| mature miRNA: TGTTGCCAGACCCAAGGCAC species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73882054|gb|DT484792.1|DT484792 WS02526.B21_G21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02526_G21 3', mRNA sequence TGTTGCCAGACCCAAGGCAC EST sequence (targeted fragment marked with yellow): GCAAATATGTACCACAGAGATCTTAAACCAAAGAATATTTTGGCAAATGCAAATTGCAAACTTAAAGTATGTGACTTTGGTCTGGCAAGAGTAGCATTTAGTGATACACCAACCACTGTTTTCTGGACGGACTATGTTGCTACAAGATGGTATAGAGCTCCAGAGCTGTGTGGATCTTTCTTTTCAAAGTATACACGAGCAATTGATATTTGGAGCATTGGCTGCATCTTTGCTGAGGTACTGACAGGGAAGCCACTGTTTCCGGGTAAAAGCGTTGTTCATCAATTAGATTTGATCACTGATCTTCTTGGGACTCCTTCATTAGAAACCATTTCTAGAGTCCGAAATGACAAGGCAAGAAAATACTTGACAGAAATGAGGAAAAAACAGCCTGTGCCATTTGCACAGAAATTTCCAAATGCAGATCCTTCGGCACACAGGCTACTGCAAAGGCTACTAGCATTCGATCCAAAAGATCGACCAACTGCTGAAGAGGCATTAGCTGACCCTTACTTTAAGGGCCTAGCCAAAGTTGAGAGAGAACCTTCCTGTCAGCCAATCACGAAGTTGGAGTTTGAGTTTGAAAGGCGAAGGGTAACAAAGGAAGATGTTCGGGAACTGCTATACCGGGAAATACTGGAATACCATCCACAGCTGCTCAAAGACTACATGAATGGAAATGAAAGCACTAATTTTCTCTATCCTAGTGCCATAGGTAATGTTTAGAAAGCAGTTTGCATA | |||||||||
gi|52498751|gb|CV245776.1|CV245776 WS0259.B21_F17 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0259_F17 3', mRNA sequence TGTTGCCAGACCCAAGGCAC EST sequence (targeted fragment marked with yellow): GCAAGTCACAAAATCTGGAAACTTGAATGAGTTTTCAATGGTTATGCTAAATAATACCCTTTCTTTGCCACTGGGGCTTATTCTTATTTTTGTTTTCAATGAAGTGGACTATCTCTCCAGAACACCACTTTTGAGGTTACCTACCTTTTGGTTGGTTGTGACGTTAAGTGGTTTTTTGGGTCTGGCAATTAGCTTCACTTCTATGTGGTTTCTTCATCAAACAGGGGCTACCACATATAGTCTTGTGGGGTCACTGAACAAGATTCCTCTGTCTGTCGCCGGCATCCTTCTGTTTCACGTGCCCACCAGTTTGCAAAACTCAGCAAGCATTTTATTCGGTCTTCTGGCAGGAGTGATTTTTGCTAGAGCCAAAATGCGAGAGAGATCTTAGAGCTGACTATCCCGACTTGTTGTATTTGTTGTACACATGATTGAGACATGCAATCGACTGAATTGCATCTGACCAGTGGCATACATCACAGACCTGGGAATCGGTTGAGCAGTTCCCTTGATGAGGAAAACATGGCAGCACATCTTTTTCTTTCAGGTGTGCTGTTTCATGTTGAACTTCCATTTTGACCAAGATCACAGGATTTTGTTGCGATGCATTGAGCATCTAGTTTTGTTGTATTGCAGAAACCATCATGTATAATTTATAGGGCCTCGTTTTGTCCCTGTACTTGCTGTGTTGTTCTTATAGATTCTTTTATTGGATATGAAATGGCATAGTATATTTTCCAGCGAAAAAAAAAAAAAAAAAA | |||||||||
gi|52403158|gb|CV239963.1|CV239963 WS0233.B21_P24 PT-MB-A-13 Populus trichocarpa cDNA clone WS0233_P24 3', mRNA sequence TGTTGCCAGACCCAAGGCAC EST sequence (targeted fragment marked with yellow): AGAACATGCAGAAGGCTGTGAGGTTGCAGCTGAGATGGCTGAAGTTGCTTCTTCAGATGGGAAGGCCTTCTGCATCTCTCATGTTGATGTCGGTCTAGATGCAGCTGCTGTCCGAGAAGCTGTTTTGAAAGTCTTGGAGCGGAAGGGGATTTCTGCTATGGTTTTCAGCACTGATGAAAGCACAAACAAGGTTGTGGTGTGTGCTGGTGTGCCAGAGAAGCTGGACAAGGGAAAGGGGTTGGAAGTATCAGAGTGGCTAACTACTGCTTTGGGGCCTCTGAAAGGGAGGTGCGGCAAAGGAAAAGCGGGCCTTGCCACCGGCCAGGGAACTGATGCATCGCATTTGGATGAGGCCATGGGTTTGGCAACAACATTCGCACAGATGAAGTTGAGATGATTGATGTTTTTTAATCTTATTTGTGTTGCTGCTACGTGATATCCCTGCTGCTTGTCGACAGACTTATTCGAGTTGCTGAAACGCATGCATACAGAAACAGTGATTATACAGTTGCTGGTACAAGCAACTAGGTAATTGAAGGCAATGGATTGCAGGGTATGAACTGTTAATTTATAGAAAATGATACTGATTTTTCCAGTCCTTTTTGTCTACCTTTTGTTTTCTTCTTGAAAATTCGTGCACAAGAATATCATTATCCTTTGTCTGTAACAAAAGTTCGACTCACATCGCTAAGGACTTCAGTCATAGGCCGCCAGCTCATAAAATCTGGAACTCTAAAAAAAAAAAAAAAAAA | |||||||||