| mature miRNA: TTCTCACCTCTCTCTTCTTTC species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|60711184|gb|DN500994.1|DN500994 UM45TC10.5pR Populus female catkins cDNA library Populus trichocarpa cDNA clone UM45TC10 5', TTCTCACCTCTCTCTTCTTTC EST sequence (targeted fragment marked with yellow): TACGGCCGGGAAGGATTACAAATAAAAATGCTTTTTTTACTTGAAACGAAGACAAATAATATCTAGGGGCACTTGATGGTGCTCAAATCAAAGAACACCATCAATTATAAAATAGTGTGTCAGTTCGTTGGATTTAACATTATAATAACCCTAATTCTGTTAATAAGAAAGAAGAGAGAGGTGAGAAGCATCCCTGTAACCTCTTCTGAAACTTTCAAGGATATTACTTTGAGAGGGTTAGGCAGGGATTTCATTTCTTTATCTTTCCCTTCTCTCTTCTTCTGCTGTGGAAAAAGGAAGACGAAACCTTGGCATTGGATTGGGGATACATTTCTCTTTAGACAGTTTGAAAGAGAAGGGTTACTTAGAATCTGATAGAAGAAATGGATAACATCTCCGAAGAATTTGCCCTAGTTGCCAAGAAAGGAGCTCCAGTGCCACCTCCATCACGCGGTCCACCAACAACCAGTTACCGCAGAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|73888448|gb|DT491186.1|DT491186 WS02547.C21_A17 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02547_A17 3', mRNA sequence TTCTCACCTCTCTCTTCTTTC EST sequence (targeted fragment marked with yellow): AAGACCAACGTCCTTCTTTGTTTCAATCTTTGTTATTCGAAGCTTGTGGTAGAACAGTGAATCCAGTAAACGGCGCTGTAGGCCTTTTGTGGACTGGAAATTGGCACGTCTGCCAAGCTGCAGTGGAAACAGTCCTGCGAGGAGGTACTTTACGGCCGATGCCTGACTTACTTACCGGCGGAGGATCTCCATCTTCATCTCCACCATCAGATGAGGCATCGGAGTTTGAAGTAGCCTGTACGGACATATGGAAGCTGCAGGATCCAAATCCAAATCCAATTCATCATTCTAGATTCTCGAATTCGAGATCTAGAGTCTCATCAAAAAGGAAAGGGACGGAGGAGCCGATGGTAGTAAATATGCGGCATGACGATCTTGATCTTCTGTTAACCCCAAGTACTTCTCAAAAAGGGTTTGCCGAAATCTGTCGACCGGGTACTCCTTCCATGAATTCGGAGGAGTCGGTGACTACGAATGCAACTTGCTTCGATAGTGCTGGATTTGGAGATCAGTATGGAAATGGAGGAGGAGAAACAAAGTTATTGAACTTATTTCTTTAGATTTGTAGCAAGAGAGAGGGGAGAAAGGTGGCGAAGCTCTATGTTCTGTTTAATTTTGTGAATCTGAAGTTCAAATTAATGACGGGAGAGGGTAATTTGGTGTTATACAAGACTTCTTCTTCCTTGTACTGGGTTAGTTTTTTTTTTTTTTATATTTACACTGAATTGGATTCCGGAGAGATTTTGTAGAAAAAAATGAAAATGGTAATGAAGTACTGTTATCTTAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|18004363|gb|BI120388.1|BI120388 F014P29Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence TTCTCACCTCTCTCTTCTTTC EST sequence (targeted fragment marked with yellow): CCTATCCCTTCTTTGGAACCTCACAAACAAAGATCAAAGAAAGCACAGAGAGGAGAGAGTAGANNTATTTTTCAGGGCACTGTCNGGCTTGGAGATTCTGATACCACGCATCAATTTTGTTAGTTCTTTAATGGGCCTTTCTTTTTCAATACTCTTATCTGCATGGNCTGCAATTCTGGGACACAAGTTTTTTGGCTCAAAGGGATACTGTTGAAAATACTGTTGTAAGGNCCTAAGCTTTGGAAGGAGAGATGGAGAAATGGGCCAAGAACAAACAGCTTC | |||||||||
