| mature miRNA: TTCCACAGCTTTCTTGAACT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73886951|gb|DT489689.1|DT489689 WS02542.B21_O16 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02542_O16 3', mRNA sequence TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): TAAGCATAGAAAAACAAAATCAGCACAAGCTATTGTTCATGTTCATCGTCACTCTCATCTTTCACTGACAAATTCAGTTCAGTTCTTTTTTTATCCTACAAGTCCAGATGGGTAGTTTGGGTCACCAATTGCACATTTTCTTGTTACCGTTCTTCGGTCATGGCCACATGATACCATCCGTGGACATGGTCAAGCTTTTTGCTTCTCGAGGCATAAAGACAACTATCATCACCACTCCTATAAACTGGAGTCGGTGTTGGAGTTAAGGAATGGTTTAGAGTGCATGGAGATCATGTTAAAAGTGAAGCTGTAGAGAAGACAATCACTCAAATTATGGTGGGTGAAGAGGCAGAGGAAATGAGGAGCAGAGCAAAGAAGTTAGGAGAAACGTCCAGGAAAGCTGTCGAAGAAGGTGGATCTTCTTACTTTGATTTCAATCCTTTGATTGAAGAGATGAGGTGGCGTCGCCCCTGAAACAAGGCAGTCAAGAGGAATGGTATTATAGCCGGCGCTTCACACCGGGTGAATAATTTTTTTTTTTATGAAATGTAAGGAATAAATAAATAGTATAGAGAGTGTTTATGGCAGTTGACCTCTCGATTCATAAGCGCAATTGTGGGTCCTAGAGATATGAGTACCTAGAGGTATTTTGGGTTTTGCCCCCAGCAAGATACAAATACCGAATTGGTCCTGCACCTTGCAAGAACTTATTAATAATATTAATTATAATAAAAATAATAATATTTATACCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73886048|gb|DT488786.1|DT488786 WS02537.B21_G19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02537_G19 3', mRNA sequence TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): AGAGAGAGGATTCAGATAAAAAAGATCGATAACGCCACCGCTAGGCAAGTCACGTTTTCAAAACGAAGAAGAGGGCTTTTCAAGAAAGCTGAGGAGCTTTCAGTTCTCTGTGATGCTGATGTTGCTCTCATCATCTTCTCCTCCACTGGCAAGCTCTTTGAGTTCTCCAGCTCAAGCATGAAGGAAATACTGGAAAGGCATAATTTGCACTCGAAGAATCTTGAGAAGCTGGAGCAACCATCTCTTGAGTTGCAGCTGGTAGAAGACAGCACCTGCTCCAGGTTGAGTAAGGAAGTTGCGGAGAAAAGCCATCAGCTGAGGCAAATGAGAGGGGAAGATCTGCGAGGATTGGATATAGACGAATTGCTGCAGCTAGAGAAGTCTCTTGAGGCTGGATTGAGCTGTGTGATAGAGAAGAAGGGTGAGAAGATTATGAACGAGATCACTGATCTTCAAAGAAAGGGAATGCAATTGATGGAAGAGAATGAGAGACTCAAACAGCAAGTGGTGGAGATATCTAATGGCCGAAAGCATGTTACAGCTGATTCAGAGAATGTTGGTTACGAGGAAGGGCAGTCATCAGAGTCCGTAACCAATGTCTGCAACTCAAATGGCCCTCTACATGATTATGAAAGCTCTGATACATCCCTCAAGTTGGGGTTGCCATTTTCAAACTGAATGGGAGATCGCAGGGAGATTTCTTCACCAGCAAATGCGGACACAAATAATTGCTTGTATATATAAATAGAACAGGAACATAACTCAGGCACATAGTACTTGTGTACCTTGGACAAGTGCGGGGAAACATTTCTGTTTCCTTTACCGGATGCTACTCATGGAGTTTCTCTTATTGTGTGCACAAGGGTTTGCAGCCCATTTTGTGCAAAAAAAAAAAAAAAAAA | |||||||||
