| mature miRNA: TTTCTGATGGTGCTCTTTCA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73882344|gb|DT485082.1|DT485082 WS02527.B21_D20 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02527_D20 3', mRNA sequence TTTCTGATGGTGCTCTTTCA EST sequence (targeted fragment marked with yellow): TTGCTAAAGCGAGTAAGGGCTGCTTGTCATTACCTGATATCGGTTCCTTCTACTCAAAGGTTCAGAAGCCATCACAGCAGCGCATTTATGGCCCAAAGACTGTGAAAATGATGTTGGGAAGAATGGAGAAGTACCCTCAGAAACCGTGGCCCAAGGACCAAATATGGTCATTTAAGAGTTCTCCAAAAGTTTTTGGCAGCCCAATGCTAGATGCTGTATTGAACAAGTCCCCACTAGACAGAGAAATGGTACATTGGTTGAAGCACAGACCTACAGTATATCAAGCGATGTGGGATCGATGAGGTCTTTCCCCAGATTGGGTAAAGCTGCAGGGGGGGTTATTAATTAGGCAACAACAGCTTGTAAGTGTTCTGGAATGATCTCTGCATTTTAGTTCACAGCTACCCCTTTTAGCATGGGAGTTGGGTCATCATTCCAAAACATCTTTCCCTCAGCTGCTTTCTCCTCATTCTTGTGTACAGTTTTTCCTTCTTTTCAATCTTTCCTCCTTGTGATTTTGTAATTCATTATTTGGTAGCAAAGCATTTATTTTTCCTTCTGCTTCAAGTAAAGAAGAAAAAAGAAGAGAAAGTTTACCATCAAAAAAAAAAAAAAAAAA | |||||||||
gi|24071246|gb|BU879722.1|BU879722 V063F02 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence TTTCTGATGGTGCTCTTTCA EST sequence (targeted fragment marked with yellow): TTCTGACGTTGATGCTGATGCTCTTGAGGAAAACAACAGCATACTCGGAAGAGTACGATCAGAAGTGCTATGATACATGTTTTACAAGCTGTGTTGATCAACGTAATATACCGCGGCAGCGTTCGTCTCACTGCATGGACGCGTGCAGCAACAACTAAGATGCAATTCCCTACTGCGATGTTGGTTGGGCGCTTCAAAATTGCAACAAAATCATGGACGATGAGGTGAAAAGGCATATTTGCTTGAATGAGAGCTCGAACACTGACTGCAACCCCAAACACTTGAAGAAGTCTCCGTAGCATCTGCTCTTTCATATTTGGAGCAATATATCTACAAGTAATGTCATGATAAATAATCACATGATTACGGGATGAACCATCCTTAATTATTGAGTAATTAAACCCA | |||||||||
gi|38586054|gb|CK101729.1|CK101729 F113P67.5pR Populus flower cDNA library Populus trichocarpa cDNA clone F113P67 5', mRNA seque TTTCTGATGGTGCTCTTTCA EST sequence (targeted fragment marked with yellow): TCTCTCTTCAAGTCTTCCTCTCTCTCTCTCTCTTCAAGTCTTCCTTCAAGCAATCTATCAGAAAAACTTCCCATTTTGGTTTTCTGATATTTATTTACATCCTCAAATCCTTCTAGTTCATTATTCTGTTTCCTTTCTTGTGTTCTTTGCTTCTGTTAATTAAATTCTCCTGAACTTTATCTCATTTCTGTTCAACAATGGCTCAAATGAAAGATGCCCACATCGTAGAAATCCCAGCTAGATGAAAGAGCACCAACAGAAACCTGATATGTGCCATGAACACAAATAAACAGACAAATTCAAAACCACCCAT | |||||||||