gi|73894865|gb|DT497603.1|DT497603 WS01126.BR_P08 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01126_P08 5', mRNA sequence TTCTCACCTCTCTCTTCTTTC EST sequence (targeted fragment marked with yellow): TACAGCACAAATCAAGGAGAGAGGAGAGAGGAGAGAGGAGAGAGAGAGGCCATCATCAAGGCAGGCAGGCAGGCAGCGTAGCCAGCAACACAAATCCAAGGACGAGCAAGCAGCGTCTACTGTTTGGGAAAATACAAAAAAAAAAAAAAAA | |||||||||
gi|73889779|gb|DT492517.1|DT492517 WS02550.C21_P10 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02550_P10 3', mRNA sequence TTCTCACCTCTCTCTTCTTTC EST sequence (targeted fragment marked with yellow): GCTGGTGGGCAATGTGACAGTGAGGCTGAACCCATAAAAAACGTCACATACCTAAGGCAGTATCCACCGAAGATGCTGGTTCTTGAGAAAGTGTTGAGAAACATGAAAACACATGTCACATACCTAAATGTTACACAAATGACTGATTATCGGAAGGATGGGCACCCTTCAGTCTATAGGAAGCAAAACCTGTCTCCGGAGGAAAGGAAATCACCGTTACATTTCCAAGACTGCAGCCATTGGTGTCTTCCCGGTGTGCCGGATGCGTGGAATGAGATTCTCTATGCTAATCTTCTAGTCAATGAAAAACAGAAGCAGCAAGCGCAGAAGAGGCATAGGTAAAGTAAGAAGAGGCCAACACAAAGTTAGAGAGACTGCAGTTAAAATGTGGAGTTGAAAAAAAACGTACATGCAGTATAGTTTTTCTTTTCTTTCAATTTTGGGTTATAGAAACAAAGAAACAACATGGGGAAAGATCCAAGAAACATGAGACATGTTTTCTCCAAAAACTATGAGAGAAACAAGGCAAGAGAGGAGTGAATGTGCTTATAGTAATATAAATCTATTTGTTTATTTAAATGTGAGAGAAGAAAGAGGAGAGAAGAGATTGAAGGTGAAGTTTATAGGCGGGAATCTCTCCCCACTTGTTTCTTTAATTATTATTCTTCTGGCCTCAAATTAAGGCTCTGTTGATAGGAAATTTAAATTTATTTCCCTTGAATAATACCTTGTTAAGAACTAAAAAAAAAAAAAAAAAA | |||||||||
gi|73892027|gb|DT494765.1|DT494765 WS01119.BR_G04 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01119_G04 5', mRNA sequence TTCTCACCTCTCTCTTCTTTC EST sequence (targeted fragment marked with yellow): GAAGCAAGGGAGAGGAGAGAGCTAGCTAGCTAGTCAAGTTAAGAGGCAGAAAACAAGAATGTCTTCCAGGAAGAAAAAGAAGGCAGCTCTTTACGAGAAGTTACGTGCTGCTACCAATTCTAATGCTATGAACAAAACCTCAATCATAGTAGACGCGTCAAAATATATTGGAGAGTTGAAGAACAAGGTGGATAGGCTAAAAAAAGAAATCGGAACATCTTCAACCCCCCAAAATTCATTACCTGCGCAGGTCACAGTGGAAAACCTAGAAAAGGGTTTCCTTATTAATGTATTTTCAGGAAAGAATTGCCCTGGATTACTTGTCTCCATACTTGAAGCCTTCGAGGAACTAGGCCTTGATGTGCTTGATGCTAGGGTTTCTTGTGAAGACAATTTCCAACTTGAAGCGATTGGTGGAGACCAAAACCAAGGCCATGATGCTCAAGTAGTGAAACAGGCAGTGCTGCAAGCTATCCATAACTGGAATGAAGGCAGCTAGCTAGTGAGCAAGAATGACCCAAATATTTTCTTCCCCTATCTTCCTGTACGCTACTGAGAAATTGGGAATTTGTATATTGAATTTCAAGCACACTAGGCAGTCCTAATTCCAAGTTAGTAGTCAGTCAAAATGTGCAGCAATGGGATTCTGGTAATTAATTTTCAGTTTTTAAAAAAAAAAAAAAAA | |||||||||
