miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: CAGCATCATCAAGATTCTCAC
species: Populus trichocarpa x Populus deltoides
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|52528377|gb|CV275402.1|CV275402 WS0176.B21_F19 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides cDNA clone WS0176_F19 3', 

CAGCATCATCAAGATTCTCAC
||||||||||||.| .||||
GTCGTAGTAGTTTTTGGAGTC

EST sequence (targeted fragment marked with yellow):
GGGTCACTATCCAAGCAATGGATAAGATGGTTTTGACAAAATCTGTTGTTTATGAAGCTTTCAGGATTGAACCTCCGGTTCCATTCCAGTACGCTAAGGCCAAGGAAGATATTGTGGTCGAAAGTCATCACGCGGCCTATAAGATCAAGAAAGGTGAAATGATCTTTGGATATCAGCCGTTCGCCACGAAGGATCCTGAGGTTTTTGATGATGCTGAGGAGTTTGTGGGGCATAGGTTTGTGGGGGAGGGAGAGAAGCTATTGAAGTATGTTTACTGGTCAAATGGGCGTGAGACTGTGGATCCAACGGTGGAGGATAAGCAATGTCCAGGGAAGGATATGGTAGTGCTTCTGTCTAGGCTACTGTTGGTGGAGTTCTTCCTACGTTACGACACGTTTACCGTGGAGACGGCAGTTTTGCCGATTGGATCATCCGTGACTTTAACCTCGCTGGGTAAAGCCACCAGCATTTGACGATGGTCACCCAGCTGCCTCTTGTCAAGTTCTATTTTGCGGCCTGCTTTGATAGCTGCCCTTCCTTTTTGGTGGCTAATACCCACTACATTGGCTTTTTGGGCGAATCATTGAAGTATTTCAAATAAACTATTCCTCCACTCGCTTGAAAGCCTCATCGTTATATATAATAATCATTTTTATATATGTCACATGCAGTTTCATACAAGTTGGAGTGTATCATTTTCTAATAGCTCTTCCTTTTGTGCACAAATCTGACGTTGGTTTGTAGTGTATTGTCGTCGTTCAAAGTTTGTATACCCTTTCTTCATGCTATTTGAATTTCCATTTTCTCGTGTAAAAAAAAAAAAAAAAAA


gi|73929242|gb|DT512552.1|DT512552 WS02419.B21_J11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02419_J1 

CAGCATCATCAAGATTCTCAC
||||||||.|| | |||| ||
GTCGTAGTGGTGCAAAGAATG

EST sequence (targeted fragment marked with yellow):
CATGCACTTGACCTTATACGCGGAAAAATTTTTCTGATGCTGATGGACTCTTGTTTGGAGGGTCATTTTTCAAACGATGATGGAACTGAACTTGTGCGTTTAGCTTCACGTTGCTTACAGTTTGAAGCTCGTGAGAGGCCCAATGCAAAATCTCTTGTCACTGCTCTCACTCCTCTTCTAAAAGATACTCAGGTTCCATCCTATATTTTGATGGGTATTCCACATGGAACTGAATCCCCAAAGCAAACAATGTCATTGACACCTCTAGGGGAAGCTTGCTCAAGACTGGATCTTACTGCAATACATGAAATGCTGGAAAAGGTGGGATACAATGATGATGAGGGAATTGCAAATGAGCTTTCCTTCCAAATGTGGACAGATCAGATACAGGAAACGCTGAATTGTAAGAAACGTGGTGATGCTGCTTTTCGAGCTAAAGATTTTAACGCTGCCATTGATTGTTATACTCAATTTATCGATGGCGGGACCATGGTATCTCCAACTGTATTTGCTAGACGCTGTTTGTGCTACTTGATAAGTGACTTGCCACAACAAGCTCTTGGAGATGCTATGCAAGCTCAAGCAGTTTCTCCCGAGTGGCCCACTGCCTTCTATCTTCAAGCTGCTTCCCTCTTTAGCCTCGGGATGGACACTGATGCACAGGAAACTCTAAAAGATGGCTCATCTTTAGAAGCTAAAAATCATGGAAACTGAAAATGTATAGCCTTTCGTATTTATTTTTTTCCTTTTAAACTTGCGCACTCCATGTATTCATCTCTATTTGTTTCCTTTTGCGCTTGAATTACTGCAGCACCACACGGGTTAACTGTATTATTTAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAA


gi|73931797|gb|DT515107.1|DT515107 WS02426.B21_K17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02426_K1 