gi|73882950|gb|DT485688.1|DT485688 WS02528.B21_O11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_O11 3', mRNA sequence TTTCTGATGGTGCTCTTTCA EST sequence (targeted fragment marked with yellow): CAAGCACCAGCAGCTTCATTCAGAGTTCCTACAGCCAATGCCTCACAAATCACCATGAATCCATCTCAAGATGGTTTAGATATTGGACTTAGGCATCTAGGATCAGTTCAACCAACTGGCCTTAGAATGTACAGGTCTCACCGTGAGGGAGTTGTACCTGAGACCACCCTAAGACATCGCAACCTCCCTCAGTTGAGAGTATTGCCAACAGATGGGGTAGCAATATTAGGGTTCCCTGACTATTATGAAGTAGAGAATCATGTTGACCACCACAGAGATATGCGCTTGGATATAGAGGACATGTCTTATGAGGAGCTTCTTGCACTAGGGGAGCGAATTGGCAATGTAAATACTGGATTGTCAGAGGGAACCATCAGAAGCCAATTAAAAACAAGGACTTATTTATCATCTCCTTCAATCAATTTGGAAGAGGCAGCTTGTATGGATCAAGAAGCTGATTCTTGTATTATTTGCCAGGATGATTATAAGAGCAAGGAGAAAATTGCAGCTCTTGATTGTGGACATGAGTATCATGCAGTTTGCTTGAAGAAGTGGCTACGCTTGAAGAACGTCTGCCCCATCTGCAAATCAGAAGCCTTAAACACGGAAAGAATGGATGTTTAAGGTGGCGATCTTGCTTTATATAAAATGAAAGGAAGAATAAAGTAGAGGAAAGGGGTGACAGTTTCTTTCTCATAATTTGTTTATTATAACGAAGTTGATATTTTGGCATATGTATTTTGTATATGCACTTGCAAATATACGACTAACCATCACACTAAGTCATTTATTTGTTGGCTCTGTATGTATTAAACCTGTACATACATTCATTATGCATTTCGTGTGATGTATTATAAACTTTCAGTTAATGTGCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73887828|gb|DT490566.1|DT490566 WS02545.B21_F02 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02545_F02 3', mRNA sequence TTTCTGATGGTGCTCTTTCA EST sequence (targeted fragment marked with yellow): ACGCTGCCAAAATTAACATAAACGACAGAGTTGGATTTCTGGGAATCCAGCCATTGGACACATTGAACTTCTTCTTTCCATAGATTACTTCCAATAGAATTCAGATCATCTTCTTGCATTTGATTGAGAAGCAATTGAAGTGGACCAATCGCATAGACACGAGGAAACATGGAGTAAAGGGCATTCAGAACCTCTTGCTCCAAAGCATCAAAAGTATGGAAAATAACGGCAGAACCTTCAGAAGCCCTCTCAGCACATTCCACGCCGAAGTTAAACATATAATCATTTGGATCTGTTGTTCGAACAAAACTGGGAAGGTCCCTTAACTTTATATCTCTCATTCCTGGGATCCAATCTACCACTTTGTCCAAGTAGCCATTTGTTAAAAAGCTCTCATCTTCTAGTGGTGTCAGACCTTTTTCTTTGAGTGCTCGAAATTGTTTAGTCCCCATGAAGCTGCAAGCAGAGATAGTATAGAACAATGCAATAGGAATTTCGTGCATCGCAGCAGCATCGATCGCGACTGGCATGGCACCATCAGAGACGATATAAGTCACTGGGGGGACATCAGAAGATGCTGTGTCATTCACCTTGTCAAGCAGGTCATTAAATGGACCCAATAAGTTCTTCCTGGAAGCCTCACAAATTGCATAGAAATCGTGGGCGGCATTCTCATCCGGAGCAGGGAAGCCATCTGGAATGGATTCAAACCGAAAATCGGGCAAACCAGTCAGGGAATCAGGACCTCTAGATCTAAGTAAACGTTTGTGGTTAAACTCTGTATTGACAAAGGTTATGTGAAAACCTTTGTGATGTAGTAGTTTCGCTAGTTTAAGCATTGAGTTTATGTGGCTCTGAGCTGGGTGGGGAATGCAAACTGCATGAGGCTTATCAACTAA | |||||||||