gi|52499796|gb|CV246821.1|CV246821 WS01116.B21_B03 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01116_B03 3', mRNA sequence TTCTCACCTCTCTCTTCTTTC EST sequence (targeted fragment marked with yellow): AAGGCTCAACCGCTAACCGCCGTAGCTAAAAACGATTAACTTCCCTCCCCGATAATTTCATTTCAAAGAGAGAGAGAGAGGAGAGAATGGCAGGGAGAGGAGAGATAGTGGAAGCAGAGAACGCAGAGGCAGAGGCTATAATCACAAGAATAGAACACAAAACTCGCAAGATCGAAAGCCTACTCAAACAGGGCAGACCCGTTGAGGCTCTCAAAACGGCTCTGGAAGGCTCGCCTCCAAAGACTCGAGATGAGAGATGCAAGTCAGCGAATTGGATAGTGGTGCACAGAGCTCTAATGGCAATAAAAGATGTGGATTCATTGTTCTCTGCTTTAGATCCTGAGTACTATGATATTCTCATGAAGTACTTGTACAGGGGATTGTCAACTGGAGATCGGCCCACATGCGACCAATGCCTGCGGATACATGAAAAGTTAACAGAAAAGGCTGGATTGGGTTGCATATTGCGTTCCCTTGCAGACACTGTGAATACCGTTTGACTGTGTCATATATACCAAAATGCAAATCTATCCATCTATGTAATATTTAATTATGAATGATGATAATGTGCAGGGGCTGTCAGGGTTTTATGTTCCAAAAGCTTCGCCTTGCCTTAAAGCTTGCGATACAGTACCGGTTTTCTTATTTCATATTTTATTGAGCCAAAAAAAAAAAAAAAA | |||||||||
gi|52503228|gb|CV250253.1|CV250253 WS01126.B21_P08 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01126_P08 3', mRNA sequence TTCTCACCTCTCTCTTCTTTC EST sequence (targeted fragment marked with yellow): ACTAGTTTAATTAAATTAATCCCCCCCCCCCGACAGCACAAATCAAGGAGAGAGGAGAGAGGAGAGAGGAGAGAGAGAGGCCATCATCAAGGCAGGCAGGCAGGCAGCGTAGCCAGCAACACAAATCCAAGGACGAGCAAGCAGCGTCTACTGTTGGGAAAATCAAAAAAAAAAAAAAAA | |||||||||
gi|73891425|gb|DT494163.1|DT494163 WS01117.BR_J18 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01117_J18 5', mRNA sequence TTCTCACCTCTCTCTTCTTTC EST sequence (targeted fragment marked with yellow): TCCGACAGCACAAATCAAGGAGAGAGGAGAGAGGAGAGAGGAGAGAGAGAGGCCATCATCAAGGCAGGCAGGCAGGCAGCGTAGCCAGCAACACAAATCCAAGGACGAGCAAGCAGCGTCTACTGTTTGGGAAAATACAAAAAAAAAAAAAAAA | |||||||||
gi|38598421|gb|CK114096.1|CK114096 V037F04 Populus male catkins cDNA library Populus trichocarpa cDNA clone V037F04 5', mRNA seq TTCTCACCTCTCTCTTCTTTC EST sequence (targeted fragment marked with yellow): GGCAGATGAGCAAAAAAGGGGGAGTCAGGAGGAGGGATGAGTAGAGTACTTGAGACAAGAGAGATAGAGGGGATGGAAGAAAAGAAGGTACTTCAGAAGATCAAGAAGGTAATTGAGAAGGAAGGACAGAGAAGAAGGCAGCTGCAGCTGAAGGTATCAAGAACTTAGAGGAGGGGAAGGAGGAAAAAGTAAGGAGATGAAGAGAAGAGAGAGGAGAGAAGGACCGAAAGGGAGAGAAATTTAGAAGAGAAAAGCGGAAACAAAAGTGAGGAAGGACGCAAAGAAGAGGGATAAAGAAGCAAATAGTAGTAAAAGTGTGGAGAGAGGGAAAAAGAGGACAGGA | |||||||||
