miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: AAGAAAGCTGTGGGAGAACAT
species: Populus trichocarpa x Populus deltoides
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|73923734|gb|DT507044.1|DT507044 WS02417.BR_D07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02417_D07 

AAGAAAGCTGTGGGAGAACAT
||.|||.||||||| .| |||
TTTTTTTGACACCCGTTGGTA

EST sequence (targeted fragment marked with yellow):
GAAATTTTTAAATGGGTAATCCCTCCAACAATGGCTAATCACCTCGAGTTGAAGAGGCCGTTTTAGCAAAATCTTGGGCATGGTTGCCCACAGTTTTTTTTGTGCATTAACATCTAGCTAGCTAGTCATTAGGATTTTAGAACTAGGACATTGCAGTCATGTTTACATAAATGCTTTTACCAACTTTTAATTAATCTTAAACGTGTTTTAACACACAAAAAAAAAAAAAAACTTTCCTTTGGGTGAGGGAAGAAAATCTTATTAACTCTAGTTTTTTCTTAATTTCTTGTAAATTTAATGGGGCTAAACTTTGGGAGTTTTTGCCCCTTTCAGTAAGCAATAGGAGGGGGTAGTGTTTGTTTATTTTGCATTTAGTTTTTATCTTATTACGTCATGCTAAGAACTCCATAAATGGATGTGGAGCTCACAGCACCTGCATGTAACCCAGGGAGATATTTTGGTTCCCATGGGTTCTTCTCCTCTAACCCACCAACCATGGTTAGGACTTAGGTCATCTTTACCAATCTATGCCCTTCTCTCCAACTCTCTCTCTCTTCCTGCTCATGTCTCTCTCTCTCTCTCTCTCTCCATGGAACTTTTACCTGGAGATGCACCAAAATACTTTTTATATTATGTATGTGCCTATGGTTTGGATTGTAACTAGAAAGCTACTTAGGACAGCATTCATTCTCCAACCATGGTGGTTGAGATTGGACGTTACTTCTATGTCTTATTTCTGGACTACTATGCGTACTTCTTCGCATGCATGAGAAGCATCTTTAATTATTTAAAGTTAACAAAAAAAAAAAAAAAAAA


gi|73928396|gb|DT511706.1|DT511706 WS02417.B21_D07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02417_D0 

AAGAAAGCTGTGGGAGAACAT
||.|||.||||||| .| |||
TTTTTTTGACACCCGTTGGTA

EST sequence (targeted fragment marked with yellow):
AAGAGGCCGTTTTAGCAAAATCTTGGGCATGGTTGCCCACAGTTTTTTTTGTGCATTAACATCTAGCTAGCTAGTCATTAGGATTTTAGAACTAGGACATTGCAGTCATGTTTACATAAATGCTTTTACCAACTTTTAATTAATCTTAAACGTGTTTTAACACACAAAAAAAAAAAAAAACTTTCCTTTGGGTGAGGGAAGAAAATCTTATTAACTCTAGTTTTTTCTTAATTTCTTGTAAATTTAATGGGGCTAAACTTTGGGAGTTTTTGCCCCTTTCAGTAAGCAATAGGAGGGGGTAGTGTTTGTTTATTTTGCATTTAGTTTTTATCTTATTACGTCATGCTAAGAACTCCATAAATGGATGTGGAGCTCACAGCACCTGCATGTAACCCAGGGAGATATTTTGGTTCCCATGGGTTCTTCTCCTCTAACCCACCAACCATGGTTAGGACTTAGGTCATCTTTACCAATCTATGCCCTTCTCTCCAACTCTCTCTCTCTTCCTGCTCATGTCTCTCTCTCTCTCTCTCTCTCCATGGAACTTTTACCTGGAGATGCACCAAAATACTTTTTATATTATGTATGTGCCTATGGTTTGGATTGTAACTAGAAAGCTACTTAGGACAGCATTCATTCTCCAACCATGGTGGTTGAGATTGGACGTTACTTCTATGTCTTAATTCTGGACTACTATGCGTACTTCTTCGCATGCATGAGAAGCATCTTTAATTATTTTAAGTTAACAAAAAAAAAAAAAAAAAA


gi|46840135|gb|CN521766.1|CN521766 GQ0114.B3_G21 GQ011 Populus trichocarpa x Populus deltoides cDNA clone GQ0114_G21 5', mRNA se 

