| mature miRNA: TTCACGTCCACTGTTCATGA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73885284|gb|DT488022.1|DT488022 WS02535.B21_E19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02535_E19 3', mRNA sequence TTCACGTCCACTGTTCATGA EST sequence (targeted fragment marked with yellow): AAGTTGTGGGTTGGCCACCCATTAGATCATTCCGTAAGAATGTCATGGCTGTACAGAAGAACAGCAATGACAACGGTGAAAAATCCGGTAGCAGTGGCACCGGTGTGGCTTTTGTTAAGGTTAGCATGGATGGTGCTCCGTATTTACGAAAAGTGGACTTGAAATTATACAAGAGCTACCAAGAACTTTTTGACGCTTTAGGCAAAATGTTCAGCTCCTTCACCATTGGTAACTGTGGCTCCCAAGGAATGAAAGATTTCATGAATGAAAGCAAATTGATAGATTTCTTGAATGGTTCCGATTATGTGCCAACTTATGAAGACAAGGATGGAGATTGGATGCTTGTAGGAGATGTTCCATGGGAAATGTTTGTGGATTCATGCAAGCGCTTGAGGATTATGAAAGGGTTTGAGGCTATTGGACTTGCCCCGAGAGCCGTAGAGAAGTGCAAGAACAGAATTTGAAGTGCTTTTTTCCCAGTCAATTTGGTCAGCTGATCCAATCGTCCCCAGAGAAAAGGAACGACAGGCTAAAAAGGGATTTGAGCTTTGAAGTTTGGATGTTTATGTACCATGTTTTGTTTTGTTTTTTTTTTTTTTTAGTTTTTTCTTTTTCACATACATAGTAAGTTTCAAGTATATGAGGAAATATATTTGAAGGGATTTGTTAACTAGCTAGCTAGGAGCATGAAGTAATAATAGAAGAAGATGTTTATAAAACTTCTTTTGTTATGTTTGATCATGTGTAATGTTTATTATCAGAATGGCTTGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA | |||||||||
gi|60702163|gb|DN491973.1|DN491973 V037G11.3pR Populus male catkins cDNA library Populus trichocarpa cDNA clone V037G11 3', mRNA TTCACGTCCACTGTTCATGA EST sequence (targeted fragment marked with yellow): TGGTGGTGGTGGTGGTGGTAGTAATATTGGGTCAATTGTAAAAAATCAAATAGTGAGGCATTTCTCAAGAGCAAGAGCAGTGGATGTGAAGAGGATAAACCCTAAGGTTCCATTTTCTGAAGCTGCTTCTATTGCTCAGTCTCTTTATCAAGTCATCAAAGAACATGGTCCTCTCACTGTTTCCAATACCTGGAATCAAGCCAAGGAAGCAAATATTAGTGGATTAAATAGCAAAACACACATGAAGATAATGCTTAAATGGATGAGGGGGAGGAAGATGCTGAAGCTGTTCTGCAACCCTAACAGCAAGAAGTTTCTGCACTGCAGTTTACCAGAAGAACCACGAACTGAACAATCAAATAGTGCACCAGAACTGAATCTGCAGACCAAGAGGAAGCCTTCCAAGAAGAAGACTTCAATAAAGAGGAAAAAGCAACACAAGTAGCACCGGCAGGGACCATTGCTAAATTGAGGAATGCATATTGGAACTCGCGACGCCCAATCTCTTTTTGTGATTTGATGCTCCATTTGCGATGGATTGTTCTTAATGCCTTGCATCTGTTGTGATTGTTCTTCATCATTTTGTTTAACGTATCGGACCTTCACCCCTTGTCGGAAGAAATTTTATATTTCCATGTTTCTGATTCTCTAGAACAGTTGTAATAAAGGTGAAA | |||||||||
gi|73885036|gb|DT487774.1|DT487774 WS02534.B21_J24 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02534_J24 3', mRNA sequence TTCACGTCCACTGTTCATGA EST sequence (targeted fragment marked with yellow): TGCAAACTTCCGCAATGCAATGGCACATCCCGGCAACAAGGAATTAGCACATAGGCAGCAATTCTTTTTCTGGAAGAACTACAGAAACAATCGGTTGAAGCATATTTTACCCAGACCCCTCCCTGAACCCGCCGCTGCACCCCCTGCTCCAGCTCCTCCACCTCCACTTCCTGTTCAACCTGTGCCACCTGTGCCTGCGGCAACTCTTGGTATGCTGGCTGCTTCTGGTGCAGTCCCTTCTCCCATGCCATATGGCATGCCTACTGGTTCTGCTTTTGGAAAAAGTGATATCAGGAGCAGTGGAAGTGAGCGAAGAAAGAGGAAGAAAGAAGTTTAATTTGAAGTTTGAACTGCTATCTATGTTAAAAGTAGTGGGACCAATATATCTGCTAAGGTAGCTATACAAAATCATCCACTGGGTCTATAATACTGAAAAGTGTCAAAGATTCGATGGGATTTTCTATTCATTTTGCTTCTTTTTGGTTATTGGCCAAGTATTTCATGAATTATTGGTGCTACCGTACTGGTAAACGAAAGATGATAGAGTAATCAACATCATTGTCCGAGGATTTGCTGAAATACTAGTACATTGTATGAAGTTGACGAAGCCTATGTGGACTAATCAGCTCCAGAATTCTTAGATGGGTCGGAATGAAAAGCAAAATAGCGTCTTTTTTGTTTCTTTTTTTCTCCCGGTAGTGAGCATTGTACTGATGTATTCTTTGGATAGAATCTGTATTATATGATTTAACTCGCCAGGAAGCAAAATCTTAAGAGTGTAGTGCCAAACAATGAATTCTGTTTGTAAGCATGTTAGAGACTTTCGTTATTTGAATATCGATTTGCGTCTTTACACGTGTCTCTTGCTATATATATATATATATAACTGTTCTCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|52383161|gb|CV230055.1|CV230055 WS01915.B21_E16 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01915_E16 3', mRNA sequence TTCACGTCCACTGTTCATGA EST sequence (targeted fragment marked with yellow): GAGTTTTTTTTTTTTTNTTTAGAGTGCAAAAACTTATCTTATAAAGAATAGTGGAAGTGAATTCATACATGCTTACTTTCCTCAATAAATAATGATCAAGAGATTTACTGTATCAAGATAAGAACCAACATGGGCGTAATTCCACAAAATAGCTTATCATTGGCATGGTTTGTTGCCAGTTTGCAGACACAGCAATGGAAAATGTTATGACACCAAAACTTTCAATCATATGACTGGAGGTGGAAAACTTGGCAGGCCGGCTTATATGACTTCTTCAATGCCGCCTGCTCAAACTTCTTTAAGGCAGATTCATTCTCTTGTAAACCAGTCTGAACAAAGTACCTTATCCACCATGTTGAGGTCCGGAATTTGGCCGGACGACCAAACTTAGACAACTCTGCAACTTTAACTCTTTGCTGACCTGGAGCGCCAGAAAATACAACTAGGCCATCAGCAGACACCCTTGCCAGTTCTGGAAGTGTTTTGTTGAGATATTTTGGAGACAAGTAATCCAACGCATCTGACACTATAACAAGAGAGAATGATTTTGGCCGGTAGGGCAGAGGAAATTTGATATCAG | |||||||||