gi|73890911|gb|DT493649.1|DT493649 WS01116.BR_A09 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01116_A09 5', mRNA sequence TTCTCACCTCTCTCTTCTTTC EST sequence (targeted fragment marked with yellow): GAAGCAAGGGAGAGGAGAGAGCTAGCTAGCTAGTCAAGTTAAGAGGCAGAAAACAAGAATGTCTTCCAGGAAGAAAAAGAAGGCAGCTCTTTACGAGAAGTTACGTGCTGCTACCAATTCTAATGCTATGAACAAAACCTCAATCATAGTTGACGCGTCAAAATATATTGGAGAGTTGAAGAACAAGGTGGATAGGCTAAAAAAAGAAATCGGAACATCTTCAACCCCCCAAAATTCATTACCTGCGCAGGTCACAGTGGAAAACCTAGAAAAGGGTTTCCTTATTAATGTATTTTCAGGAAAGAATTGCCCTGGATTACTTGTCTCCATACTTGAAGCCTTCGAGGAACTAGGCCTTGATGTGCTTGATGCTAGGGTTTCTTGTGAAGACAATTTCCAACTTGAAGCGATTGGTGGAGACCAAAACCAAGGCCATGATGCTCAAGTAGTGAAACAGGCAGTGCTGCAAGCTATCCATAACTGGAATGAAGGCAGCTAGCTAGTGAGCAAGAATGACCCAAATATTTTCTTCCCCTATCTTCCTGTACGCTACTGAGAAATTGGGAATTTGTATATTGAATTTCAAGCACACTAGGCAGTCCTAATTCCAAGTTAGTAGTCAGTCAAAATGTGCAGCAATGGGATTCTGGTAATTAATTTTCAGTTTTTAATTAAGCAAAAAAAAAAAAAAAA | |||||||||
gi|52403148|gb|CV239958.1|CV239958 WS0233.B21_P15 PT-MB-A-13 Populus trichocarpa cDNA clone WS0233_P15 3', mRNA sequence TTCTCACCTCTCTCTTCTTTC EST sequence (targeted fragment marked with yellow): AAGGAAACTCGTGAAAGAAGAAGGACGAAAGAGGTGAAAAGGAGGGTTAACAAGAAAGTGCCCGATACAACACAAGAGAAGCCTATTGAATCACCAAAAGATGCAAAGTTTAGCAAGGGAATGCTAGTTGAGGTTAGCAGTGACGAAGATGGTTTTAAAGGTGCTTGGTTTGCTGCAACTATTGTTGAGCCAGTGGGCAAGGACAAGTACCTTATTGAGTACCAAACCTTGAGAACCGAAGATGATAGTGATTTTCTGAGGGAAGAGATTGACACTGTGCACATTAGGCCTCATCCTCCACAAACTATAATTATTGATCGATTCAAGAAGTTGGAAGAAGTTGATGCTCTGTACAATGATGCCTGGTGGGTGGGTGTAGTTTCTAAGGTTAATACTTTCCCAAAGTATTCAGTCTTCTTCAAGGATTCCAATGAGGAATTAGAATTTCAGCACTCTGACTTAAGGCCACATCAAGACTGGATCAATGGCAAATGGGTCACTCCATCAAAGGCTTTGAAGCTGTGATCGCTGGAGAAAGTAGTAGAGCTTTGTGAGAGAACCTGCCATATTGCTGTATATATCGCTGTAATTCGTATCAATCTCCATTTCCTGGCCTATGGTAGGAGTAGTAGAATATCTTGAGGTTTCTTGCTCGACAAGGGTTGTAGATTCTGCGGCTGAATTACTGCACTTATATAATCTGGTTCTATTCCATTTTCGTAAAAAAAAAAAAAAAAAA | |||||||||
gi|73895865|gb|DT498603.1|DT498603 WS0115.BR_N05 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0115_N05 5', mRNA sequence TTCTCACCTCTCTCTTCTTTC EST sequence (targeted fragment marked with yellow): GACATCAAGATAATTAGTATTAGCATCGTCAACACGAAGAAAAGGGGCATAGAGAGAGAGAGAGAGAGGAGAGAAGAAGAGGGTTTGGTGCTTATTTTTAAGGACTGGAGGTTTTGTGAAGGATCGATGACCAGCATAATGGGAGCAGAAACAGCTGACACCTACAGCATGATTAATTATGAAGAGACTGAATTACGCCTAGGGTTACCTGGAGGTGCTAGTAATGGAAATGATGGTGAGGCTGCAAAGGGTAATGGGAAGAGAGGGTTTTCAGAGACGGTTGACTTGAAGCTTAACCTTTCAACTAAAGAAACTGGAAAGGATGGATCAGATCAGGAGAAAGTAGTAATGAAGGAGAAAACTGTTGCTCCTCGCCCCAATGATCCTGCAAAGCCACCGTCCAAGGCACAAGTTGTGGGTTGGCCACCCATTAGATCATTCCGTAAAAATGTCATGGCCGTCCAGAAGAACAGCAACGATGAGGGTGAAAAGGCCAGTAGCAGTGGCACTACTGGTACTGCAGCTTTCGTTAAGGTTAGCATGGATGGTGCCCCATACTTGCGAAAAGTGGACTTGAAATTATACAAGAGCTACCGAGAACTCTCTGATGCTCTAGGCAAAATGTTCAGCTCCTTCACCATCGGTAACTGTGGCTCACAAGGAACGAAAGATTTCATGAATGAAAGCAAATTGATAGATCTTT | |||||||||
gi|52395664|gb|CV236258.1|CV236258 WS01223.B21_H11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01223_H11 3', mRNA sequence TTCTCACCTCTCTCTTCTTTC EST sequence (targeted fragment marked with yellow): AGACAGGGAGCTGCAGGCTTTGCATCCTGATGACCCCCATATTGTAGTATTAAAACACAATGTATGGCGTGTAAAAGGTCTTATACAAGTTTCCAGATCTATTGGTGATGTATATTTGAAGAAGGCCGAGTTCAACAGGGAACCTTTATATGCTAAGTTCCGACTCCGAGAACCTTTCAAAAAGCCAATATTGAGCTCAGAACCGTCAATTTCAGTGCACCAGCTGCAGCCTCACGATCAATTTGTTATATTTGCCTCTGATGGCCTTTGGGAGCACCTAAGCAATCAAGAAGCAGTTGATATAGTTCAAAATCATCCACGCAATGGAAGTGCAAGGAGGCTGGTAAAAGCTGCCTTGCAAGAAGCAGCAAAGAAGAGAGAGATGAGATATTCAGACTTGAAGAAGATCGACCGTGGTGTGCGTCGACATTTCCACGATGACATTACTGTGATTGTTGTGTTTCTTGACTCAAATTTCGTAAGCAGGGTTAGCTCAGTCAAGTGCTCGAATATATCTGTTAGAGGGGCTGGAGTCAGTCTGCCTCCCAACACACTGGCTCCTTGTACCACACCAACGGAAGCTGGCAGTATGTGATGAAGCTGTATCTCATGTTCCTGTCTCTTGTATTATTCTCATGTGAATACCAGGTAGCTTCTGAAAGAGATAAAGAGGAGCCACCCTTCAATTCTTTAATGCACACTGTAACTTTTAACTGGAACTCATACTTGAATTTAGCTTATGTGCGAAAAACCCTAGAACTGGAGAAGTACAAGGTGACAATTATTATAGTTATTTCTTGGGAAAAAAAAAAAAAAAA | |||||||||
gi|73892044|gb|DT494782.1|DT494782 WS01119.BR_G22 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01119_G22 5', mRNA sequence TTCTCACCTCTCTCTTCTTTC EST sequence (targeted fragment marked with yellow): GACAGCACAAATCAAGGAGAGAGGAGAGAGGAGAGAGGAGAGAGAGAGGCCATCATCAAGGCAGGCAGGCAGGCAGCGTAGCCAGCAACACAAATCCAAGGACGAGCAAGCAGCGTCTACTGTTTGGGAAAATACAAAAAAAAAAAAAAAA | |||||||||
gi|73883203|gb|DT485941.1|DT485941 WS02529.B21_J12 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02529_J12 3', mRNA sequence TTCTCACCTCTCTCTTCTTTC EST sequence (targeted fragment marked with yellow): GGCAATCAACACTGTAGTTGTAAAGCGTATTCTGCCTCAGTCCATTACTTTCTCTGCTGTTATATGTTCTCTGAGTCGCCTGAGGTAAAGGGGGGAATTTGATTCAAAAGAAAAGGGGAAATTAAGCTCCGCTCCCAGGAGTGGCTTATGCGAGAGACAGGAGAGGTGAGAAAAGCAAACTGGCATTTTCACCAGCCATAATAAGAATGATGGAGCTTTAATAGGACTGGGGATGATGCATGTTTACTTACACCTCGAACTTTACAATTCATGTTCAAATCGAGCTCATAGTTTTATTCATAGTCAAAAAAAAAAAAAAAAAA | |||||||||