| mature miRNA: TTACCAACGGAATTACCGACG species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|52494602|gb|CV241627.1|CV241627 WS02512.B21_M08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02512_M08 3', mRNA sequence TTACCAACGGAATTACCGACG EST sequence (targeted fragment marked with yellow): AAGGAGTAGAGTGCTCAAACACTGCCAAACCAAGTTCTGAGGCAAATGGAGATCATAAAAGAAAACAATATGAATTAGCATCTGAAATACAACATCAAAATAAATCACCGAAAATGGTTCAAGATGGTCACCAATCATCACCGAATAGCAGTAAAGGCTCCTTCAAGCAGCCAAAGCGTGGCAAGCTGGACTGGAATGTTCTTAGACCAAAAAGTCAACACAATCAAAATAAAAGAGGGTGAGCATTAGTTGGTCATTCCCTTGGTAAAAATGAAATTTCTTGTCTCATTAATGTCAGGTTGAGCATTTGCTTCTGTAACTGGGTGTACTTCTTTTCTAGCCCTTCAGCTTTCTCTTTTAGCGAGTATTGACTTATACAAAATGAATTAAGAGATTGTGCAAACTTGTTGTCATGATTCATATCATTAATGGCCAGATTTTCTTATTGAGCCTTCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73885471|gb|DT488209.1|DT488209 WS02535.B21_M21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02535_M21 3', mRNA sequence TTACCAACGGAATTACCGACG EST sequence (targeted fragment marked with yellow): GCCAGGTTTTACAGGATATGGTGGATTGGGTGGTGGTGGTGCCGGCGTCGGTGCTTCTGTTGGTGCGTTTTCATCGTTTAGGTTGCCCCCAAGTTCAGTGGGAATGCCTACTGGTGGATATCCAGATCCTGGGCAGTATAGCTTGTCATCATCAAATGCTTCATTTCCAAGTCAGCATCAGGGAGCATCCCCTGCCCCAAGGGTTCCATTTGGGGGAATGTATCCAAATTTGCCCCCTTACTATTGAGGTGTATGACAGCTTGTTGGGCGCAGATGCTTTTTGTGGTACTCGTGATTGCCTGATTGCAGACTATAGGGTTTTTGGTTGATGAATGTATTAGCTGTGCTTTTACATCCGCTTTTTCACTTCATTTGCACTTTTAATCCTGGTTCATTTTTTAGTGTTTGTTATTTTTTAGATAAACGAGTGTTGGTTGTTAAGATGACTGAATAGACTAGTCCTTGTACTTTTGTCAGAAGCTATGCCCAACTTGGAATTAATTATATCAATAAGACATGAGTATTGTTAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA | |||||||||
gi|73884525|gb|DT487263.1|DT487263 WS02533.B21_D14 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02533_D14 3', mRNA sequence TTACCAACGGAATTACCGACG EST sequence (targeted fragment marked with yellow): CTACCATACTCCGCCAAACCTTATACTCCACCACCCGTATGGGCCTTTATGATGTCCTCAAACATAAATGGACGGATCCAGATACTAATACCATGCCACTTGTACGTAAGATCGTAGCTGGACTAATCTCCGGTGCTGTCGGGGCTTCTGTTGGTAACCCTGCTGATGTAGCGATGGTCCGTATGCAGGCCGATGGACGTCTCCCAATTGAACAGCGTAGAAACTACAAGAGTGTTGTTGATGCCTTAAGTCAAATGTCAAAGCAGGAGGGTGTCGCTAGCCTGTGGCGGGGTTCGAGTCTTACAGTCAACCGTGCAATGATTGTGACGGCATCACAGCTTGCATCATATGATCAAGCCAAGGAGATGATCTTGGAGAAGGGTTTGATGAGTGATGGGATCGGCACCCATGTTGCAGCAAGTTTTCTGGCTGGTTTTGTGGCTTCCGTTGCTTCAAACCCTATTGATGTGATCAAGACTAGAGTTATGAACATGAAGGTTGAGCCCGGGGTTGAGCCACCTTATAAGGGTGCATTAGATTGTGCACTGAAGACTGTCAAGGCAGAGGGTCCTATGGCCTTGTATAAGGGCTTTATCCCTACAATTTCAAGGCAAGGACCTTTCACTGTTGTGCTATTTGTGACATTAGAGCAAGTTCGGAAATTACTCAAAGATTTCTGATCAATTATTATGACGATGAAGATAGATTAAGATGTATCTAAACTGAAGGAAGGCAGTAGAACAAGCTCTCAAGCTTGTATATTCATTGATTTGTTTGTTCAACTCTGATTACATGTTGGAAGCAATATAATTTTTCCCCCTTCATTATTTGCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73886520|gb|DT489258.1|DT489258 WS02538.B21_L14 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02538_L14 3', mRNA sequence TTACCAACGGAATTACCGACG EST sequence (targeted fragment marked with yellow): GATGGATTGCAAGGACAGGTGCAGGGTGGGAATGTTCATGGAGATGGTGGAATGGGGATGGTGCTGCAGACAGGGTATGGCGCGCCAGGTGGATATGGTTCTTATGGTGGTGCGTTTTCGAGTGGCGTGCCGCCAATGGGTGGTCATCAGCAGCAGCACCATCATCCTGCTGCTCCTTTGAATGCTTCACTGGGTGGGCCTGGGTTGGGGTCTCAGGGGGTAGTTGGTTTGAGTGGTACTGGGGGTGGTAGTTATGGCCCACCTTATGGTGGGTATGGTGGACCAGGTTCTACAGGATATGGTGGATTGGGTGGTGGTGGTGCCGGCGTCGGTGCTTCTGTTGGTGCGTCTTCATCGTTTAGGTTGCCACCAAGTTCAGTGGGAATGCCTACTGGTGGATATCCAGATCCTGGGCAGTATAGCTTGTCATCATCAAATGCTTCATTTCCAAGTCAGCATCAGGGAGCATCCCCTGCACCAAGGGTTCCATCTGGGGGAATGTATCCAAATTTGCCACCTTACTATTGAGGTGTATGACAGCTTGTTGGGCGCAGATGCTTTTTGTGGTACTCGTGATTGCCTGATTGCAGACTATAGGGTCTCTGGTTGATGAATGTATTAGCTGTGCTTTTACATCCGCTTCTTCACTTCATCTGCACTTTTAATAGTGGTTCATTTTTTAGTGTTTGTTATTTTTTAGATAAACGAGTGTTGGTTGTTAAGATGACTGAATAGACTAGTCCTTGTACTCTTGTCAGAAGCTATGCACAACTTGGAATTAATTATATCAATAAGACATGAGTATTGACAAAAAAAAAAAAAAAAAA | |||||||||