| mature miRNA: TGCCAATGGAAGCTTGCCCT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73896667|gb|DT499405.1|DT499405 WS0118.BR_D12 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0118_D12 5', mRNA sequence TGCCAATGGAAGCT-TGCCCT EST sequence (targeted fragment marked with yellow): GAAGAAACGAATAAAAATACCCTCACCACCTAACGAGCACAAAATTTGAATTCCTGCAACCACAAACAACATTACAAAAAAGAAGAAGAAGAAGAAAACCTTAAAGCAGCAACAACAACGACACTACCCACAACAACAACCTCATCAAACCTAGTAATAAGTTCTGTTCTGCTGTTTTTCCTTCTTTTTTTCTATAAAAAAACAGCTTTTTTCCCTCTTTCCTTGTTGTCTCAAGATTAAGGTTTCTTTTTTGGGTCTTTAGCTTCGAAGTGGACAAGGGGGCGTTTGTTGGAGACAAAGATTTCGAGTTTCTGGTTACCAATTGGTTTTGACATTGGAAGAAAAATTGGCGATAAAAATGATGTTATCAGCATCACCAGCTGCGGTGACAAGGAGCTCTCTGGAGGAGATGCTAGATTCGCTGCGGCGACGAGATGAGGCTTTGGAGAATTCAAAGGACCTGCCGCCCGCTTTGCCAGCACGGCCTGCTTCTAGGGCACGGCTTCCATCGGCACGCCACTCACTGCCTACAGACTTTAAAGTTGGTTCCAATGGACAAGTGGAGAGCAAAGTGGAGACAAGAGTTACTAAAGTGAAGGAGTATAATAAGAGAAAGGAGAAGGAGTTAGGGT | |||||||||
gi|73886958|gb|DT489696.1|DT489696 WS02542.B21_O23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02542_O23 3', mRNA sequence TGCCAATGGAAGCTTGCCCT EST sequence (targeted fragment marked with yellow): GTTTCAGCAAAGATAACATTCACAGTTTGGTGTACTCTGATTCCATAGAGAGATTCCACATTTCAGCATTCTTATCAGCTGTTTTAGCTCAAAATATACTGGAGGCAGAGGGTCCTTGGTTTGAGAGTTTTCTTCTTAATGCGCTCATGGTTTTTTTCTGTGAAATGTTAATTGATATCATAAAGCATTCATTCCTCGCCAAATTCAATGACATGAAGCCTATTGTATACTCTGAATTTCTTGAAGAGCTTTGCAACCAGACACTGAACATTCAAACAGAGAATACAGAAAGTAGAAAGAGAACTCTTACATTCATTCCTTTGGCTCCAGCATGTGTGGTTATCCGAGTGCTGACTCCAGTATATTCTGCTCACCTCCCCCCCAGTCCCCTTCCGTGGAGGCTTTTTTGGATCCTTTTCTTGTCTGCCTTGACCTATGTTATGCTCACAAGCCTGAAGGTGATGGTTGGCATGGGCCTCCAAAAGCATGCCAATTGGTACGTCGAAAGGTGCCGGAGGAGGAAAAAACGTATTCACAATGATTAATTCTGATAAAAGAAACAGATCTCATTACACACACACACAAGATTTAATGAGGTTTTACATCACATGGATGGAGAAGGCTTCCATTGGCAACAGATGGAGGCGGTTGGTTCCAGTAGCTGGAAATGTAACAGTGAATTAAATCTCCGGGAGGGGGATTAAGTATCGACAGCCGCCCCGCCGTTTCGGTTCAATTTCAACTCTCACAAGGGTTTCCTTCAATTTTGTCCAGAAGAAACATCATTGAGTGGTTTATACGAAATATAACAAAGGATCAGTGTTACACTAAATTTATTGAATATCCAGTAATTAAAAGAAGAAAAGAAATTCGTTTCGTTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|24074621|gb|BU883097.1|BU883097 UM86TC09 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence TGCCAATGGAAGCTTGCCCT EST sequence (targeted fragment marked with yellow): GTCATCTTATACTGAAGGAGGATGATATTATCGGCATCCTTGAGACAGATGATATCAAGGATCTTAAGCCACTGAATGATAGAGTATTCATAAAGCTTGCTGAGGCAGAGGAGAAAACTGCTGGAGGCTTGTTGCTGACAGATGCAACTAAAGAGAAACCTTCTATTGGCACGGTGATAGCAGTTGGACCTGGACCACTTGACGAGGAAGGTAACAGGAAGGCACTACCCGTGTCCCCAGGAAGCACAGTTTTGTATTCCAAGTATGCTGGGAATGACTTCAAAGGGAGTGATGGTGCTAACTACATCGCATTGAAAGCTTCCGATGTAATGGCTATACTCTCTTAGTTGTCAGTATTCTCTACATGTGTGACTGAGTTTTGTGGCTGAGTTGCCTCAGGGCATCCGGATTGTGATTGTAGTCTTTGAATGTAATTTGAACTGCTGGATTGTTTGAATCAATTTGTAGCACAAATTCTCACTAAGATTTCTGGCTGACAACCCCAGTGGGTGGGGGGGTGGA | |||||||||
