| mature miRNA: TTGACAGAAGATAGAGAGCAC species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73890315|gb|DT493053.1|DT493053 WS02553.C21_D23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_D23 3', mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): AGCAGCGTTTCTGTCAGCAGTGTAGCAGGTTTCATGTAGTTTCAGAATTTGATGACGCAAAGAGGAGTTGCAGGAGGAGATTGGCAGGGCACAATGAAAGAAGAAGAAAGGGCTCTCTAGATTCTGTTTCAAGGAATGCTTCTCATGTTGAAAATCTATGAACATGAAACTATCTGAATATCCAATTTCCTCCTCATCAGACAAGTTGATAGCTGGGAGATTTCCATACATAGCGTCACCGACAGGATGTGCTCTCTCTCTTCTGTCATCCAAGGCTGATTCTTGGGTTTCTCCATCTGATCTCTCCTCAAGATCAAGTGCTGCGCTACGCGAATTGATCGCAGAACACCGCGCAGCCATCCCAGCTAGGCAGCTTATCCTTGAAAACACTCGCACAACCATGCAATGGGTGAGTCCCAACCGAGCTCCAATTTTTTCATAACCCATCAGCAACAAATGTTGTCCGAGCCGCACAATTGGGGCCGGTTCAACGGCACCACCATGCATGTGACTTTGGACCTCATGCAGGCTCCAAGCTCAGCATTCGGCTTCTTGTCCGCAAGAGGGAAGAATAAAGAAGAGGGAGGAGAGTGTTCCCAGTTATGGAGTACATTGGAAGGAGCCCATGCAGTTTAAGATCTGCAACACTTCCATTCTCTTGCATTTAGGCGGGTGGATCATTGAGTTGATCTACTTGTATAATTCTTTGTACCGCAAGTTTCATTCTTCAATTCAAATATCAGAGTGATTGTAATAATCAATGCATTTGGAACAAATTGCCAGCTGAATCTCTGTATTTCTTTCTAGCCTGAGATAAAGTCTTGCACCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73881185|gb|DT483923.1|DT483923 WS02523.B21_P03 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02523_P03 3', mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): AATAACAAAAGATTATATAGCAAAGCCTGCAGAAATAGGTGGTAATGATGGGCAGTTTCACTTGCCTGGCTTTGATCTGACAAATGGCATTGATATTCAGCACCATCATAAGTCTAATAGCTCCTTACCATCTAAAGGTTTGGAAGAATACATCATTCCTTCCAAAGCGGAAGCAGCACCAGAATCTCATCGTGCTCTCTCTCTTCTGTCAAACAATTCATGGGGTTCACGTGAGCCGCAATCTATTTCATTTGAACAACCCGGGCATACAAATCACACCACTCAGTCTGTGCTGCAAGTTATACCCCAAAACTCACCACTTGCTTCATCAGAGTATTGGAGGACTGAGCAACCGTCAACTGACTCTCAAGTGCATACCTTGACGTCTCACTGATGGTAGCAGTTACTTTCAAGAGTTTCAGCTGTTAAGAACATCAAAAGGGAATGACTTCAATTCCATCCAGATGAACTTACTGCTGAAGCGATTTATCATTTTCATCTTAACAAATTAAGTGAAGGCACTGGACCATCCTGTAGCATACTGTTAGGATTCAGATCATGGTGATTCGAAGTTCTCCTAAAACACCATTTGGACTGGTTAATGATGGATCACTGATTTGAAAGTTATCTGTATCTGTTATTAAATTTCTAGGAACCTAGAACTTAATATTGCAACTTTTGAAGCATCTTTTGAAAACCTAGGGATCTGAGCTATCAATTTTCTTGTTCCTTCCATTCGATGCCCATGGTAAAGCTCGTCTTCGCTTCTCTTGTGCTGTAATATACTGAAAATAGTAGTACTTAAATGCAGGTATGAATGATCTTTCAAACGGAAAAAAAAAAAAAAAAAA | |||||||||