AAGAAAGCTGTGGGAGAACAT
|||||||||||||.|.| |||
TTCTTTCGACACCTTTTCGTA

EST sequence (targeted fragment marked with yellow):
GTTTAATCTCGCAAGTCCTGGTCATGCTTTTCCACAGCTTTCTTGAACTTCTTTGCCTTGCTTAATCTGTGTATATATAGATCACTACATGTACAGCTCCTATATATATAAATATATGTATGTATAGCGCCATGGAAGCTCAAGAAAGCTGTGGGAGAACATGGCAATTCAGGATTTTTTTGGGCTCTTTTCTTGCTGTTACGGTCAAGACCTCTCCTTTCCTTCATGGAATGCATACAAAAACCTTTCATCTTCTTCCTCCCTGTATGGATCGTGGATGAGCTCGTGCTTTGAAAGAAGAAGNACAACTACACCACAAATTAAAGCTAGCTNNNNNNGTGTTTATGGNNNNTCATAATTGNAGTNGGGGAAAAGANNTATANGATAAAAATAATGAAGCTTTG


gi|52507597|gb|CV254622.1|CV254622 WS0241.B21_L15 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS0241_L15 

AAGAAAGCTGTGGGAGAACAT
 |.|||.|||||..|.|||||
ATTTTTTGACACTTTTTTGTA

EST sequence (targeted fragment marked with yellow):
GATTTGAATAAATCATTATCAGAGTTGTCTCTACTTAATAGACAAGCATTGATAGTGGTTCCTCGTCAGCGAGCCACAAGTTACCACCAAAGAGGTTCTTTGTCAGACAGAGCAACTACTACAACTAGCAGTGGTTCAGTAAATGCAAATGACGGGGGATATTTTGCATATGTCAAAAGGATTCTATCCTACGTTAATCCTCTCTCCTACTTTGGTGGTAGTGCAAACCCATCAAGTTCTGGACAAGCTCAATCTGCCATAGGAGAATATGGCCCAGATTCAACATCTCAGAATAACACTCCAAGAATGGACAGACCCTACTCCAGTTACTCCCCAAATCAAAACTCTTCATCAACTGGCAGAAATGACAGCAAGGGCAAGCAACCAACAACTTCACGCGTTGGGAGTAACATTCACACACTGAAACATGATGAAGATGATGGCCGATTCAGTGAAAGAAATTCCTTCTGGAATGGAAATTCAACTCAATATGGTGGTGATAATGATGCTAAATAGGAAGGTGATGCTCCTTGATCTTGTGAGAAGCTTCAGTTCTTTATGTTTTTTCACAGTTTTTTACTTTGGGGCAGTCATCTTTTCTGAAATAGGTGTGAGTACATTTTACCAGATAAAAGCATGATAATTTGGTATATATTCCTATTTGCTAACAATAAAACCTTCAAGGAATAAGAAGTTAACGAAGTTCCAAAAAAAAAAAAAAAAAA


gi|52509243|gb|CV256268.1|CV256268 WS0243.B21_G07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS0243_G07 

AAGAAAGCTGTGGGAGAACAT
||.|||.||||||| .| |||
TTTTTTTGACACCCGTTGGTA

EST sequence (targeted fragment marked with yellow):
CCAATTTGGAGAAGGGAGTACTGGAGGAGCCACCAGCTACAGCACACTTTCTGGGCAGAGCTATGGTGTCCAGTACCCACACCACCTGTTTCAGTATTCATCCATTAATTCAACTACTGGAGGATATCCACAACATTATGGTGCACCTATGTCTCTTGCTCCAACTGCAGCCTTGCCATCAGTGTGTTTTGCTGTACCACAGGCGTGACCATGGCTCTACAAGCTCCACCAATTCCTCATCGCTAGAGGGTGTCCGAATCTAGCCACTACTATTCTATGTGTTTCCTCAGCTGCTTCATTTGAGGCCTCGACAACCTTCGGCCTAACCATGGTTCTCTTTCTTTCTCTTCCTAACACAACCTAGCCCATGCTTGGCTGTTGGGCTCTTGCACACGCAAAACCCCCCATAGGGGTTAAAATCATCTCCAAGAATTGGAGAGGCATGCATCTCCTTTCATTGCATCTTTTTGAAAGAAGGGTTCCTTGAAGAGAACCAATACTTAGGTAATCACCAACTCAAGCTATTGGATTAGCTTGGTTGGAAAAAGTTTTCAATCACTAGGCCCAGAAAGGCCAAGTAAAACAACCATTTTGCAAATTTTAGCCTAGGCAAGGCTAATCAACTTACAATGGTTTGCAAAAATGTAAATTGATCAAGAAAAATAGCAAACCCTTTATTTTCAAAGCAAATTTTTAAATGGGTAATCCCTCCAACAATGGCTAATCACCTCGAGTTGAAGAGGCCGTTTTAGCAAAATCATGGGCATGGTTGCCCACAGTTTTTTTTGTGCATTAACATCTAGCTAGCTAGTCATTAGGATTTTAGAACTAGGACATTGCAGTCATGTTTACATAAATGCTTTTACCAACTTTTAATTAATCTTAAACGTGTTTTAACACACGCAAAAAAAAAAAAAAAAAA