gi|73867011|gb|DT469749.1|DT469749 WS01918.C21_M07 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01918_M07 3', mRNA sequence TGCCAATGGAAGCTTGCCCT EST sequence (targeted fragment marked with yellow): AGCACAGTTGACAGCATCCTCAATTTCGGTTTCAGCAAGGAACTTGTCTTCCTTGGAAGGATTAAGAGCTTCTAATGTTAAGTTTGCGTCTTTTAAACCAGCTGGTGGCTTTGCTCTCTCTCAACGCCCTTTTCGGTGCTTGGTAGTTAAAGCTGCCACTGTTGTCGCTCCCAAGTACACATCCATTAAGCCTTTGGGTGATAGAGTGCTGGTGAAGATCAAGACTGTTGAGGAGAAGTCTGAGGGTGGCATCTTACTTCCATCTTCTGCCCAAACAAAGCCTCAAGCTGGTGAGGTGGTTGCTGTTGGAGAAGGGAAGTCGATTGGGAAGACCAAGCTGGACATTTCTGTGAAGACTGGTGCCCGGGTTGTATATTCCAAGTATGCGGGGACTGAGGTGGAGTTCGATGGCTCAAGTCATCTTATACTGAAGGAGGATGATATTATCGGCATCCTTGAGACAGATGATATCAGGGATCTTAAGCCACTGAATGATAGAGTATTCATAAAGATTGCTGAGGCAGAGGAGAAAACTGCTGGAGGCTTGTTGCTGACAGAGGCAACTAAAGAGAAACCTTCTATTGGCACGGTGATAGCAGTTGGACCTGGACCACTTGACGAGGAAGGTAACAGGAAGGCACTATCCGTGTCCCCTGGAAGCACAGTTTTGTATTCCAAGTATGCTGGGAATGACTTCAAAGGGAGTGATGGTGCTAACTACATCGCATTGAAAGCTTCCGATTTAATGGCTATACTCTCTTAGTTGTCAGTATTCTCTACATGTGTGACTGAGTTTTGTGGCTGAGTTGCCTCAGGGCATACGGATTGTGATTGTAGTCTTTGAATGTAATTTGAACTGCTGGATTGTTTGAATCAATTTGTAGCACA | |||||||||
gi|52498785|gb|CV245810.1|CV245810 WS0259.B21_H03 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0259_H03 3', mRNA sequence TGCCAATGGAAGCTTGCCCT EST sequence (targeted fragment marked with yellow): GTCGGAGAGAAGGGCGGTTTCAGAGGGCGGTTGCCCCCTCTCTTTGATTGTTTAGCGTAGCCGATGATTACTTCTATACATAATCAACAGCCCTTCATACACACATTCATACATATACATGAACACACACTTCTGTCTCTGTCTCTCTCTCTCTACCTGCCTCTCTCTCTCTGAAACTGTGTGCAAAGGGGCGGTGATGATATCTTCGCTGTGCAGAAATCAGGCAGGAAGAGGACACCCTTCCGTTGGCATGGTGATTCTGAATGGTTGCTGTGAAATCTGAGGGATATTCCTGTCATTTTGCAGCTCATTCATTGTCGCAGCCAAGAAGGGGTTTTCTTTTCTTGTCTGGTTGAGAAACACTTCTAATCTGAGCCTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73884794|gb|DT487532.1|DT487532 WS02533.B21_P07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02533_P07 3', mRNA sequence TGCCAATGGAAGCTTGCCCT EST sequence (targeted fragment marked with yellow): GGGTGGTTGCTGTTGGAGAAGGGAAGACTATTGGAAAGGCAAAGCTGGACATTTCTGTCAAGACTGGCACCCAGGTTGTGTATTCCAAGTATGCTGGGACTGAGGTGGAGTTTGATGGTTCAAGTCACCTTATACTGAAGGAGGATGATATTGTTGGCATCCTTGAGACAGATGATATCAAGGATCTTAAGCCTCTGAATGATAGAGTATTCATAAAGGTTGCTGAGGCAGAGGAGAAAACTGCTGGAGGCTTGTTGCTAACAGAGGCCACTAAAGAGAAACCTTCTATTGGCACGGTGATAGCAATTGGACCTGGACCACTTGATGAGGAAGGTAACAGGAAGGCACTATCCGTGTCCCCAGGAAACACAGTTTTGTACTCCAAGTATGCAGGGAATGACTTCAAAGGGAGTGATGGTGCCATCTACATCGCGTTGAGAGCTTCTGATGTAATGGCTATACTCTCGTAGTTGTCCATTGGAATATGCTTCGCTACCTGGAATTTTGTAGTTGAGTTGCCTAAAGGCTTATGGATTGTGATTATAGTCTTTGAATCTAATTTGAATTGCTGCATTGTTTGAGTCCAATTGTGGCGAATTATTGCTAAGATTTCTGGCTGACACCCTCAGCGTAGGTGGGGTGGGTGGGGTTCTTCCGAGAGGGTTATGGATGGTAATATTAAATTAAACGCGCTTGTCGAAGGAATTTCAATCCATTCTATGTTAGTGCATTAGCAGGAATGCAATCATCTTAAAAAAAAAAAAAAAAAA | |||||||||