gi|73883136|gb|DT485874.1|DT485874 WS02529.B21_G14 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02529_G14 3', mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): CTGCATTAACTTCTAACATTGAGGTAGCACCAGATCTTCGGCGTGCTCTCTCTCTTCTGTCAACCACTTCTTGGGGCTCGAATGAGCATGGATCCACCTCTCTGGATCAACTGATGCTTGCAAACCAAACAAGCATGACACAGCCAATGATAAATGCTGAACTCCAAAATTGTCCAGTTGCTTCATCAGAAAATGCACGGATGGAACAAGCATCCCTTGAGTCTCGGGTGCATTCTTTGGATTTACATGACAATGGAAACGTCCAGTTGCAAGAGTTTCAGCTGCTCAAAGCACCCTATGCTACCGGCTGCTTTTATTCCAATCAATTCAGCTAATTATTGGAAATGATTCAGCTCTTCCTTTTTGAAATAACTGCTCGTTAAGGTTTGCTTTCATCTGGCAATTTTTCAAAATCGAACATTTGGATGGTTTCAAAAGCATCAACTTTCAACCATTTGAAGTCTGCCAGAATTGCCAGAATTGCAGTTCAAACTAATGTTTGCCAGAGTGCAGTTTAAAAGGAAGTCCAGAATAAAGTTGCTGCTGCACCGTATTTTCTTGACTAAAAACACCATCTCATAACACCATTTGGACTGCAATGTGGCTAAAACCTTGCTATTACCTCTCTCTATCTGGACAGTATCATTGGCATGACATTTGTAACTTTGTCAGACTGCAAAATGAATGGTTTGGGGGATTTTTTGTCTTTGCTTGATGATGACAACATTAATTCCCTGTTAGATTTCCATTTCTCCTCAACTAAACTTAGTTATGTTTTAACAAGGCTGCTTTGCTGGTAATAAAATCAGTCTTTAACGGGCAAAAAAAAAAAAAAAAAA | |||||||||
gi|52382694|gb|CV229826.1|CV229826 WS01914.B21_I22 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01914_I22 3', mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): GAGTTCACTCTCTTAAAGAAGAGGAGGAAGGTAGAGAGGAAATGAGTGATCCAAACAAGCCAACCAGCTCAGGCCAAGGCTATGGCGTCTCCTCCTCTTCCAGCTTTGCTTTAACTCCCGCCGCCAAGGGGCAAAACCAAGAACAATCTAGTCAAAGGATTGTTTTCATCATCAAGCTCCTTATCAGGCAAAAAAATGAGGGCTGTGTGGGAAGAAAGGGGTGAAGCGCTGCCTGCCTGCGCGCGTGTGTGGAGGGTGTACTCTTTCTTCTTTCAATAATTGAAGTAGCCTTGGGTGCGCTGCGTGTGTATATGCGTGTATGTTCCTTGTTAGAAAAGGTGTGAATTCATCATGATTAACCATGCTAAATTTCATTTCCTTGAAAGAAGAAGAAGAAAAAGACTACTAGTGATTGAGAAAATATCTTGGATTTCTTCAGTAGGGGAATTGTTCATGGGCATGTATATGTATTATGTAGTAGAAGTGATGAAGAGCGCCTGTAAATTGAAGAGAGAAAAAATCTAAACAGTAATCGAATATCTCTTCAACTTGTGCTCTTTATCAATTTGCAGAAGAAATTGTTGTGATTTGTATATATCTATTTTTATCTTTAATAATAATTTATTGATTTTAATTATCAAGTAAAAAAAAAAAAAAAAAA | |||||||||