gi|60711169|gb|DN500979.1|DN500979 UM44TA04.5pR Populus female catkins cDNA library Populus trichocarpa cDNA clone UM44TA04 5', TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): AGGGCAGGGAGCAATTGAAGTACCTTGTTTTGGAAGCCTTCGAGGTGGTTGCCAGGGACACAGAGCTGAGCTCTATGCTGCCCGTGTTGCAAAATGCCTGACTGCTTTAGAAGGACGTGAAAAAGTGACAGTGGATGACCTTAAGAAAGCTGTAGAACTGGTTATTCCTCCTCGTTCAATAATTAATGAGAAACCACCTGAGCAGCAAGACCAACAGCCTCCACCTCCACCACCTCCTCAAAATCAAGATTCTGGGGATGAGCAGAATGAGGAGGAAGATCAAAAGGATGACGATAAAGAGAATGAACAACAGCAGGAACAAATACCTGAAGAATTCATCTTTGATGCGGAAGGAGGGTTCGTTGATGAGAAACTTCTCTTCTTTGCACAACAAGCACAGAGACGCCGAGGGAAGGCTGGGAGAGCAAAGAATGTGATATTTTCGGAGGACAGAGGACGGTATATTAAACCCATGCTCCCAAAGGGTCCTGTAAAGAGATTAGCGGTGGATGCAACCCTCAGGGCAGCTGCTCCATATCAAAAATTGCGTAAAGAGAAGGACACTCAAAAGAGTATGAAGGTTTATGTTGAGAAAACTGACATGAGGGCAAAGAGAATGGCAAGAAAAGCCGGAGCACTGGTAATATTTGTGGTTGATGCTAGTGGGAGCATGGCATTGAATCGAATGC | |||||||||
gi|52496573|gb|CV243598.1|CV243598 WS0252.B21_F11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0252_F11 3', mRNA sequence TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): TAATGACACCTGGAACCCCTTCTCTCTCGTTATCAAAACCGGAACCGGCCCTTTCGGTTCTCCGGTCTCAAGCTCCATGATTATGAGTGCTGAATTCAATTTGTTGGGTAAAGGTAGTAATAATAATAATTTGAACCCTAGCTTCATGCTTCACTTCAAGCCTCAATTTGGGGACTTTTCTATTAAGAAGTCGCAGTCGTCCAGTCATGTCAGTCACGTTACGAGGTCGATTCAGAACGGTGGCGTTTCGTCTGATGATGATGGATCGGTTGAGGTCGTCGAGCCTGCGTCTCCGAATACGACTCCGGCTGTGGCTAATGGCATGTTTTATGGGAAGAGGATTGCTGTTTTGCCTCCTGTGACGGCGAGTGCGGTTGCGGGGGTTTTTTCTGGTCTCGAAGTGGCAGCAAGGACGAAGTTGCCCGTGAGGAGCAGGGCTGTGGTGAATTTCCGGTGGGGAGTTCGGGTCCCGGCTGAGATCAAGAGTGGTAGTGGTGAATCAACGGCTGGGATTAATTTCAGGAAGATACCGTTTCTGGTGATGAACAAGGTTGGGATTGAACACGTGGATGACGGAGATGGGAGGAGTAAGAAAGAGGGGACCACTGGGAAGGTGGGGATGGAGTTTGGGAATTCTGACGTGGCAGAGGCGTGTTTGGGTGTGAAAAGGCAATTAGAGATACTTCAAAGCAAGAATGGGCATCTGAAGAAAGCTGTGGAGGGATTGAGGGAGGAAATTGGTGGAGGGAAATTGTTAATTGGGGAATTGAATTCTGGGAAACTTGAGAGAAATGGAATTAAAAGTGGGAGTAATGGTTACAAAAAAAAAAAAAAAAAA | |||||||||
