miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: CCGATGCAGCATCATCAAGAT
species: Populus trichocarpa x Populus deltoides
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|52528275|gb|CV275300.1|CV275300 WS0176.B21_A02 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides cDNA clone WS0176_A02 3', 

CCGATGCAGCATCATCAAGAT
||||||||.|||||.|| | .
GGCTACGTTGTAGTGGTACAG

EST sequence (targeted fragment marked with yellow):
CAGGAGCTTTGGCATTTTACATACTCTCTGCTCTTTTTTTTAATAGCTTTGTCATCATTTTTGTGGTGACTGTGCTTCTTGCTGCTCTTGATTTTTGGGTGGTCAAGAATGTGAGTGGTCGGATNTTAGTTGGCCTTAGGTGGTGGAATGAGATAAATGATCTGGGTGAGAGTGTGTGGAAATTTGAATCCCTTGACCAAGAGTCATTAGCCCGAATGAACAAGAAAGACTCATGGCTGTTCTGGTGGACTCTTTACATAACAGCGGTCGCCTGGATTGTGCTTGGAATTTTCTCTCTCATAAGGTTCCAAGCAGATTACTGCCTCATTGTTGGAGTATGTTTGACCCTCAGCATTGCGAACATTGTTGGCTTCACCAAATGTCGCAAAGATGCTAAGAAGCAGTTCCAGCAGTTTGCATCGCAGACCATTGCATCTCGAGTGTCATCTACCATACAGTCAGCATTCAGTGTTGTGTGATTCATTCATTACAGAAGGTGGCGCATATAACCGAAGTCGTGCACTTGTGCAAGAGATGTTGAAAATTGGTGGGGGAAGCATACAGACATGGTGATGTTGCATCGGTTGATTTTTTGAACTTCCAGTAGGATACAGTTTAGATGTTTTGTTGACCTCTCAGACACCTAATCATTTGTGCAATGAATTAAGAAAAACGATAGTGTTACAGAAATAATTTTGCTGTTGAGTGTAATTATTGCCATGTTTTTAGCTCTCTTCAGTAAAGCAGTCTTAACAGCCTTCAACAAAAAAAAAAAAAAAAAA


gi|73933169|gb|DT516479.1|DT516479 WS02431.B21_I11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02431_I1 

CCGATGCAGCATCATCAAGAT
| ||||||||||||  |||||
GACTACGTCGTAGTCATTCTA

EST sequence (targeted fragment marked with yellow):
CCTACTGTTGGACTAAATATTGGTCGTATTGAAGTGGCAAATTCAAAACTGGTGTTTTGGGATCTAGGAGGTCAGCCTGGTCTTCGCTCAATTTGGGAGAAATATTACGAAGAGGCACATGCTGTGATTTATGTAATTGATGCTGCTTGCCCATCACGTTTTGAAGATGCAAAATCTGCGTTGGAAAAGGTTCTTAGGCACGATGATCTGCAGGGAGCCCCCCTTTTGATATTAGCAAACAAGCAGGATCTTACTGATGCTGCATCAGCAGAAGAGCTTGCTCGATATCTAGACCTTAAGAAGTTGGATGAAAGGGTTTACATTTTCGAAGCTGTTTCAGCATATGATGGGATGGGGATCAAAGAAAGTGTAGAATGGCTCGTGGAGGTAATGGAACGAAGCAAGAGAACTGAGATGTTAAGAGCTCGTGCTGGTGTAACTGGCCCTGGTGCTTAGAGACTGTCCAATGCAGTTGTTTCTCCTGCTTTTTGTAGCAGCTGTAAATAAACAGAGATTGGATTTGATTTTACATGACAGAGTCCATCCATTTTTCAATCTCCCCTGCAGCAGCACACCTTCTTATCTACTATGCCCAGTGCCTGTTTTTTGACTGCTAAATGTTCAGAAGATACTTTAATTCTATCCTTACACTGCAATGGAGCAAGTCAGGGGAGGGAGGACACTCCATATCTGCTAAGAATGACCAAAGGTTGTTGGTGCATTATGTTACTGCATTTGCCTTTTGAAATGCTTTTACTACCAAAATTTAAAATAGCCGAGGTGCATTAATGTCCTCATATAAAGGTATTAGAGGAGTTCAAGATATCAATTGTTCCATTTTACCAAAGAAGTCTAATTATTGTTCATAAATTGAAACCCACAAGATGTTCTTAACAGATTCAAGTTCACGAAAAAAAAAAAAAAAAAA


gi|73903121|gb|DT505859.1|DT505859 WS01812.C21_A19 PTxD-IL-N-A-9 Populus trichocarpa x Populus deltoides cDNA clone WS01812_A19 