gi|24066357|gb|BU874833.1|BU874833 Q072E01 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): GGGAGGAGGAAGGTAGAGAGGAAATGAGTGACCCTAACAAGCCAACCAGTTCAGGCCAAGGCTATGGCGTCTCCTCCTCTTCCAGCTTTGCTAACCTCCCGCCGCCAAGGGGCAAAACCAAGAACAATCTAGTCAAAGGATTGTTTTCATCATCAAGCTCCTTATCAGGCAAAAAATGAAGGCTGTGTAGCGCTGCATGCGTGCGCGCGTGTGGGTGAAGGGTGTACTCTTTCTTCTTTCAATAATTGAAGTAGCCTTGGGTGTGCTGCGTGTGTGTATGCGTGTATGTTCCTTGTTAGAAAAGGTGTGAATTCATCGTGATTCACTTTGACTCTCGATGCCAAATTTCATTTTCTTGAAAAAAAGAAAAGAAAAAAAAAAAGACTACTAGTGATTGAGAGAATATATTGGATTTCTTCAGTAGGGCAGTCAATTTCAGGTAGATGATATTGGTCTCGGGGAAATTGTTCATGGACATGTACTATGTAGTAGAAGTGATGAGGTGCTGTAAATCTCTTCAACCTCTGCTCTTTATCAATTTGCAGAAGAAATTGTTGTGATTTGTATCTATTTTAATCTTTAATAATACTTTA | |||||||||
gi|73886763|gb|DT489501.1|DT489501 WS02542.B21_G11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02542_G11 3', mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): AAAAGAAATGATGTAAGGGAAAAGCAAATTAGGATGGTGATGGGGAGGGAAGTAATGAAGAAGGATAGTGCTGATGACTCTTCAGATGATGAAGGGTATGAGCAAAACCAGATGGGGTTTATGGAAGATGAATTTTTCGAGAGTAACAAGAAAAAGAAAGTGGTAGTTACTGCTGCTGCTGCTGCTGGTGGAGGAAGGAGGGTGTCAAGTGGTGGTGGAGGAGGGATGAGGTGTTGTCAAGTAGAGAAGTGTACAGCTAATCTGACTGATGCAAAGCAATATCATAGGAGGCATAAGGTTTGTGGACATCATGCTAAGGCTCAGGTTGTGCTTGTAGCTGGAATTAGGCAGAGGTTTTGCCAGCAATGTAGCAGATTCCATGAACTATCAGAATTTGATGAAACCAAAAGAAGCTGTCGCAGGCGGTTGGCCGGACACAATGAGAGGCGAAGGAAGAATGTTATTGAATCTCACGTGGAAGGCTCAAGCCGCAAAGTGAATGGAACTCATGGCACCCAGTTGAAGGATATGGTATGTGGACAGGCTGATGAAAGGGGAAGAATTAAGATAACAATCCAAGAAAATGCCACTTACAAACATTTCCAGATAAGCTAAACCGATTGCTCTCTCTCTTCTGTCATCCTAGGGATGTAGTGATGCTGATACTCTTTCCCTTCTTCTTCTTCTTCTTCTTATTATTATTATTATTATTATTATTATTATGTACTTCTCCGGCTAAACAAATGCTAATGTCACATTGTGTGACAACCATGCATGGTGTCAGGTTTGCTAGCTGTGGCACTAGGCATATGCTACCAGTGTGGCTTAGCTACTTAACTTAACCCAACTTATTCTAATAGTTTCAGGGTATTGTTGCAGGCACTGACTTGACTTGTATTGAGTGTTTTGCTTCAATCAATATATTATCAGTTATCACAAAAAAAAAAAAAAAAAA | |||||||||
gi|73887626|gb|DT490364.1|DT490364 WS02544.B21_M03 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02544_M03 3', mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): GTGAATATGGAAACAAGCAGAGCTGAAGGAAAGAGGAGCTTGAAGGAAATAGAAGATGAAGAGGAAGAAGAGGATGATGAAGATATTGCTGGAGGGCTAGGGTTTGTAGATGATGACAAGATCAAGAAGAAAGGAAAGAAAGGATCTAGTGGTGGTGGGTCGTCGTCAATGCTGCAGGTTTCTTGTCAAGCAGATAATTGCACCTCTGATCTGACTGATGCCAAGCGATACCATAGACGCCATAAGGTTTGTGAGTTCCATGCCAAAGCTCCCTTTGCTCCCGTCAATGGACTGCAGCAACGCTTTTGCCAGCAATGTAGCAGGTTCCATGATTTATCAGAGTTTGATGACAGCAAAAGGAGCTGCCGGAGGCGTTTAGCAGGGCACAATGAACGGCGTAGGAAAAGCTCGGCTGAATATCAAGGAGAAGGATCGAACTGACAAGAGTTGTGATCTCTCAGGAGTGCTGGAGGAAGGCTCACTACATAAGAGGGAGACAATTACGTATTATTTCCCCCATAAAGTGCCTCTTCCAAGCATATTTAGATTGGTTAAAATATCTAAATATGTGATCATTGCCATGCTCTCTCTCTTCTGTCAATCCTTAGCTTTCATATTAATTATAATCTATGATCTGTACTTAATTAATACCATTCAATAAATGGATGCCATATATATTATTGGGCAAAAAAAAAAAAAAAAAA | |||||||||
gi|52501638|gb|CV248663.1|CV248663 WS01121.B21_I08 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01121_I08 3', mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): AAGAAGGATGCAAGCCATATCGAGGCGATTAGGGCACCAATCGCTGAAGCCAGCTGCTCACTATCTTCTTTCAAGTCAATTTACCCGCTCTCCGATCACCATTATGGAGCTGATCATCCACGACACGCTTCCTCTCTCGCTGCCAAAGGTGTAGGCCACCTTATTCGCAAGGGAACCGGTGGCAGATCCTCTGTCAGTGGAATTGTTGCTACGGTGTTTGGAGCAACGGGGTTCCTGGGTCGATATGTTGTGCAACAACTTGCAAAAATGGGTTCTCAAGTGTTAGTTCCTTTTAGAGGTTCTGAGGATAGTCATCGCCACCTCAAGTTGATGGGTGATTTGGGTCAGATAGTACCAATGAAATACAACCCAAGAGATGAGAATTCTATCAAGGCTGTAATGGCGAAGGCCAATGTTGTTATTAATCTTATTGGAAGGGATCATGAGACAAGAAACTACAGTTTTGAGGAATTGAACCATGGCATGACCGAGCAACTCGCAATGATTTCTAAAGAACATGGAGGTATCATGAGATTTATTCAAGTTTCTTGCTTAGGAGCATCTGCATCATCCCCATCAAGAATGCTAAGAGCTAAGGCTGCTGGAGAGGAAGCTGTTTTGAGGGAAATGCCTGAGGCAACAGTCATGAAACCTGCTGTGATGATTGGTACAGAGGATCGGATCTTGAACCGGTGGGCCCACTTCGCAAAAAAAAAAAAAAAA | |||||||||
gi|24065931|gb|BU874407.1|BU874407 Q067G03 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): CCGGGGAGAGGAGGAAGGTAGAGAGGAAATGAGCGATCCCAACAAGCCAACCAGTTCAGGCCAAGGCTATGGCGTCTCCTCCTCTTCCAGCTTTGCTAACCTCCCGCCGCCAAGGGGCAAAACCAAGAACAATCTAGTCAAAGGATTGTTTTCATCATCAAGCTCCTTATCAGGCAAAAAAATGAAGGCTGTGTAGCGCTGCATGCGTGCGCGCGTGTGGGTGAAGGGTGTACTCTTTCTTCTTTCAATAATTGAAGTAGCCTTGGGATGTGCTGCGTGTGTGTATGCGTGTATGTTCCTTGTTAGAAAAGGTGTGAATTCATCGTGATTCACTTTGACTCTCGATGCCAAATTTCATTTTCTTGAAAAAAAGAAAAGAAAAAAAAAAGACTACTAGTGATTGAGAGAATATATTGGATTTCTTCAGTAGGGCAGTCAATTTCAGGTAGATGATATTGGTCTCGGGGAAATTGTTCATGGACATGTACTATGTAGTAGAAGTGATGAGGTGCTGTAAATCTCTTCAACCTCTGCTCTTTATCAATTTGCAGAAGAAATTGTTGTGATTTGTATCTATTTTAA | |||||||||
