCAGCAGTTCAGCCACCCAAATCCCCTCCGCTAAGACTATGATCTCTGCAGCAGCCTCAGCTGCTGCCACAATTGTGCTCTTCCGCTCCCTTGTTAAGGAGCATCTTCCTTATGAGTTCCAAAGCTACATCTTCTACAAACTCAAAACCTTGATCAACTCATTTTCTTCGGAGTTCACTTTAGTTATTGAAGAATATGACAACCTTAACCACAACAATCTCTTCAAAGCCGCAGAGCTCTATCTTGAGCCCATAATTCCTCCGGATGCAAAGAAACTCAAGATCTCACTGACCAAGAAAGAGAGTAAGTTCTCATTCTCTTTAGATAGAAACCAAGAAATTGTTGATACCTTTAATGGGATTACACTGAAATGGAAGTTCATCTCAAAACAAGTGCCAATAAAATACATTCCAAGCCCAGATAATTTTAATTCTATGCCAAAATCTGAGGATAAGTTCTTTGAGTTGAGTTTTCACAAGAAGCATAAGGATGTGGTTATTGATGTTTATTTAAAGCACGTGATTGAAAAATCAAAAGAAACGAAAGAGGAGAAGAAGAGTTTGAAGCTTTTCTCGCTGAGGCATGACAGGATGTCGGGAAGGAGAGGGGATGTCTGGCAGTCAGTGAATCTTCATCATCCTGCTACATTCGATACGTTAGCAATGGATATGGAAGGGAAGAGGGTGATCATGGAGGATCTTGAGAGGTTTGTGAAGAGAAGGGAGTTCTATA | |||||||||
gi|73884952|gb|DT487690.1|DT487690 WS02534.B21_G08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02534_G08 3', mRNA sequence TGAGATTGAGAGCTTACTCC EST sequence (targeted fragment marked with yellow): GTCCAATTGCAGCAATGTTGAGGAAACATGGGGTAGCTCTCAATTTCACATGTTTTGAAATGCGCACAGTGGACCAGTTTGAGGGCTTTCCAGAGGCACTCGCAGATCCTGAGGGATTAGTTTGGCAGGTGCTGAATGCCGCATGGGATGCTTGTATCCCACTTGCCAGTGAGAATGCTCTTCCTTGCTACGACAGAGAAGGTTATAACAAGATATTAGAAAATGCCAAGCCTCTGCATAATCCGGATGGGAGACATTTATCTGTCTTTACCTATCTCAGGCTTAGCCCTGTTCTCATGGAGAGACACAACTTTCAAGAGTTCGAACGATTTGTGAAGAGAATGCATGGAGAAGCAGATTCAGATTCAAATGCAATTTGAACAGAAATTACACTATAGCAGAGGAGATGGACGGGTTAAGTTGCGCCTAGGAGTGTTGTCACACCTCGATAGATTATACTTTTTACGTGTTTGTCCTATGTCCATAACATACTATGTAGTATGTATAATAGTGCAGTTCGATATAGATTATTAATTGTTCCAAGCATCCTCGTTTTCACACCGAACTGTACCAAGCATCTATGTGTGTCCGAACAAGCTCATCCTTTTATCAATTACCATGTTCCTGGAGGGTCTTCGCTATGTTTCTACTTTCGGCTCACAGAGAATCATCGAGCTGATTTCATCGGCAGAAGACGGTATCCATGCAGATGTATACAGTGGTTGTTTTATGTGATAATAGTTGTTTTTTAATATATTATATTAAAGCAATTTTATTTTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|52498268|gb|CV245293.1|CV245293 WS0257.B21_A02 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0257_A02 3', mRNA sequence TGAGATTGAGAGCTTACTCC EST sequence (targeted fragment marked with yellow): GCTAATTTAGCCTTTGAAGGCACTGGCATTTCTGCAAAGGAATTCATTGGTGGTACAAAACAGCTAGTCATGCTGCTGAATTGACTGCTGGATTCTACAACTCTTCAAATCGTGATGGCTATGCTCCAATTGCAGCAATGTTGAGGAAACATGGGGTAGCTCTCAATTTCACATGTTTTGAAATGCGCACAGTGGACCAGTTTGAGGGCTTTCCAGAGGCACTCGCAGATCCTGAGGGATTAGTTTGGCAGGTGCTGAATGCCGCATGGGATGCTTGTATCCCACTTGCCAGTGAGAATGCTCTTCCTTGCTACGACAGAGAAGGTTATAACAAGATATTAGAAAATGCCAAGCCTCTGCATAATCCGGATGGGAGACATTTATCTGTCTTTACCTATCTCAGGCTTAGCCCTGTTCTCATGGAGAGACACAACTTTCAAGAGTTCGAACGATTTGTGAAGAGAATGCATGGAGAAGCAGATTCAGATTCAAATGCAATTTGAACAGAAATTACACTATAGCAGAGGAGATGGACGGGTTAAGTTGCGCCTAGGAGTGTTGTCACACCTCGATAGATTATACTTTTTACGTGTTTGTCCTATGTCCATAACATACTATGTAGTATGTATAATAGTGCAGTTCGATATAGATTATTAATTGTTCCAAGCATCCTCGTTTTCACACCGAACTGTACCAAGCATCTATGTGTGTCCGAACAAGCTCATCCTTTTATCAATTACCATGTTCCTGGAGGGTCTTCGCTATGTTTCTACTTTCGGCTCACAGAGAATCATCGAGCTGATTTCATCGGCAGAAGACGGTATCCATGCAGATGTATACAGTGGTTGTTTTATGTGATAATAGTTGTTTTTTAAAAAAAAAAAAAAAAAA | |||||||||