CCGATGCAGCATCATCAAGAT
 ||| ||||||.|| ||||||
TGCTTCGTCGTGGTCGTTCTA

EST sequence (targeted fragment marked with yellow):
ATAAGGAGCGGTTTGGAGAGCTAAAAAATATGCACAGCTGCTTTACATTTGCTGGTGATGAGGATTTTCTCAAAAATGACATTCGTGGGAAGTCAGATCTTGATGCTCTCGGTGCTCTCGGTGATGCGGGCTGGTATGGTATCAGGTCAATTCTCTGGGCCGTTGACTATGAACTGCCGAAAACTGTAACAGCGTTGCCTGGGCCTGTTTTAAATGAAGCAGGGGTTATTTTGTCTTGTGGTGCTGCTCTGCATTGGGAAGATGGGAAAGTGGCAACTTTCCATTGCTCTTTTCTGGCTCATTTGACAATGGATATTACTGCTATTGGAACAGCGGGGACTTTGCATCTCAATGATTTCATAATTCCTTTTGGAGAGAAGGAAGCGTCGTTCACAACAGTTTCAAAATCTGGGTTCACAGATCTGGTGACAGGTTGGGTGCCTGTGCCAAGCCAGCACACTGTTACCACAGATCTCCCCCAGGAAGCTTGCATGGTGACAGAATTTGCCCGCTTGGTTGGAAATATTAAAGCAAATGGCGCAAAACCCGATCCAAAGTGGCCGAGTATAAGCAGGAAGACACAGCTTATACTGGATGCTGTCACGACGTCAATTGCCCAAGGTTCAAAGCCTGTTGAGATTTAATCAAGACATATCTTGCTGGTGCTGCTTCGTTTCATTGGACTGGACTCTATCTATTGTCAAATAACACAATTGCCATTTTGTCCATTTCTTTGCAAATGAGATTTGTGGCATGGGAATGTCTGTAACAGTATTTGATGATTGCTTGATGTGTCTTTTTTAAAAAATGCGGCTTCAAGCTTTGATTGTGATTTCAAATGAAATCCACATGATAGATTTTCATCCAAAAAAAAAAAAAAAAAA


gi|52531832|gb|CV278857.1|CV278857 WS0147.B21_K09 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides cDNA clone WS0147_K09 3', 

CCGATGCAGCATCATCAAGAT
|||||||||||||||||||||
GGCTACGTCGTAGTAGTTCTA

EST sequence (targeted fragment marked with yellow):
TCAACCAAGCTTGCACTCTTCCTCTCATTCTAGTTTTTTTTTTTAAATAATATTCTTATAAAGGTTTGATGAGCTGATGTAGCTAAAAGAAGTGAAAAAACCAAATGGGTTCTCTTTCTTTTTATGTGATCTTCGCCGGAATCTGACATGAGGTGGTACTTGCTATATGTTAGTCTCACCACACACAACCAGAGGGAGTGTGTTTTTGTCAGAATCTCGCCGGATAAATAAATCTGATCCACTTAACTAAAAATCTTTGATTTACCAAAGTACTGAAACTCGTTAGTTCTTGATTCCATTTATTAGATTTTTTTTTCTTTCTTTCTTCTCATCTGATATAAAAAAATATTATTATATTTTTAATGTTGAAAACGGGTTTTGTCTTGTTATAAAGTTCTGAGTTAAACAAGGTTGTAGGATTCTTTCTCGGGCATCCCCTTCACGTATTCCCTTTTGGCCTTAACCAATGGCAACATGCCACATCAGCTCCTTGCTCGTGGGTTTGTTGGTTTGCATATAGAGGAGGTAAAAAGATGGGGCATGGAATTGAAGGCTAAAGGGGTTCTTGTGCATGGAAATATTGACAATCGTTGTTTGCGGGTGGAGCATCATCAAGATTCACATGCAAATGCACGGCCGGTGATGTTAAGAGTTAAATCTTTCTTTGTTTCTGTTCATCTGCCAAAGTTCTTTGGAAGTGAGAATCTTGATGATGCTGCATCGGCAATAAACGACTATACAACACAAAAGGACTTGCAAAAAAAAA


gi|73901464|gb|DT504202.1|DT504202 WS01312.B21_G18 PTxD-IL-FL-A-4 Populus trichocarpa x Populus deltoides cDNA clone WS01312_G18 

CCGATGCAGCATCATCAAGAT
| ||||||||||||  |||||
GACTACGTCGTAGTCATTCTA

EST sequence (targeted fragment marked with yellow):
TGTTTTGGGATCTAGGAGGTCAGCCTGGTCTTCGCTCAATTTGGGAGAAATATTACGAAGAGGCACATGCTGTGATTTATGTAATTGATGCTGCTTGCCCATCACGTTTTGAAGATGCAAAATCTGCGTTGGAAAAGGTTCTTAGGCACGATGATCTGCAGGGAGCCCCTCTTTTGATATTAGCAAACAAGCAGGATCTTACTGATGCTGCATCAGCAGAAGAGCTTGCTCGATATCTAGACCTTAAGAAGTTGGATGAAAGGGTTTACATTTTCGAAGCTGTTTCAGCATATGATGGGATGGGGATCAAAGAAAGTGTAGAATGGCTCGTGGAGGTAATGGAACGAAGCAAGAGAACTGAGATGTTAAGAGCTCGTGCTGGTGTAACTGGCCCTGGTGCTTAGAGACTGTCCAATGCAGTTGTTTCTCCTGCTTTTTGTAGCAGCTGTAAATAAACAGAGATTGGATTTGATTTTACATGACAGAGTCCATCCATTTTTCAATCTCCCCTGCAGCAGCACACCTTCTTATCTACTATGCCCAGTGCCTGTTTTTTGACTGCTAAATGTTCAGAAGATACTTTAATTCTATCCTTACACTGCAATGGAGCAAGTCAGAGGAGGGAGGACACTCCATATCTGCTAAGAATGACCAAGGTTGTTGGTGCATTGTGTTACTGCATTTGCCTTTTGAAATGCTTTTACTACCAAATTTAAAAGAGCCGAGGTGCATTAATGTCCTCATATAAAGGTATTAGAGGAGTTCAAGATATCAATTGTTCCATTTTACCAAAGAATTCTAATTATTGTTCATACATTGAAACCCACAAGATGTTCTTAACAGATTCAAGTTCATGGAATGTGTGCCTTGTTGGCTTGTTCTATCCAAAAAAAAAAAAAAAA