gi|18019641|gb|BI138693.1|BI138693 F113P67Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence TTTCTGATGGTGCTCTTTCA EST sequence (targeted fragment marked with yellow): AATCTATCAGAAAAACTTCCCATTTTGGTTTTCTGATATTTATTTACATCCTCAAATCCTTCTAGTTCATTATTCTGTTTCCTTTCTTGTGTTCTTTGCTTCTGTTAAGGAAATTCTCCTGAACTTTATCTCATTTCTGTTCAACAATGGCTCAAATGAAAGATGCCCACATCGTAGAAATCCCAGTAGATGAAGAGCACCAACAGAAACTGATATGTGCCATGAACACAATAAAAGCAATTCAAAACCACCCATTAGCAGAAATTTCTAATAGTCCGGGCCATCTTTTGCTTCTCAAGCTATGGCAAAGAGAAGAGGA | |||||||||
gi|38575512|gb|CK091187.1|CK091187 F057P19.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F057P19 3', mRNA seque TTTCTGATGGTGCTCTTTCA EST sequence (targeted fragment marked with yellow): AGGAAAAAAGGAGAGACTGCATGAGCATGGCAGTAGATTGTGGTACAGATATTGGAAGCATCTCAGGGTCAAAATGATGCTGGTGTTTGTGAAGATGAGAAATTTGGGTTTGAACGTGGCCCACTGTTTACTTTGGATACATTTCAGAAATATGCTGATATTTCAAGGCCCAGTACTTCAGGAAGTATGAGAATACTATTAATAAGGGAGGCGATATGACAACGTTTCAGAAGACTTGTGAACCCACATTGGATAATATTGAGGGCGAATATTGGCGAATTGTAGAGAAAGCAACTGAAGAAATTGAGGTCCTTTATGGGGCTGATCTGGAAACTGGGGTTTTTGACAGTGGGTTTCCAAACACATCTAATGAAGTTAGTTCTGCAACAAATGATCGTTATACAAAATCAGGCTGGCACCTGAATAACTTTCCGAGGCTTCCTGGATCCATTCTTTCCTTTGAAAGTGGGGATATATCCGGTGTTTTGGTGCCATGGCTGTATATAGGGATGTGCTTCTCCTCCTTCTGTTGGCATGTTGAAGATCATCACCTATATTCACTGAATTACATGCATTGGGGCGCACAAAATATGTGGTATGGTGTGCCAGGGAAGGATGCCATTAAATTGGAAGAGACCATGAGAAAGCATTTACCTGATCTTTTTGAAGAACAACCCGACTTTCTTCATAAGCTGGTGCACCCAGCTCTTCCCCCAACATAATAAGATCTGAAGGAGTGCCTGTACTATGCGGTGTGTTCAGTAATTCCGAAGAGTTTGTGCCTAACCTTTCCCGCGGAG | |||||||||
gi|24067026|gb|BU875502.1|BU875502 V008A01 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence TTTCTGATGGTGCTCTTTCA EST sequence (targeted fragment marked with yellow): CGGCCGGGCTTTGTAGAAATTTTAGTTTGATGCAAAAGTATCCTGAACTACGGCATCTGGAATGCTTGCTCTTTGTCGATTTATGATTATTGATCCAGATTTTTGTGATGCAAATCTCCAGCTTCTCTTCACAGTTGTGGAAAGTGCACCATCAGAAACTGTTCGTTCAAACTGCACTATTGCTCTTGGAGATTTGGCAGTTCGGTTTCCTAATCTGTTAGAACCATGGACTGAAAACATGTATGCTCGCTTACGAGATCCTTTGGTTTCTGTTAGGAAAAATGCTGTGCTGGTGCTTTCACATCTCATATTAAATGATATGATGAAGGTTAAAGGTTATATAAATGAGATGGCTATACGATTAGAAGATGAACAGGAGAGGATTTCAAATCTCGCTAAACTTTTCTTTCATGAGCTGTCAAAGAAAGGAAGCAATCCTATATATAACTTACTTCCAGATATACTTGGCAAATTATCCAACCAGGAGCTGAAAAGGGAGACTTTCTGCAACATCATGCAGTTTTTAATTGGGTCCATTAAAAAGGACAAACAAATGGAGTCTCTTGTTGAAAAGCTTTGCAACAGGTTCAGTGGAGTGATAGATACTAGGCAGTGGGAATACATCTCGTATTGCCTCTCCCAGCTGGCATTTACTGAAAAGGGAATGAAAAAACTCATTGATTCA | |||||||||