CAGCATCATCAAGATTCTCAC
||||| |||||||||| | ||
GTCGTCGTAGTTCTAAAACTG

EST sequence (targeted fragment marked with yellow):
GTAGATTTCAAGTTTTCTTGCTTTCTAGCTCTCTTAGGACTGAGGTTCTGCTGGTTTTGCATCAGTAGTTTAGATATTTAGCTATTTTCGCTCCCTTTTCTTGCTCCCCTCTTGTGGGTTTGTCTCGTTTTTGAGTTTTGATTTCTAAAGTCAAGATCTCGAAGATCCCAAGATTTTCTTTTCTTGTTTTTTAAGGCTGCTACTCTGCCAAAATCCTGTCAAAATCTTGATGCTGCTGGTTTGGATCTTAATGTTTGAGATTCATGTCTCCAGTTGTCAGTGAAATCATCCGGTCCGGGTTTATGATCAATTCCTCTTTCAGACGCAGGACCCATCTTGTTCAATCTTTCTCGGTTGTGTTCCTTTACTGGTTCTATGTTTTTTCAGAAATAATCTTTCAACTCTGCCTGGTTTGTAATATATAATAAGTAGTAGAATATAATTGTTATCTTTAACAATTTGAAATCTGTAAGGTTAGAACAATATTAAAGATCTCATTTTTATTGAGATTTGTCAAAAAAAAAAAAAAAAAA


gi|52531832|gb|CV278857.1|CV278857 WS0147.B21_K09 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides cDNA clone WS0147_K09 3', 

CAGCATCATCAAGATTCTCAC
|||||||||||||||||||||
GTCGTAGTAGTTCTAAGAGTG

EST sequence (targeted fragment marked with yellow):
TCAACCAAGCTTGCACTCTTCCTCTCATTCTAGTTTTTTTTTTTAAATAATATTCTTATAAAGGTTTGATGAGCTGATGTAGCTAAAAGAAGTGAAAAAACCAAATGGGTTCTCTTTCTTTTTATGTGATCTTCGCCGGAATCTGACATGAGGTGGTACTTGCTATATGTTAGTCTCACCACACACAACCAGAGGGAGTGTGTTTTTGTCAGAATCTCGCCGGATAAATAAATCTGATCCACTTAACTAAAAATCTTTGATTTACCAAAGTACTGAAACTCGTTAGTTCTTGATTCCATTTATTAGATTTTTTTTTCTTTCTTTCTTCTCATCTGATATAAAAAAATATTATTATATTTTTAATGTTGAAAACGGGTTTTGTCTTGTTATAAAGTTCTGAGTTAAACAAGGTTGTAGGATTCTTTCTCGGGCATCCCCTTCACGTATTCCCTTTTGGCCTTAACCAATGGCAACATGCCACATCAGCTCCTTGCTCGTGGGTTTGTTGGTTTGCATATAGAGGAGGTAAAAAGATGGGGCATGGAATTGAAGGCTAAAGGGGTTCTTGTGCATGGAAATATTGACAATCGTTGTTTGCGGGTGGAGCATCATCAAGATTCACATGCAAATGCACGGCCGGTGATGTTAAGAGTTAAATCTTTCTTTGTTTCTGTTCATCTGCCAAAGTTCTTTGGAAGTGAGAATCTTGATGATGCTGCATCGGCAATAAACGACTATACAACACAAAAGGACTTGCAAAAAAAAA


gi|52526856|gb|CV273881.1|CV273881 WS01712.B21_H21 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides cDNA clone WS01712_H21 3' 

CAGCATCATCAAGATTCTCAC
|||||.||.||||||.| |||
GTCGTGGTGGTTCTAGGTGTG

EST sequence (targeted fragment marked with yellow):
TTATATTGAAGCCTCCTCTGTGATATATTAATTAACAGCCAGCCTTAACGAAAGATGGCTCCATACAGGTCTCTGGCTTTGATTGCATTGGTCGTGATCATGTCAGCTATAGAATATGAGAGTCGGGTTGCAAGAAAAGACTTGGGTGTGGATCTTGGTGGTGCTGGGAGTTGGGCTTGGAGAAGGAGTGGGCGTGGGTTTAGGAGGTAGTGGCTCAGGGTCTGGAGCTGGGTATGGTTCGGGTTCTGGTTCGGGATCACGTTCCGGGTCAAGTTTGTCCTCTTCATCCTCATCCAGGTCCAGTTCAAGCTCTAATGGCGGGTATGACGCGGGCTTTGAAGCGGGTTCCTATGGTGGGTCTCGAGCAGGATCAGGATCAGGTGGTAGGCAAGGTGGTGGAGCAGGTTCCGGGTCCGGTTCTGGACATGGGGAGGGATACGGTGAGGGTTCTGGCAGGGGAAGTGGGTCCGGCAACGGTGAAGGCTATGGCGAGGGTGGTGGACAAGGATCGGGGTATGGCAGTGGAAGCGGTAACTAAATGAGAAAGATAATTAATACCAGCGTGGTGAAAATAAGAATAGAACAACTCACTGTTTGGTATATAAATAAATAAACAGATGGTGGAATAAGAGCACTCCTTCGTCCATGGAGTCTTTAACCTAGTTGTATACCAGTCATGTAACTCATGAGTCCTTCTTGTTGCCTAATATTATCGTTGTGTTCATGTGCATGGCTTATCAAATAATTTTCCATCCAAGTATTTCTTCGAAAAAAAAAAAAAAAAA