gi|73887215|gb|DT489953.1|DT489953 WS02543.B21_K06 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02543_K06 3', mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): GAGGCAAACCCTACTACAGCGTCGGTGGTGGTGGTGGTGCTCACGACGGACCCTCCTCTTCCACGTCAGTGAATGTGCCGAGGTGTCAGGTGGAGGGGTGCCATGTGGCGTTGTTGAATGCTAAAGATTATCACAGGAGGCATAAAGTTTGTGAGATGCACTCCAAGGCTCCTAAAGTAATTGTTCTAGGTTTGGAGCAGCGGTTCTGTCAGCAGTGTAGCAGGTTTCATGTAGTGTCAGAGTTTGATGATGCAAAGAGGAGTTGTAGGAGGAGATTGGCAGGGCACAATGAAAGAAGAAGAAAGAGCTCTCAGGATCCTGTTTCAAGGAATTCCTCTCAAGAAAAATTGATGGCTGGGAGATTTCCATACATAGCGTCGCCGACAGGATGTGCTCTCTCTCTTCTGTCATCCAAAGCTGATTCCTGGGTTTCTCCTTCTGATCTCTCCTCAAGATCAAGTGCCGCACTACGTGAATTGATTGCAGAACACCGCACAGCCATCCTATCTAGACAGCTTGTTCTTGAAAAACACTTGCACCACCATGCCATGGAAGACCTTGGTGAGTCCCAACCTAGCTCCAATTTTCTTATAACCCATCAGCAACAAGTGCTGTCCGAGCCACACAATTGGGGCCGGTTAAACGACACCAGCACGCATGTGACTTTGGACCTCATGCAGGCTCCAAGTTCAGCATTCGGATTCTTGTCTCCCAGAGGGAAAAATAAAGAAGAAGAAGAAGAGTGTTTTGAGTTATGGAGCACCATGGAAGGAGCCCATGTAGTTTAAAATTAATCTACAACACCTACTTTATTCTTTTGCATTTGGTGTTAATTGTTTGGTCAGTGAGGCTTTTGGATCGTTCAACTTGCTGTATAATTCTTTCTTGTTTGATTTGAAAAAAAAAAAAAAAAAA | |||||||||
gi|73886999|gb|DT489737.1|DT489737 WS02543.B21_A18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02543_A18 3', mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): ATGGGTTACAAAAGACTGTGGAAATTCTTCACCGGCAATTGATGACCGCAATTTTTGTACCACAACAACTTTTCATGAGTTAGCTGGGGCGTCGCACTCTAGCTGTGCTCTCTCTCTTCTGTCAGCTGAATCACAGGACTTGAGCCATTCTGCAGGAAATATAACGGCTAGGCCCTTGGTCAGTCAAGTGAGTCATGCTTGTCAGAGCTTGGGTAATGTTAACAAATCTTTAGGGGTAGGCTCCTTGGAAAAGTACTTCCCAAATGGGCTCTATCCGTCTGGAATGAATTTCATTGAAGTCAACGATATGGGGCCATTTGTGGTTCCTGGTTCCGGTCACGCAGCGGACTTCCAAGTTGAAACAGATGGATTTCTACAACAGTCAGATATTTTGAATGCGAAGTATTGCGTTTCTCCTGAAAATGGATCAACTGTGGATTTGCTTCAACTCTCATCACATCTTCAGAGGGTGGAGCAACAGAGGAACTCCATGCAAGTGAAGCATGAAAATGAGGAGTTCTGCAGTTTCGGCTCTACTTATGGGGTGTGAGAGGAACAAGGTTCAAAGGAGAGAATTGATGGCAAGCTGCTTGCCTGCATCAGATATAACTACTAACTTTATCGGTGCAGTAGACAATAGGCCCTTAAGAGACTTCAGCTTGCGTTTGCCGTGCATTCCTTTACTTGAAAGGTAAATAACACGAACAATATGTGGAATTTTTTTAATATTATTGTTGTTATTATTATTGTAAGGTGATGCAAGTTTGATTTTGCTAGAGATGACTTATTTCAACTTTCATTTGGAAATACTGTGCTGGACAAGAATTCAATTACTAAATTATGTACGACTGAGTATATCATTGCACAAAAAAAAAAAAAAAAAA | |||||||||