miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TTGACCGGAAAGTGTTTTCCGTTGACC
species: Populus trichocarpa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|73894236|gb|DT496974.1|DT496974 WS01125.BR_B18 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01125_B18 5', mRNA sequence 

TTGACCGGAAAGTGTTTTCCGTTGACC
||||| |||||||||||||||||||||
AACTGACCTTTCACAAAAGGCAACTGG

EST sequence (targeted fragment marked with yellow):
GGACAACAGCCGCTCTGCTGAAACCCAAAAACCCCTGAGCAGCTTTACAAACAGGGATTCAAGATGGCAATGGCATGGAGGCAGATAATCACAAACACAAAAAGGGCAGTTTCAATCCCAACACAACAAGCAATTTCTACACCTGGGTTCTCTAGATTCTTCTCCAAATCGTCCTCTCGTTACATCGTGAAAGTTGGAATTCCAGAGTTTCTAAATGGAATAGGGAAAGGAGTTGAAGCCCATGTGGCCAAGCTTGAATCTGAAATTGGTGACTTTCACAAACTTCTTGTTACTCGGACTTTAAAGCTCAAGAAACTAGGCATTCCTTGTCAACAGAGGAAGCTGATATTGAAATATGCTCACAAGTATAGGTTGGGGCTGTGGAGGCCTAGAGCTGAACCTGTGAAAGCCAAATAAATCTCGGAATCATCTGTCATTTGGAGGATTACAAGGTGTTTGTCGTTAACATTCTTGCATGCAATTACGGTTGCAAAGAGTTTAGGTTTCATGAAGGCCATGTTTGTTTCCCGGAATTCACTTTTCGGGAAACCACTTTCCAAACTTTCCTGTGTTTATTTGCTATTAGGAAAGTTGGTCAACGGAAAACACTTTCCAGTCAACGGAAACACTTTTCGAATTTGGTTTGGTTTTCAGGAAAGTGTTTTTCCTTTTGGCTGTGTTTGTTTTCCGGAAAGTGATTTCCGGGAAACCACTTTCCAAACTTTCCTGTGTTTGTTTGCCATTAGAAAAGTTGGTCAACGGAAAACACTTTCCAGTCAAAGGAAAATTTGGCTTGGTTTTCAGGAAAGTGTTTTCCTGAAAAATTTGGGCAGAAAACACTTTCCAGAAGTTGTGAAAAATTTAGAAATGTCATTATTTGCTGATTATATCAAATTTGATCCCCAAAAAAAAAAAAAAAA


gi|52493852|gb|CV240877.1|CV240877 WS02510.B21_J17 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02510_J17 3', mRNA sequence 

TTGACCGGAAAGTGTTTTCCGTTGACC
|||||||||||||||||||||||||||
AACTGGCCTTTCACAAAAGGCAACTGG

EST sequence (targeted fragment marked with yellow):
GGAATTCATACACTCACGCACTTCACTCTCAGTTCAAGCATGTGCTTCCCAAGCATGTCATCAGAGATGTACACACAGGGGGCCATTGTGTTGAATTGCAGAAAGAATCTTGAGAAATTGTCCAAATTTCTAGATTGTCAAGACCATATTATCATGTCAAAGAGAGGAAGGCCGTGGGTGGTAACTGAGAATCTGTCTGGGTATGATTCATTTGCAGTGTCAATTCAAAACTTGATGCATAAATATCAGGAGAATTGGCAGCATAAAAGTACTGGCCATGCTTTAAAAGTTGTTTGTCCTGGATCTGAGGAATACACGACTGCAAAGCAGCTGAGAGATCTATTCATGGAGTTCACTGAGCATCAACGGCGATTACACAAGAGGCTAGCGATGGAGGAGAGAAAGATCTTGCAGCCATCCCAAGTAGCATAGGTACTTGAATGCATACTGTATATAGGTCTGTCAACATTGTAAAGGAGAAGCTTACCGAAACTAAATGACACGTGATGGGAAAAAGGAAATTAACCTCCCTTGTTTAGGTGTTTCAAAGAGGGCTTTCGTTTTGTATCAGCAGACGGGCGTGTCAGTTTGTTAATTTTAAGGCTGTGTTTGTTTCCGGAAATTGGTTTTCGGGAAACTACTTTCCAAATTTTTTTGTGTTTGTTTGCTATTAGAAAAGTTGGTCAACGGAAAACACTTTCCGGTCAACGGAAAACACTTTTCAATCAAAGAAAAATTTGGCTTGGTTTTAAAAAAAAAAAAAAAAAA