gi|73874261|gb|DT476999.1|DT476999 WS01231.B21_J13 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01231_J13 3', mRNA sequence TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): TCTGTACAGGACGGTCTTGCCATTGCGGTAGCAATATCAATTTTCAAGATCCTTCTTCAAGTTACAAGGCCAAAGACTCTGATTTTGGGAAACATACCTGGGACGGATATATTCCGTAATCTTCATCACTACAAGGATGCTACGAGGATCCCTGGTTTCCTCATTTTAAGCATTGAAGCTCCAATCAACTTTGCTAATACAACCTACCTCAAAGAAAGGATTGTGAGATGGATAAATGAATATGAAACCGAAGAAGACATAAAGAAACAGTCAAGCATTCGTTTTCTGATCCTAGACCTGTCAGCTGTCAGCGCCATCGACACAAGCGGAGTCTCACTCTTTAAGGATTTAAAGAAAGCAGTGGAGAATAAGGGAGTCGAGCTTGTGTTGGTGAATCCCGTGGGGGAAGTGTTGGAAAAATTGTTAAGGGCCGATGATGCCCGTGATATCATGGGGCCTGACACCCTTTATTTGACAGTTGGAGAAGCTGTGGCTGCACTCTCATCAACAATGAAGGGTCAATCATCGAGCAATGTGTGATAATGAGAGAATTGTAACTATTAATCTCTTATTCGACAAAGAAAAACATCAATTGTATCAGTAGTGCAAAGATAAGCATTTTATGTTGAGCAGCTTTAATGTGATTGCATATGCTTGATATAGTATTTATTAGGCATTTTATATGCTAATGTGTCTTACACTGTAGTGATGCTTCAAAAGTTCAAGCATCCATAGCCTGCAGGCATTATCTGGAAATCAAGTTTGAAAAAAAAAAAAAAAA | |||||||||
gi|73896519|gb|DT499257.1|DT499257 WS0117.BR_M09 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0117_M09 5', mRNA sequence TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): GGCATGTACATATGACATTGTATTTTTGTTGCGGTTCAATAAAGCTGTGGGAAGATACAAACAGGATCAAAGAAAGTTAATGTTTCTTCATCGGGCCCTGCATCAATGATCAGTGTATAAGGTCTCTGATCTTTTTCTTTTTGCTTGATATACGATCTCTTGGATCTAGTTGATTTTAGGGTTTTTGTGAAAACAAATTGTGTGATGTTAATTGATGCTTGCAAATATTCATGATGACTTCGACAATCTCTTGTTTCTTGCAAGTTTCATGCTTTGAAGGAGAACAAGAAGGGGTGGATGAATTATCTTTCAGTCTTGCTACTCAAAGGGTTTTCCATTCTTGAATGAAAATGGCATTTCTGATCCACCTATATGGAAGGAACAAGATTTCTTTAATATTTATTCGTGTTTAAAGGGTATTTTTTGTTGATTATTCTGATTTTCTTATGTTAAAACAGATCTTACAGTGTTAATGATTATGTTTTGCACTACAGATATTCACAGAGTATCTTGGACGCATAGCTTCCTTCCAACAGTGTCCTTCCATTTGTACTTGCATCAAAAGGAGACCACACAAAGATAGATTTATTTGGCATACATATACTCTTCACGAATCATTCTTTTTTACTTC | |||||||||
gi|3857925|gb|AI166640.1|AI166640 xylem.est.452 Poplar xylem Lambda ZAPII library Populus trichocarpa cDNA 5', mRNA sequence TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): GTTTCTCTCACTATATTTTCACTTCAACAAAAGAAAAATAAAGGGATATGAGATCTGAGAAGATTTGAAGGTTTTGTGTTTAATCTCGCAAGTCCTGGTCATGCTTTTCCACAGCTTTCTTGAACTTCTTTGCCTTGCTTAATCTGTGTATATATAGATCACTACATGTACAGCTCCTATATATATAAATATATGTATGTATAGCGCCATGGAAGCTCAAGAAAGCTGTGG | |||||||||