| mature miRNA: TGCCTGGCTCCCTGAATGCCA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|52385485|gb|CV231206.1|CV231206 WS0193.B21_N12 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS0193_N12 3', mRNA sequence TGCCTGGCTCCCTGAATGCCA EST sequence (targeted fragment marked with yellow): CTAACCTTGAGCAAGCTCGGGACAGGCAGAGCCGACAGCCAGAGAGCCCCCTGACTCCATCAAGACAAATGCTGGCACCATCAGTGCACTTTTATGCTGGGGAATGGGAGGAACTCCCCACAGTTTTATCTGTTGTGAGGAGCGATACATTTGAAGTGACAACAGGGATGAGCCTGAGCTTTTCTGAGGAGGATTTCATGGATGGATGTAGTAGCCAAGATGGTAGCATCATTGGTCAGGAGACTTCTTCAAGACGATCAAGGAAGCTTTCAGGGAGCCGGGCATGGGAAAGGGCTAGTGAGACTGGTCATGGAGAAGGGGGTTATGATGTTATTCTGATGACAGATATCCCACACTCTGTGTCTTCTTTGAAGAAGCTATATGCTCTCATCAAAAAGTGTTTGAGGCCTCCATATGGCGTATTATACTTGGCAACAAAGAGAAATTATGTTGGTTTCAGTAATGGAGCACGACAGCTAAGAAGCCTGGTGGACGAGGAAGGCATTTTCGGAGCGCATTTAGTTAAGGAGATGACTGATAGAGATGTCTGGAAGTTCTTTCTCAAGTGAAACATAAAGTTCAGAACTCAACATAAGTACCTGCTAACTGATCACATATTTTCAGATTATATTTCTTCTAATATCCTATTTGTATATCTCAAATCACAATTGTCATCATTTTTTTCTTTCATGAAAACGGAATCAGTGTTTAAAAGTTTTGCTAGCGTGCAATTCCTTGCTTGTGCCTTCTGTAACCCCTCCTCTTCCTCCTTGTCTTTCCCTTCTGCTTAATTTTTTTCACATTTTGCTTGTATAAAAAAAATATTCAGCAAATCTAAGATTCAAATTAATGATGTTATATAATGCTATTAATTTTTGTAAAAAAAAAAAAAAAAAA | |||||||||
gi|52394833|gb|CV235845.1|CV235845 WS01221.B21_N05 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01221_N05 3', mRNA sequence TGCCTGGCTCCCTGAATGCCA EST sequence (targeted fragment marked with yellow): GTTGGAGAGGGCGGTGTCTCAAGAGGCTGTGGTGGAGGCAGTAGAGAGGGCGGCTAAAGGCTTGCCGTTTGAGGTTGTCTACTATCCGAGGGCAGGGTGGTATTCAGATTTTGTGGTGAGGGCTGAAGTGGTGGAAGCTGCACTATGTGTGTTTTGGACTGCTGGGATGAGAGTGAAGATGGCTGTGGAGACTGAGGATTCCTCCAGAATGACTTGGTTTCAGGGGACTGTTTCGGGTACTGGTTTGCCTGACTGTGGTGCATGGCGTGGCTCTCCTTGGCGCATGCTTCAGATTACTTGGGATGAGCCTGAAGTTCTGCAGAATGTAAAGAGAGTGAGCCCTTGGCAAGTGGAATTTGTTGCAACCACACTGCCAATTCAAGACGCATCCCCCCCAATGAAGAAATTGAGATATCCTAATGATTCTGGGTTCCTGACAAATGGAGAACTTTTCTTTCCGATGTCAGACCTAACTAATTCAAGAACGGGGCACATGAATGCTTCAATGTTGAATTATAGTACTTTTCCTGCTGGCATGCAGGGAGCCAGGCAAGATCCTTTTTCCACATTCAGTTTATCCAACTTAATAAGTGAAAATGCTTCTCAGGTGTTTGGTGACAAGGTCTTTGGAAACAACTTGGTACCCAAAAAAAAAAAAAAAA | |||||||||