| mature miRNA: TTCACATCGGGAAAAAGGTCC species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73879408|gb|DT482146.1|DT482146 WS02519.B21_A10 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02519_A10 3', mRNA sequence TTCACATCGGGAAAAAGGTCC EST sequence (targeted fragment marked with yellow): AGAAGGCGCTCCCACTGCTGTTTCTCATGGCCTCTGGCTTAATATCCCTGATTATGATGCTCCCACCCAGCTTGTGAAGCCTCGTGAGAGAAATACACGATATGTTGATGCTGTTCTGACAGTACCTAAGGGAACCCTTTTCCCGATGTGCGGTATGAATCTGGGATTCAACCGTGAATTGATTGGACCTGCAATGTATTTTGGGCTCATGGGTGATGGCCAGCCAATTGGACGCTATGACGACATGTGGGCTGGCTGGTGCATGAAGGTCATATGTGACCATATGGGATGGGGAGTTAAGACTGGTTTGCCCTACATCTGGCACAGCAAAGCAAGCAACCCGTTCGTTAACCTAAAAAAGGAGTACAAGGGTATCTACTGGCAGGAAGACCTGATCCCATTCTTCCAGTCTGCAGTTCTTCCCAAGGAATGCGTCACTGTTCAACAATGCTACATTGAACTTGCCAAGCAGGTCAAGGAGAAACTTGGCAAGGTTGATCCCTACTTCATTAAGCTAGCTGATGCCATGGTCACTTGGATTGAAGCTTGGGATGAACTCAACTCTTCAGGGGAAAAATCTTCAAAGAGTACCTCAAAGTAGAGTATTCGAAACCGTGTTGTCTGTCTTTTTAGTACTAAATCTGGTAGCCGCTTCATTGTACCTTTATCATGATGGTCTAGACGTCGTCCATCATTATTATTTATTGCAAAATTTTCTTACCCTTTTGAGTTGAAGTTTGAGAGCATTCCTAGTGCTTAGCTGGGTGTAACCTTTTCTGCTACATCGCTATCAGCTTTAGATGATATCAGATTGAAAAAAAAAAAAAAAAAA | |||||||||
gi|52493644|gb|CV240669.1|CV240669 WS02510.B21_A07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02510_A07 3', mRNA sequence TTCACATCGGGAAAAAGGTCC EST sequence (targeted fragment marked with yellow): TCCCACCCAGCTTGTGAAGCCTCGTGAGAGAAATACACGATATGTTGATGCTTTCTGACAGTACCTAAGGGAACCCTTTTCCCGATGTGCGGTATGAATCTGGGATTCAACCGTGAATTGATTGGACCTGCAATGTATTTTGGGCTCATGGGTGATGGCCAGCCAATTGGACGCTATGACGACATGTGGGCTGGCTGGTGCATGAAGGTCATATGTGACCATATGGGATGGGGAGTTAAGACTGGTTTGCCCTACATCTGGCACAGCAAAGCAAGCAACCCGTTCGTTAACCTAAAAAAGGAGTACAAGGGTATCTACTGGCAGGAAGACCTGATCCCATTCTTCCAGTCTGCAGTTCTTCCCAAGGAATGCGTCACTGTTCAACAATGCTACATTGAACTTGCCAAGCAGGTCAAGGAGAAACTTGGCAAGGTTGATCCCTACTTCATTAAGCTAGCTGATGCCATGGTCACTTGGATTGAAGCTTGGGATGAACTCAACTCTTCAGGGGAAAAATCTTCAAAGAGTACCTCAAAGTAGAGTATTCGAAACCGTGTTGTCTGTCTTTTTAGTACTAAATCTGGTAGCCGCTTCATTGTACCTTTATCATGATGGTCTAGTCGTCGTCCATCATTATTATTTATTGCAAAATTTTCTTACCCTTTTGAGTTGAAGTTTGAGAGCATTCCTAGTGCTTAGCTGGGTGTAACCTTTTCTGCTACATCGCTATCAGCTTTAGATGATATCAGATTTGAAATTGAATATTTAAAAGAAAAAAAAAAAAAAAAAA | |||||||||